Compare commits
2 Commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
ac998b9cc7 | ||
|
|
3ba9704741 |
13
.vscode/tasks.json
vendored
13
.vscode/tasks.json
vendored
|
|
@ -5,7 +5,6 @@
|
|||
"label": "start-all-tasks",
|
||||
"dependsOn": [
|
||||
"build:pkg",
|
||||
"phoenix-web",
|
||||
"cert-web",
|
||||
"aorta-web",
|
||||
"dmp-web",
|
||||
|
|
@ -37,18 +36,6 @@
|
|||
"dev:logger"
|
||||
]
|
||||
},
|
||||
{
|
||||
"label": "phoneix-web",
|
||||
"type": "shell",
|
||||
"command": "pnpm",
|
||||
"args": [
|
||||
"dev:phoenix"
|
||||
],
|
||||
"dependsOn": [
|
||||
"build:pkg"
|
||||
],
|
||||
"problemMatcher": []
|
||||
},
|
||||
{
|
||||
"label": "aorta-web",
|
||||
"type": "shell",
|
||||
|
|
|
|||
|
|
@ -23,22 +23,11 @@
|
|||
"js-cookie": "3.0.5",
|
||||
"three": "0.156.1",
|
||||
"path-to-regexp": "6.2.1",
|
||||
"@cornerstonejs/core": "1.16.5",
|
||||
"dicom-parser": "1.8.21",
|
||||
"cornerstone-wado-image-loader": "4.13.2",
|
||||
"@msgpack/msgpack": "3.0.0-beta2",
|
||||
"pako": "2.1.0",
|
||||
"@kitware/vtk.js": "29.2.0",
|
||||
"@cornerstonejs/dicom-image-loader": "1.41.0",
|
||||
"@cornerstonejs/core": "1.41.0",
|
||||
"dcmjs": "0.30.0",
|
||||
"dicomweb-client": "0.10.3",
|
||||
"@cornerstonejs/tools": "1.41.0",
|
||||
"@cornerstonejs/streaming-image-volume-loader": "1.41.0",
|
||||
"@cornerstonejs/calculate-suv": "1.1.0",
|
||||
"vtk.js": "29.2.0",
|
||||
"@itk-wasm/dicom": "5.0.2",
|
||||
"itk-image-io": "^1.0.0-b.18",
|
||||
"itk-mesh-io": "^1.0.0-b.18",
|
||||
"web-workers": "0.9.1"
|
||||
"pako": "2.1.0"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@babel/core": "^7.21.8",
|
||||
|
|
|
|||
|
|
@ -1,143 +0,0 @@
|
|||
[
|
||||
"5.0.37",
|
||||
[
|
||||
"apple a14",
|
||||
"14",
|
||||
"a14 apple",
|
||||
0,
|
||||
[
|
||||
[
|
||||
2704,
|
||||
1756,
|
||||
120
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple m1",
|
||||
"1",
|
||||
"apple m1",
|
||||
0,
|
||||
[
|
||||
[
|
||||
2880,
|
||||
1800,
|
||||
198
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple m1 max",
|
||||
"1",
|
||||
"apple m1 max",
|
||||
0,
|
||||
[
|
||||
[
|
||||
3456,
|
||||
2234,
|
||||
556
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple m1 pro",
|
||||
"1",
|
||||
"apple m1 pro",
|
||||
0,
|
||||
[
|
||||
[
|
||||
3024,
|
||||
1964,
|
||||
342
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple m1 ultra",
|
||||
"1",
|
||||
"apple m1 ultra",
|
||||
0,
|
||||
[
|
||||
[
|
||||
5120,
|
||||
2880,
|
||||
437
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple m2",
|
||||
"2",
|
||||
"apple m2",
|
||||
0,
|
||||
[
|
||||
[
|
||||
2880,
|
||||
1800,
|
||||
60
|
||||
],
|
||||
[
|
||||
2940,
|
||||
1912,
|
||||
209
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple m2 max",
|
||||
"2",
|
||||
"apple m2 max",
|
||||
0,
|
||||
[
|
||||
[
|
||||
3456,
|
||||
2234,
|
||||
120
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple m2 pro",
|
||||
"2",
|
||||
"apple m2 pro",
|
||||
0,
|
||||
[
|
||||
[
|
||||
3024,
|
||||
1964,
|
||||
120
|
||||
],
|
||||
[
|
||||
5120,
|
||||
2880,
|
||||
60
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple m2 ultra",
|
||||
"2",
|
||||
"apple m2 ultra",
|
||||
0,
|
||||
[
|
||||
[
|
||||
5120,
|
||||
2880,
|
||||
60
|
||||
]
|
||||
]
|
||||
],
|
||||
[
|
||||
"apple paravirtual device",
|
||||
"",
|
||||
"apple device paravirtual",
|
||||
0,
|
||||
[
|
||||
[
|
||||
1024,
|
||||
768,
|
||||
30
|
||||
]
|
||||
]
|
||||
]
|
||||
]
|
||||
|
|
@ -12,11 +12,6 @@ export const proxyMap: TProxyMap = {
|
|||
changeOrigin: true,
|
||||
pathRewrite: { "^/dicom-web": "" },
|
||||
},
|
||||
'/wado':{
|
||||
target: "http://localhost:8042/wado",
|
||||
changeOrigin: true,
|
||||
pathRewrite: { "^/wado": "" },
|
||||
},
|
||||
"/cert": {
|
||||
target: "http://localhost:12144/",
|
||||
changeOrigin: true,
|
||||
|
|
@ -31,5 +26,5 @@ export const proxyMap: TProxyMap = {
|
|||
target: "http://localhost:5000/",
|
||||
changeOrigin: true,
|
||||
pathRewrite: { "^/py": "" },
|
||||
}
|
||||
},
|
||||
};
|
||||
|
|
|
|||
|
|
@ -7,7 +7,6 @@ import jsonLoader from "./loaders/json.loader";
|
|||
import imgLoader from "./loaders/img.loader";
|
||||
import babelLoader from "./loaders/babel.loader";
|
||||
import { cssLoader, lessLoader } from "./loaders/style.loader";
|
||||
import CopyWebpackPlugin from "copy-webpack-plugin";
|
||||
|
||||
// 加载配置文件
|
||||
const envConfig = dotenv.config({
|
||||
|
|
@ -41,6 +40,11 @@ const baseConfig: Configuration = {
|
|||
"@": path.join(__dirname, "../src"),
|
||||
"@@": path.join(__dirname, "../core"),
|
||||
},
|
||||
// fallback: {
|
||||
// crypto: require.resolve('crypto-browserify'),
|
||||
// buffer: require.resolve("buffer/"),
|
||||
// http: require.resolve("stream-http"),
|
||||
// },
|
||||
},
|
||||
// plugins
|
||||
plugins: [
|
||||
|
|
@ -64,22 +68,6 @@ const baseConfig: Configuration = {
|
|||
"process.env.BASE_ENV": JSON.stringify(process.env.BASE_ENV),
|
||||
"process.env.NODE_ENV": JSON.stringify(process.env.NODE_ENV),
|
||||
}),
|
||||
new CopyWebpackPlugin({
|
||||
patterns: [
|
||||
{
|
||||
from: path.join(__dirname, "../", "node_modules", "web-workers"),
|
||||
to: path.join(__dirname, "dist", "itk", "web-workers"),
|
||||
},
|
||||
{
|
||||
from: path.join(__dirname, "../", "node_modules", "itk-image-io"),
|
||||
to: path.join(__dirname, "dist", "itk", "image-io"),
|
||||
},
|
||||
{
|
||||
from: path.join(__dirname, "../", "node_modules", "itk-mesh-io"),
|
||||
to: path.join(__dirname, "dist", "itk", "mesh-io"),
|
||||
},
|
||||
],
|
||||
}),
|
||||
],
|
||||
};
|
||||
|
||||
|
|
|
|||
|
|
@ -20,7 +20,7 @@ interface Configuration extends WebpackConfiguration {
|
|||
devServer?: WebpackDevServerConfiguration;
|
||||
}
|
||||
|
||||
const host = "0.0.0.0";
|
||||
const host = "127.0.0.1";
|
||||
const port = 9000;
|
||||
|
||||
// 合并公共配置,并添加开发环境配置
|
||||
|
|
|
|||
0
apps/aorta/src/global.d.ts
vendored
0
apps/aorta/src/global.d.ts
vendored
|
|
@ -83,8 +83,8 @@ export const LoginForm = (props: LoginFormProps) => {
|
|||
rules={[
|
||||
{
|
||||
required: true,
|
||||
// pattern: REG.password,
|
||||
// min: 6,
|
||||
pattern: REG.password,
|
||||
min: 6,
|
||||
max: 20,
|
||||
message: "6-20位，包含 大写、小写、字母、特殊字符",
|
||||
},
|
||||
|
|
|
|||
|
|
@ -14,10 +14,8 @@
|
|||
position: relative;
|
||||
background-size: cover;
|
||||
background-position: center center;
|
||||
min-height: 6rem;
|
||||
cursor: pointer;
|
||||
img{
|
||||
width: 100%;
|
||||
}
|
||||
|
||||
&.active {
|
||||
&::after {
|
||||
|
|
|
|||
|
|
@ -38,20 +38,18 @@ export const ImageItem = (props: ImageItemProps) => {
|
|||
|
||||
const handleFileChange = (event: any) => {
|
||||
if (event.target.files && event.target.files[0]) {
|
||||
|
||||
|
||||
// const fd = new FormData();
|
||||
// fd.append("file", event.target.files[0]);
|
||||
// axios
|
||||
// .post("/api/report/upload", fd, {
|
||||
// headers: { "Content-Type": "multipart/form-data" },
|
||||
// })
|
||||
// .then((res) => {
|
||||
// const { objectName } = res.data;
|
||||
// setImgSrc(`/api/report/img/${objectName}`);
|
||||
// });
|
||||
const fd = new FormData();
|
||||
fd.append("file", event.target.files[0]);
|
||||
axios
|
||||
.post("/api/report/upload", fd, {
|
||||
headers: { "Content-Type": "multipart/form-data" },
|
||||
})
|
||||
.then((res) => {
|
||||
const { objectName } = res.data;
|
||||
setImgSrc(`/api/report/img/${objectName}`);
|
||||
});
|
||||
//TODO API接口上传，THEN
|
||||
setImgSrc(URL.createObjectURL(event.target.files[0]));
|
||||
setImgSrc(event.target.result);
|
||||
}
|
||||
};
|
||||
|
||||
|
|
@ -65,10 +63,8 @@ export const ImageItem = (props: ImageItemProps) => {
|
|||
onClick={() => setActionVisible(true)}
|
||||
className={`img ${actionVisible ? "active" : ""}`}
|
||||
ref={imgRef}
|
||||
style={{ ...props.imgStyle }}
|
||||
>
|
||||
<img src={imgSrc} />
|
||||
</div>
|
||||
style={{ ...props.imgStyle, backgroundImage: `url(${imgSrc})` }}
|
||||
></div>
|
||||
)}
|
||||
{actionVisible && (
|
||||
<section ref={actionRef}>
|
||||
|
|
|
|||
|
|
@ -1,18 +1,13 @@
|
|||
.page-head {
|
||||
display: flex;
|
||||
align-items: center;
|
||||
justify-content: space-between;
|
||||
text-align: right;
|
||||
line-height: 1;
|
||||
padding-bottom: 0.57rem;
|
||||
border-bottom: 0.07rem solid var(--color-bg-primary);
|
||||
margin-bottom: 2rem;
|
||||
|
||||
>span{
|
||||
color: red;
|
||||
}
|
||||
|
||||
.logo-group {
|
||||
display: inline-flex;
|
||||
align-items: center;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -7,7 +7,6 @@ interface PaperHeadProps {
|
|||
export const PaperHead = (props: PaperHeadProps) => {
|
||||
return (
|
||||
<div className="page-head">
|
||||
<span>本报告为demo版本，仅供参考，可提供定制</span>
|
||||
<div className="logo-group">
|
||||
<svg
|
||||
viewBox="0 0 45 47"
|
||||
|
|
|
|||
|
|
@ -31,14 +31,14 @@ interface DoctorProps {
|
|||
}
|
||||
|
||||
export const ReportFullVersion = (props: DoctorProps) => {
|
||||
const [date, totalPageNum] = ["2023-12-12", 18];
|
||||
const [date, totalPageNum] = ["2023-06-14", 21];
|
||||
const [completed, setCompleted] = useState(0);
|
||||
|
||||
// useEffect(() => {
|
||||
// axios.get("/api/aorta/report/root").then((res) => {
|
||||
// console.log(res);
|
||||
// });
|
||||
// }, []);
|
||||
useEffect(() => {
|
||||
axios.get("/api/aorta/report/root").then((res) => {
|
||||
console.log(res);
|
||||
});
|
||||
}, []);
|
||||
|
||||
/**
|
||||
* 下载pdf
|
||||
|
|
|
|||
|
|
@ -48,6 +48,7 @@ export const LeftCoronarySinus = (props: LeftCoronarySinusProps) => {
|
|||
<ImageItem
|
||||
title="左冠窦瓣叶长度"
|
||||
src={src}
|
||||
imgStyle={{ height: "6.43rem" }}
|
||||
/>
|
||||
<Reference
|
||||
style={{ position: "absolute", bottom: "3rem" }}
|
||||
|
|
|
|||
|
|
@ -31,6 +31,7 @@ export const NoCoronarySinus = (props: NoCoronarySinusProps) => {
|
|||
<ImageItem
|
||||
title="无冠窦瓣叶长度"
|
||||
src={src}
|
||||
imgStyle={{ height: "6.43rem" }}
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
|
|
|
|||
|
|
@ -32,6 +32,7 @@ export const RightCoronarySinus = (props: RightCoronarySinusProps) => {
|
|||
<ImageItem
|
||||
title="左冠窦瓣叶长度"
|
||||
src={src}
|
||||
imgStyle={{ height: "6.43rem" }}
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
|
|
|
|||
|
|
@ -1,72 +0,0 @@
|
|||
import { metaData } from "@cornerstonejs/core";
|
||||
import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
|
||||
|
||||
/**
|
||||
* Preloads imageIds metadata in memory
|
||||
**/
|
||||
export const prefetchMetadataInformation = async (
|
||||
imageIdsToPrefetch: string[]
|
||||
): Promise<void> => {
|
||||
for (let i = 0; i < imageIdsToPrefetch.length; i++) {
|
||||
await cornerstoneDICOMImageLoader.wadouri.loadImage(imageIdsToPrefetch[i])
|
||||
.promise;
|
||||
}
|
||||
};
|
||||
|
||||
interface FrameInformation {
|
||||
frameIndex: number;
|
||||
imageIdFrameless: string;
|
||||
}
|
||||
|
||||
export const getFrameInformation = (imageId: string): FrameInformation => {
|
||||
if (imageId.includes("wadors:")) {
|
||||
const frameIndex = imageId.indexOf("/frames/");
|
||||
const imageIdFrameless =
|
||||
frameIndex > 0 ? imageId.slice(0, frameIndex + 8) : imageId;
|
||||
return {
|
||||
frameIndex,
|
||||
imageIdFrameless,
|
||||
};
|
||||
} else {
|
||||
const frameIndex = imageId.indexOf("&frame=");
|
||||
let imageIdFrameless =
|
||||
frameIndex > 0 ? imageId.slice(0, frameIndex + 7) : imageId;
|
||||
if (!imageIdFrameless.includes("&frame=")) {
|
||||
imageIdFrameless += "&frame=";
|
||||
}
|
||||
return {
|
||||
frameIndex,
|
||||
imageIdFrameless,
|
||||
};
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* Converts a list of imageids possibly referring to multiframe dicom images
|
||||
* into a list of imageids where each imageid refers to one frame.
|
||||
* For each imageId representing a multiframe image with n frames,
|
||||
* it creates n new imageids, one for each frame, and returns the new list of imageids.
|
||||
* If a particular imageid does not refer to a multiframe image data, it will be just copied into the new list.
|
||||
* @returns new list of imageids where each imageid represents a frame
|
||||
*/
|
||||
export const convertMultiframeImageIds = (imageIds: string[]): string[] => {
|
||||
const newImageIds: string[] = [];
|
||||
imageIds.forEach((imageId) => {
|
||||
const { imageIdFrameless } = getFrameInformation(imageId);
|
||||
const instanceMetaData = metaData.get("multiframeModule", imageId);
|
||||
if (
|
||||
instanceMetaData &&
|
||||
instanceMetaData.NumberOfFrames &&
|
||||
instanceMetaData.NumberOfFrames > 1
|
||||
) {
|
||||
const numberOfFrames = instanceMetaData.NumberOfFrames;
|
||||
for (let i = 0; i < numberOfFrames; i++) {
|
||||
const newImageId = imageIdFrameless + (i + 1);
|
||||
newImageIds.push(newImageId);
|
||||
}
|
||||
} else {
|
||||
newImageIds.push(imageId);
|
||||
}
|
||||
});
|
||||
return newImageIds;
|
||||
};
|
||||
|
|
@ -1,139 +0,0 @@
|
|||
import { api } from "dicomweb-client";
|
||||
import dcmjs from "dcmjs";
|
||||
import { utilities } from "@cornerstonejs/core";
|
||||
import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
|
||||
import { getPixelSpacingInformation } from "./getPixelSpacingInformation";
|
||||
import { convertMultiframeImageIds } from "./convertMultiframeImageIds";
|
||||
import { removeInvalidTags } from "./removeInvalidTags";
|
||||
import getPTImageIdInstanceMetadata from "./getPTImageIdInstanceMetadata";
|
||||
import { calculateSUVScalingFactors } from "@cornerstonejs/calculate-suv";
|
||||
import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider";
|
||||
|
||||
const { DicomMetaDictionary } = dcmjs.data;
|
||||
const { calibratedPixelSpacingMetadataProvider } = utilities;
|
||||
|
||||
const SOP_INSTANCE_UID = "00080018";
|
||||
const SERIES_INSTANCE_UID = "0020000E";
|
||||
const MODALITY = "00080060";
|
||||
|
||||
interface CreateImageIdsAndCacheMetaDataOptions {
|
||||
StudyInstanceUID: string;
|
||||
SeriesInstanceUID: string;
|
||||
SOPInstanceUID?: string | null;
|
||||
wadoRsRoot: string;
|
||||
client?: api.DICOMwebClient | null;
|
||||
}
|
||||
|
||||
/**
|
||||
* 从 DICOMweb 服务创建图像 ID 并缓存相关元数据。
|
||||
*
|
||||
* @param options - 包含图像和 DICOMweb 服务信息的对象
|
||||
* @returns 图像 ID 数组
|
||||
*/
|
||||
export const createImageIdsAndCacheMetaData = async (
|
||||
options: CreateImageIdsAndCacheMetaDataOptions
|
||||
): Promise<string[]> => {
|
||||
const client =
|
||||
options.client ||
|
||||
new api.DICOMwebClient({ url: options.wadoRsRoot, singlepart: true });
|
||||
|
||||
try {
|
||||
const instances = await client.retrieveSeriesMetadata({
|
||||
studyInstanceUID: options.StudyInstanceUID,
|
||||
seriesInstanceUID: options.SeriesInstanceUID,
|
||||
});
|
||||
|
||||
const modality = (instances[0] as unknown as any)[MODALITY].Value[0];
|
||||
console.log("modality", modality);
|
||||
|
||||
let imageIds = instances.map((instanceMetaData: any) => {
|
||||
const SeriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0];
|
||||
const SOPInstanceUIDToUse =
|
||||
options.SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0];
|
||||
|
||||
const prefix = "wadors:";
|
||||
|
||||
const imageId =
|
||||
prefix +
|
||||
options.wadoRsRoot +
|
||||
"/studies/" +
|
||||
options.StudyInstanceUID +
|
||||
"/series/" +
|
||||
SeriesInstanceUID +
|
||||
"/instances/" +
|
||||
SOPInstanceUIDToUse +
|
||||
"/frames/1";
|
||||
|
||||
cornerstoneDICOMImageLoader.wadors.metaDataManager.add(
|
||||
imageId,
|
||||
instanceMetaData
|
||||
);
|
||||
return imageId;
|
||||
});
|
||||
|
||||
imageIds = convertMultiframeImageIds(imageIds);
|
||||
|
||||
imageIds.forEach((imageId) => {
|
||||
let instanceMetaData =
|
||||
cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId);
|
||||
|
||||
instanceMetaData = removeInvalidTags(instanceMetaData);
|
||||
|
||||
if (instanceMetaData) {
|
||||
const metadata =
|
||||
DicomMetaDictionary.naturalizeDataset(instanceMetaData);
|
||||
const pixelSpacing = getPixelSpacingInformation(metadata) as Number[];
|
||||
|
||||
if (pixelSpacing) {
|
||||
// FIXME: cornerstone类型定义有问题，这里.add方法缺少type属性
|
||||
calibratedPixelSpacingMetadataProvider.add(imageId, {
|
||||
// @ts-ignore
|
||||
rowPixelSpacing: pixelSpacing[0],
|
||||
// @ts-ignore
|
||||
columnPixelSpacing: pixelSpacing[1],
|
||||
});
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
if (modality === "PT") {
|
||||
const InstanceMetadataArray: any = [];
|
||||
imageIds.forEach((imageId) => {
|
||||
const instanceMetadata = getPTImageIdInstanceMetadata(imageId);
|
||||
|
||||
// TODO: Temporary fix because static-wado is producing a string, not an array of values
|
||||
// (or maybe dcmjs isn't parsing it correctly?)
|
||||
// It's showing up like 'DECY\\ATTN\\SCAT\\DTIM\\RAN\\RADL\\DCAL\\SLSENS\\NORM'
|
||||
// but calculate-suv expects ['DECY', 'ATTN', ...]
|
||||
if (typeof instanceMetadata.CorrectedImage === "string") {
|
||||
instanceMetadata.CorrectedImage =
|
||||
instanceMetadata.CorrectedImage.split("\\");
|
||||
}
|
||||
|
||||
if (instanceMetadata) {
|
||||
InstanceMetadataArray.push(instanceMetadata);
|
||||
}
|
||||
});
|
||||
if (InstanceMetadataArray.length) {
|
||||
try {
|
||||
const suvScalingFactors = calculateSUVScalingFactors(
|
||||
InstanceMetadataArray
|
||||
);
|
||||
InstanceMetadataArray.forEach((instanceMetadata, index) => {
|
||||
ptScalingMetaDataProvider.addInstance(
|
||||
imageIds[index],
|
||||
suvScalingFactors[index]
|
||||
);
|
||||
});
|
||||
} catch (error) {
|
||||
console.log(error);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return imageIds;
|
||||
} catch (error) {
|
||||
console.log(error);
|
||||
throw new Error("PACS 中数据不存在");
|
||||
}
|
||||
};
|
||||
|
|
@ -1,211 +0,0 @@
|
|||
import { metaData } from "@cornerstonejs/core";
|
||||
import type { InstanceMetadata } from "@cornerstonejs/calculate-suv";
|
||||
|
||||
export default function getPTImageIdInstanceMetadata(
|
||||
imageId: string
|
||||
): InstanceMetadata {
|
||||
const petSequenceModule = metaData.get("petIsotopeModule", imageId);
|
||||
const generalSeriesModule = metaData.get("generalSeriesModule", imageId);
|
||||
const patientStudyModule = metaData.get("patientStudyModule", imageId);
|
||||
|
||||
const ptSeriesModule = metaData.get("petSeriesModule", imageId);
|
||||
const ptImageModule = metaData.get("petImageModule", imageId);
|
||||
|
||||
if (!petSequenceModule) {
|
||||
throw new Error("petSequenceModule metadata is required");
|
||||
}
|
||||
|
||||
const radiopharmaceuticalInfo = petSequenceModule.radiopharmaceuticalInfo;
|
||||
|
||||
const { seriesDate, seriesTime, acquisitionDate, acquisitionTime } =
|
||||
generalSeriesModule;
|
||||
const { patientWeight } = patientStudyModule;
|
||||
const { correctedImage, units, decayCorrection } = ptSeriesModule;
|
||||
|
||||
if (
|
||||
seriesDate === undefined ||
|
||||
seriesTime === undefined ||
|
||||
patientWeight === undefined ||
|
||||
acquisitionDate === undefined ||
|
||||
acquisitionTime === undefined ||
|
||||
correctedImage === undefined ||
|
||||
units === undefined ||
|
||||
decayCorrection === undefined ||
|
||||
radiopharmaceuticalInfo.radionuclideTotalDose === undefined ||
|
||||
radiopharmaceuticalInfo.radionuclideHalfLife === undefined ||
|
||||
(radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime === undefined &&
|
||||
seriesDate === undefined &&
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime === undefined)
|
||||
//
|
||||
) {
|
||||
throw new Error("required metadata are missing");
|
||||
}
|
||||
|
||||
const instanceMetadata: InstanceMetadata = {
|
||||
CorrectedImage: correctedImage,
|
||||
Units: units,
|
||||
RadionuclideHalfLife: radiopharmaceuticalInfo.radionuclideHalfLife,
|
||||
RadionuclideTotalDose: radiopharmaceuticalInfo.radionuclideTotalDose,
|
||||
DecayCorrection: decayCorrection,
|
||||
PatientWeight: patientWeight,
|
||||
SeriesDate: seriesDate,
|
||||
SeriesTime: seriesTime,
|
||||
AcquisitionDate: acquisitionDate,
|
||||
AcquisitionTime: acquisitionTime,
|
||||
};
|
||||
|
||||
if (
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime &&
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== undefined &&
|
||||
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime === "string"
|
||||
) {
|
||||
instanceMetadata.RadiopharmaceuticalStartDateTime =
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime;
|
||||
}
|
||||
|
||||
if (
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime &&
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== undefined &&
|
||||
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== "string"
|
||||
) {
|
||||
const dateString = convertInterfaceDateToString(
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime
|
||||
);
|
||||
instanceMetadata.RadiopharmaceuticalStartDateTime = dateString;
|
||||
}
|
||||
|
||||
if (
|
||||
instanceMetadata.AcquisitionDate &&
|
||||
instanceMetadata.AcquisitionDate !== undefined &&
|
||||
typeof instanceMetadata.AcquisitionDate !== "string"
|
||||
) {
|
||||
const dateString = convertInterfaceDateToString(
|
||||
instanceMetadata.AcquisitionDate
|
||||
);
|
||||
instanceMetadata.AcquisitionDate = dateString;
|
||||
}
|
||||
|
||||
if (
|
||||
instanceMetadata.SeriesDate &&
|
||||
instanceMetadata.SeriesDate !== undefined &&
|
||||
typeof instanceMetadata.SeriesDate !== "string"
|
||||
) {
|
||||
const dateString = convertInterfaceDateToString(
|
||||
instanceMetadata.SeriesDate
|
||||
);
|
||||
instanceMetadata.SeriesDate = dateString;
|
||||
}
|
||||
|
||||
if (
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime &&
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== undefined &&
|
||||
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartTime === "string"
|
||||
) {
|
||||
instanceMetadata.RadiopharmaceuticalStartTime =
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime;
|
||||
}
|
||||
|
||||
if (
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime &&
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== undefined &&
|
||||
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== "string"
|
||||
) {
|
||||
const timeString = convertInterfaceTimeToString(
|
||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime
|
||||
);
|
||||
instanceMetadata.RadiopharmaceuticalStartTime = timeString;
|
||||
}
|
||||
|
||||
if (
|
||||
instanceMetadata.AcquisitionTime &&
|
||||
instanceMetadata.AcquisitionTime !== undefined &&
|
||||
typeof instanceMetadata.AcquisitionTime !== "string"
|
||||
) {
|
||||
const timeString = convertInterfaceTimeToString(
|
||||
instanceMetadata.AcquisitionTime
|
||||
);
|
||||
instanceMetadata.AcquisitionTime = timeString;
|
||||
}
|
||||
|
||||
if (
|
||||
instanceMetadata.SeriesTime &&
|
||||
instanceMetadata.SeriesTime !== undefined &&
|
||||
typeof instanceMetadata.SeriesTime !== "string"
|
||||
) {
|
||||
const timeString = convertInterfaceTimeToString(
|
||||
instanceMetadata.SeriesTime
|
||||
);
|
||||
instanceMetadata.SeriesTime = timeString;
|
||||
}
|
||||
|
||||
if (
|
||||
ptImageModule.frameReferenceTime &&
|
||||
ptImageModule.frameReferenceTime !== undefined
|
||||
) {
|
||||
instanceMetadata.FrameReferenceTime = ptImageModule.frameReferenceTime;
|
||||
}
|
||||
|
||||
if (
|
||||
ptImageModule.actualFrameDuration &&
|
||||
ptImageModule.actualFrameDuration !== undefined
|
||||
) {
|
||||
instanceMetadata.ActualFrameDuration = ptImageModule.actualFrameDuration;
|
||||
}
|
||||
|
||||
if (
|
||||
patientStudyModule.patientSex &&
|
||||
patientStudyModule.patientSex !== undefined
|
||||
) {
|
||||
instanceMetadata.PatientSex = patientStudyModule.patientSex;
|
||||
}
|
||||
|
||||
if (
|
||||
patientStudyModule.patientSize &&
|
||||
patientStudyModule.patientSize !== undefined
|
||||
) {
|
||||
instanceMetadata.PatientSize = patientStudyModule.patientSize;
|
||||
}
|
||||
|
||||
// Todo: add private tags
|
||||
// if (
|
||||
// dicomMetaData['70531000'] ||
|
||||
// dicomMetaData['70531000'] !== undefined ||
|
||||
// dicomMetaData['70531009'] ||
|
||||
// dicomMetaData['70531009'] !== undefined
|
||||
// ) {
|
||||
// const philipsPETPrivateGroup: PhilipsPETPrivateGroup = {
|
||||
// SUVScaleFactor: dicomMetaData['70531000'],
|
||||
// ActivityConcentrationScaleFactor: dicomMetaData['70531009'],
|
||||
// };
|
||||
// instanceMetadata.PhilipsPETPrivateGroup = philipsPETPrivateGroup;
|
||||
// }
|
||||
|
||||
// if (dicomMetaData['0009100d'] && dicomMetaData['0009100d'] !== undefined) {
|
||||
// instanceMetadata.GEPrivatePostInjectionDateTime = dicomMetaData['0009100d'];
|
||||
// }
|
||||
|
||||
return instanceMetadata;
|
||||
}
|
||||
|
||||
function convertInterfaceTimeToString(time): string {
|
||||
const hours = `${time.hours || "00"}`.padStart(2, "0");
|
||||
const minutes = `${time.minutes || "00"}`.padStart(2, "0");
|
||||
const seconds = `${time.seconds || "00"}`.padStart(2, "0");
|
||||
|
||||
const fractionalSeconds = `${time.fractionalSeconds || "000000"}`.padEnd(
|
||||
6,
|
||||
"0"
|
||||
);
|
||||
|
||||
const timeString = `${hours}${minutes}${seconds}.${fractionalSeconds}`;
|
||||
return timeString;
|
||||
}
|
||||
|
||||
function convertInterfaceDateToString(date): string {
|
||||
const month = `${date.month}`.padStart(2, "0");
|
||||
const day = `${date.day}`.padStart(2, "0");
|
||||
const dateString = `${date.year}${month}${day}`;
|
||||
return dateString;
|
||||
}
|
||||
|
||||
export { getPTImageIdInstanceMetadata };
|
||||
|
|
@ -1,139 +0,0 @@
|
|||
interface DICOMInstance {
|
||||
PixelSpacing?: number[];
|
||||
ImagerPixelSpacing?: number[];
|
||||
SOPClassUID?: string;
|
||||
PixelSpacingCalibrationType?: string;
|
||||
PixelSpacingCalibrationDescription?: string;
|
||||
EstimatedRadiographicMagnificationFactor?: number;
|
||||
SequenceOfUltrasoundRegions?: {
|
||||
PhysicalDeltaX: number;
|
||||
PhysicalDeltaY: number;
|
||||
}[]; // 根据实际需要调整类型
|
||||
}
|
||||
|
||||
interface PixelSpacingResult {
|
||||
PixelSpacing?: number[];
|
||||
type?: string;
|
||||
isProjection?: boolean;
|
||||
PixelSpacingCalibrationType?: string;
|
||||
PixelSpacingCalibrationDescription?: string;
|
||||
}
|
||||
|
||||
/**
|
||||
* 获取像素间距信息。
|
||||
* 此函数根据 DICOM 实例的不同属性来确定适当的像素间距。
|
||||
*
|
||||
* @param instance - DICOM 实例对象
|
||||
* @returns 像素间距信息
|
||||
*/
|
||||
export const getPixelSpacingInformation = (
|
||||
instance: DICOMInstance
|
||||
): PixelSpacingResult | number[] | undefined => {
|
||||
const projectionRadiographSOPClassUIDs: string[] = [
|
||||
"1.2.840.10008.5.1.4.1.1.1", // CR Image Storage
|
||||
"1.2.840.10008.5.1.4.1.1.1.1", // Digital X-Ray Image Storage – for Presentation
|
||||
"1.2.840.10008.5.1.4.1.1.1.1.1", // Digital X-Ray Image Storage – for Processing
|
||||
"1.2.840.10008.5.1.4.1.1.1.2", // Digital Mammography X-Ray Image Storage – for Presentation
|
||||
"1.2.840.10008.5.1.4.1.1.1.2.1", // Digital Mammography X-Ray Image Storage – for Processing
|
||||
"1.2.840.10008.5.1.4.1.1.1.3", // Digital Intra – oral X-Ray Image Storage – for Presentation
|
||||
"1.2.840.10008.5.1.4.1.1.1.3.1", // Digital Intra – oral X-Ray Image Storage – for Processing
|
||||
"1.2.840.10008.5.1.4.1.1.12.1", // X-Ray Angiographic Image Storage
|
||||
"1.2.840.10008.5.1.4.1.1.12.1.1", // Enhanced XA Image Storage
|
||||
"1.2.840.10008.5.1.4.1.1.12.2", // X-Ray Radiofluoroscopic Image Storage
|
||||
"1.2.840.10008.5.1.4.1.1.12.2.1", // Enhanced XRF Image Storage
|
||||
"1.2.840.10008.5.1.4.1.1.12.3", // X-Ray Angiographic Bi-plane Image Storage Retired
|
||||
];
|
||||
|
||||
const {
|
||||
PixelSpacing,
|
||||
ImagerPixelSpacing,
|
||||
SOPClassUID,
|
||||
PixelSpacingCalibrationType,
|
||||
PixelSpacingCalibrationDescription,
|
||||
EstimatedRadiographicMagnificationFactor,
|
||||
SequenceOfUltrasoundRegions,
|
||||
} = instance;
|
||||
|
||||
const isProjection = SOPClassUID
|
||||
? projectionRadiographSOPClassUIDs.includes(SOPClassUID)
|
||||
: false;
|
||||
|
||||
const TYPES = {
|
||||
NOT_APPLICABLE: "NOT_APPLICABLE",
|
||||
UNKNOWN: "UNKNOWN",
|
||||
CALIBRATED: "CALIBRATED",
|
||||
DETECTOR: "DETECTOR",
|
||||
};
|
||||
|
||||
if (!isProjection) {
|
||||
return PixelSpacing;
|
||||
}
|
||||
|
||||
if (isProjection && !ImagerPixelSpacing) {
|
||||
return {
|
||||
PixelSpacing,
|
||||
type: TYPES.UNKNOWN,
|
||||
isProjection,
|
||||
};
|
||||
} else if (
|
||||
PixelSpacing &&
|
||||
ImagerPixelSpacing &&
|
||||
PixelSpacing.join() === ImagerPixelSpacing.join()
|
||||
) {
|
||||
return {
|
||||
PixelSpacing,
|
||||
type: TYPES.DETECTOR,
|
||||
isProjection,
|
||||
};
|
||||
} else if (
|
||||
PixelSpacing &&
|
||||
ImagerPixelSpacing &&
|
||||
PixelSpacing.join() !== ImagerPixelSpacing.join()
|
||||
) {
|
||||
return {
|
||||
PixelSpacing,
|
||||
type: TYPES.CALIBRATED,
|
||||
isProjection,
|
||||
PixelSpacingCalibrationType,
|
||||
PixelSpacingCalibrationDescription,
|
||||
};
|
||||
} else if (!PixelSpacing && ImagerPixelSpacing) {
|
||||
let CorrectedImagerPixelSpacing = ImagerPixelSpacing;
|
||||
if (EstimatedRadiographicMagnificationFactor) {
|
||||
CorrectedImagerPixelSpacing = ImagerPixelSpacing.map(
|
||||
(pixelSpacing) =>
|
||||
pixelSpacing / EstimatedRadiographicMagnificationFactor
|
||||
);
|
||||
} else {
|
||||
console.warn(
|
||||
"EstimatedRadiographicMagnificationFactor was not present. Unable to correct ImagerPixelSpacing."
|
||||
);
|
||||
}
|
||||
|
||||
return {
|
||||
PixelSpacing: CorrectedImagerPixelSpacing,
|
||||
isProjection,
|
||||
};
|
||||
} else if (
|
||||
SequenceOfUltrasoundRegions &&
|
||||
Array.isArray(SequenceOfUltrasoundRegions) &&
|
||||
SequenceOfUltrasoundRegions.length > 0
|
||||
) {
|
||||
const { PhysicalDeltaX, PhysicalDeltaY } = SequenceOfUltrasoundRegions[0];
|
||||
const USPixelSpacing = [PhysicalDeltaX * 10, PhysicalDeltaY * 10];
|
||||
|
||||
return {
|
||||
PixelSpacing: USPixelSpacing,
|
||||
};
|
||||
} else if (isProjection && !ImagerPixelSpacing) {
|
||||
return {
|
||||
PixelSpacing,
|
||||
type: TYPES.NOT_APPLICABLE,
|
||||
isProjection,
|
||||
};
|
||||
}
|
||||
|
||||
console.warn(
|
||||
"Unknown combination of PixelSpacing and ImagerPixelSpacing identified. Unable to determine spacing."
|
||||
);
|
||||
};
|
||||
|
|
@ -1,10 +0,0 @@
|
|||
import { initCornerstoneDICOMImageLoader } from "./initCornerstoneDicomImageLoader";
|
||||
import initVolumeLoader from "./initVolumeLoader";
|
||||
import { init as csRenderInit } from "@cornerstonejs/core";
|
||||
|
||||
// 入口
|
||||
export const initCornerstone = async () => {
|
||||
initCornerstoneDICOMImageLoader();
|
||||
initVolumeLoader();
|
||||
await csRenderInit();
|
||||
};
|
||||
|
|
@ -1,46 +0,0 @@
|
|||
import dicomParser from "dicom-parser";
|
||||
import * as cornerstone from "@cornerstonejs/core";
|
||||
import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
|
||||
|
||||
window.cornerstone = cornerstone;
|
||||
|
||||
export const initCornerstoneDICOMImageLoader = () => {
|
||||
const { preferSizeOverAccuracy, useNorm16Texture } =
|
||||
cornerstone.getConfiguration().rendering;
|
||||
|
||||
cornerstone.setConfiguration({
|
||||
detectGPUConfig: {
|
||||
benchmarksURL: "http://localhost:9000",
|
||||
},
|
||||
rendering: cornerstone.getConfiguration().rendering,
|
||||
});
|
||||
|
||||
cornerstoneDICOMImageLoader.external.cornerstone = cornerstone;
|
||||
cornerstoneDICOMImageLoader.external.dicomParser = dicomParser;
|
||||
cornerstoneDICOMImageLoader.configure({
|
||||
useWebWorkers: true,
|
||||
decodeConfig: {
|
||||
convertFloatPixelDataToInt: false,
|
||||
use16BitDataType: preferSizeOverAccuracy || useNorm16Texture,
|
||||
},
|
||||
});
|
||||
|
||||
let maxWebWorkers = 1;
|
||||
|
||||
if (navigator.hardwareConcurrency) {
|
||||
maxWebWorkers = Math.min(navigator.hardwareConcurrency, 7);
|
||||
}
|
||||
|
||||
const config = {
|
||||
maxWebWorkers,
|
||||
startWebWorkersOnDemand: false,
|
||||
taskConfiguration: {
|
||||
decodeTask: {
|
||||
initializeCodecsOnStartup: false,
|
||||
strict: false,
|
||||
},
|
||||
},
|
||||
};
|
||||
|
||||
cornerstoneDICOMImageLoader.webWorkerManager.initialize(config);
|
||||
};
|
||||
|
|
@ -1,17 +0,0 @@
|
|||
import * as cornerstone from "@cornerstonejs/core";
|
||||
import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider";
|
||||
|
||||
const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities;
|
||||
|
||||
export default function initProviders() {
|
||||
cornerstone.metaData.addProvider(
|
||||
ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider),
|
||||
10000
|
||||
);
|
||||
cornerstone.metaData.addProvider(
|
||||
calibratedPixelSpacingMetadataProvider.get.bind(
|
||||
calibratedPixelSpacingMetadataProvider
|
||||
),
|
||||
11000
|
||||
);
|
||||
}
|
||||
|
|
@ -1,19 +0,0 @@
|
|||
import { volumeLoader } from "@cornerstonejs/core";
|
||||
import {
|
||||
cornerstoneStreamingImageVolumeLoader,
|
||||
cornerstoneStreamingDynamicImageVolumeLoader,
|
||||
} from "@cornerstonejs/streaming-image-volume-loader";
|
||||
|
||||
export default function initVolumeLoader() {
|
||||
volumeLoader.registerUnknownVolumeLoader(
|
||||
cornerstoneStreamingImageVolumeLoader
|
||||
);
|
||||
volumeLoader.registerVolumeLoader(
|
||||
"cornerstoneStreamingImageVolume",
|
||||
cornerstoneStreamingImageVolumeLoader
|
||||
);
|
||||
volumeLoader.registerVolumeLoader(
|
||||
"cornerstoneStreamingDynamicImageVolume",
|
||||
cornerstoneStreamingDynamicImageVolumeLoader
|
||||
);
|
||||
}
|
||||
|
|
@ -1,17 +0,0 @@
|
|||
import { utilities as csUtils } from "@cornerstonejs/core";
|
||||
|
||||
const scalingPerImageId = {};
|
||||
|
||||
function addInstance(imageId, scalingMetaData) {
|
||||
const imageURI = csUtils.imageIdToURI(imageId);
|
||||
scalingPerImageId[imageURI] = scalingMetaData;
|
||||
}
|
||||
|
||||
function get(type, imageId) {
|
||||
if (type === "scalingModule") {
|
||||
const imageURI = csUtils.imageIdToURI(imageId);
|
||||
return scalingPerImageId[imageURI];
|
||||
}
|
||||
}
|
||||
|
||||
export default { addInstance, get };
|
||||
|
|
@ -1,33 +0,0 @@
|
|||
/**
|
||||
* Removes invalid tags from a metadata object and returns a new object.
|
||||
*
|
||||
* This function currently removes tags that have `null` or `undefined` values.
|
||||
* Removing these values is important to prevent errors when processing
|
||||
* the metadata, such as when calling `naturalizeDataset(...)`.
|
||||
*
|
||||
* The performance of this function has been considered. Validating each
|
||||
* tag ID with a regex significantly reduces the function's speed, so this
|
||||
* approach is avoided. The function is designed to be efficient, with an
|
||||
* average runtime of around +12ms per 1000 images, though this can vary
|
||||
* depending on the machine.
|
||||
*
|
||||
* @param srcMetadata - The source metadata object containing the tags.
|
||||
* @returns A new metadata object with invalid tags removed.
|
||||
*/
|
||||
export const removeInvalidTags = (
|
||||
srcMetadata: Record<string, any>
|
||||
): Record<string, any> => {
|
||||
const dstMetadata: Record<string, any> = Object.create(null);
|
||||
const tagIds = Object.keys(srcMetadata);
|
||||
let tagValue: any;
|
||||
|
||||
tagIds.forEach((tagId) => {
|
||||
tagValue = srcMetadata[tagId];
|
||||
|
||||
if (tagValue !== undefined && tagValue !== null) {
|
||||
dstMetadata[tagId] = tagValue;
|
||||
}
|
||||
});
|
||||
|
||||
return dstMetadata;
|
||||
};
|
||||
|
|
@ -1,243 +0,0 @@
|
|||
import { useEffect, useRef } from "react";
|
||||
import initDemo from "./util/initDemo.js";
|
||||
import {
|
||||
RenderingEngine,
|
||||
Types,
|
||||
Enums,
|
||||
setVolumesForViewports,
|
||||
volumeLoader,
|
||||
getRenderingEngine,
|
||||
} from "@cornerstonejs/core";
|
||||
import * as cornerstoneTools from "@cornerstonejs/tools";
|
||||
import createImageIdsAndCacheMetaData from "./util/createImageIdsAndCacheMetaData";
|
||||
import { PublicViewportInput } from "@cornerstonejs/core/dist/types/types/IViewport.js";
|
||||
import setCtTransferFunctionForVolumeActor from "./util/setCtTransferFunctionForVolumeActor";
|
||||
import * as cornerstone from "@cornerstonejs/core";
|
||||
|
||||
const {
|
||||
ToolGroupManager,
|
||||
Enums: csToolsEnums,
|
||||
CrosshairsTool,
|
||||
StackScrollMouseWheelTool,
|
||||
} = cornerstoneTools;
|
||||
|
||||
const { ViewportType } = Enums;
|
||||
|
||||
interface CrosshairMprProps {
|
||||
children?: JSX.Element;
|
||||
}
|
||||
|
||||
const viewportId1 = "CT_AXIAL";
|
||||
const viewportId2 = "CT_SAGITTAL";
|
||||
const viewportId3 = "CT_CORONAL";
|
||||
const toolGroupId = "group";
|
||||
|
||||
const viewportColors = {
|
||||
[viewportId1]: "rgb(200, 0, 0)",
|
||||
[viewportId2]: "rgb(200, 200, 0)",
|
||||
[viewportId3]: "rgb(0, 200, 0)",
|
||||
};
|
||||
|
||||
const viewportReferenceLineControllable = [
|
||||
viewportId1,
|
||||
viewportId2,
|
||||
viewportId3,
|
||||
];
|
||||
|
||||
const viewportReferenceLineDraggableRotatable = [
|
||||
viewportId1,
|
||||
viewportId2,
|
||||
viewportId3,
|
||||
];
|
||||
|
||||
const viewportReferenceLineSlabThicknessControlsOn = [
|
||||
viewportId1,
|
||||
viewportId2,
|
||||
viewportId3,
|
||||
];
|
||||
|
||||
// Define a unique id for the volume
|
||||
const volumeName = "CT_VOLUME_ID"; // Id of the volume less loader prefix
|
||||
const volumeLoaderScheme = "cornerstoneStreamingImageVolume"; // Loader id which defines which volume loader to use
|
||||
const volumeId = `${volumeLoaderScheme}:${volumeName}`; // VolumeId with loader id + volume id
|
||||
|
||||
function getReferenceLineColor(viewportId) {
|
||||
return viewportColors[viewportId];
|
||||
}
|
||||
|
||||
function getReferenceLineControllable(viewportId) {
|
||||
const index = viewportReferenceLineControllable.indexOf(viewportId);
|
||||
return index !== -1;
|
||||
}
|
||||
|
||||
function getReferenceLineDraggableRotatable(viewportId) {
|
||||
const index = viewportReferenceLineDraggableRotatable.indexOf(viewportId);
|
||||
return index !== -1;
|
||||
}
|
||||
|
||||
function getReferenceLineSlabThicknessControlsOn(viewportId) {
|
||||
const index =
|
||||
viewportReferenceLineSlabThicknessControlsOn.indexOf(viewportId);
|
||||
return index !== -1;
|
||||
}
|
||||
|
||||
const renderingEngineId = "myRenderingEngine";
|
||||
|
||||
export const CrosshairMpr = (props: CrosshairMprProps) => {
|
||||
const viewportId1Ref = useRef(null);
|
||||
const viewportId2Ref = useRef(null);
|
||||
const viewportId3Ref = useRef(null);
|
||||
const renderingEngine = useRef<RenderingEngine>();
|
||||
const imageIds = useRef<string[]>();
|
||||
|
||||
const run = async () => {
|
||||
initDemo();
|
||||
|
||||
// Get Cornerstone imageIds for the source data and fetch metadata into RAM
|
||||
imageIds.current = await createImageIdsAndCacheMetaData({
|
||||
StudyInstanceUID:
|
||||
"1.2.840.113564.345049290535.9692.637552042156233117.433089",
|
||||
SeriesInstanceUID:
|
||||
"1.3.12.2.1107.5.1.4.76315.30000021042706150001900118311",
|
||||
wadoRsRoot: "/dicom-web",
|
||||
});
|
||||
|
||||
// Define a volume in memory
|
||||
const volume = await volumeLoader.createAndCacheVolume(volumeId, {
|
||||
imageIds: imageIds.current ?? [],
|
||||
});
|
||||
|
||||
// Instantiate a rendering engine
|
||||
renderingEngine.current = new RenderingEngine(renderingEngineId);
|
||||
|
||||
// Create the viewports
|
||||
const viewportInputArray: PublicViewportInput[] = [
|
||||
{
|
||||
viewportId: viewportId1,
|
||||
type: ViewportType.ORTHOGRAPHIC,
|
||||
element: viewportId1Ref.current!,
|
||||
defaultOptions: {
|
||||
orientation: Enums.OrientationAxis.AXIAL,
|
||||
background: [0, 0, 0],
|
||||
},
|
||||
},
|
||||
{
|
||||
viewportId: viewportId2,
|
||||
type: ViewportType.ORTHOGRAPHIC,
|
||||
element: viewportId2Ref.current!,
|
||||
defaultOptions: {
|
||||
orientation: Enums.OrientationAxis.SAGITTAL,
|
||||
background: [0, 0, 0],
|
||||
},
|
||||
},
|
||||
{
|
||||
viewportId: viewportId3,
|
||||
type: ViewportType.ORTHOGRAPHIC,
|
||||
element: viewportId3Ref.current!,
|
||||
defaultOptions: {
|
||||
orientation: Enums.OrientationAxis.CORONAL,
|
||||
background: [0, 0, 0],
|
||||
},
|
||||
},
|
||||
];
|
||||
|
||||
renderingEngine.current.setViewports(viewportInputArray);
|
||||
|
||||
console.log(volume);
|
||||
|
||||
// Set the volume to load
|
||||
volume.load();
|
||||
|
||||
// Set volumes on the viewports
|
||||
await setVolumesForViewports(
|
||||
renderingEngine.current,
|
||||
[
|
||||
{
|
||||
volumeId,
|
||||
callback: setCtTransferFunctionForVolumeActor,
|
||||
},
|
||||
],
|
||||
[viewportId1, viewportId2, viewportId3]
|
||||
);
|
||||
|
||||
// Define tool groups to add the segmentation display tool to
|
||||
const toolGroup = ToolGroupManager.createToolGroup(toolGroupId);
|
||||
|
||||
if (toolGroup) {
|
||||
// For the crosshairs to operate, the viewports must currently be
|
||||
// added ahead of setting the tool active. This will be improved in the future.
|
||||
toolGroup.addViewport(viewportId1, renderingEngineId);
|
||||
toolGroup.addViewport(viewportId2, renderingEngineId);
|
||||
toolGroup.addViewport(viewportId3, renderingEngineId);
|
||||
|
||||
// Manipulation Tools
|
||||
toolGroup.addTool(StackScrollMouseWheelTool.toolName);
|
||||
// Add Crosshairs tool and configure it to link the three viewports
|
||||
// These viewports could use different tool groups. See the PET-CT example
|
||||
// for a more complicated used case.
|
||||
|
||||
toolGroup.addTool(CrosshairsTool.toolName, {
|
||||
getReferenceLineColor,
|
||||
getReferenceLineControllable,
|
||||
getReferenceLineDraggableRotatable,
|
||||
getReferenceLineSlabThicknessControlsOn,
|
||||
});
|
||||
|
||||
toolGroup.setToolActive(CrosshairsTool.toolName, {
|
||||
bindings: [{ mouseButton: 1 }],
|
||||
});
|
||||
// As the Stack Scroll mouse wheel is a tool using the `mouseWheelCallback`
|
||||
// hook instead of mouse buttons, it does not need to assign any mouse button.
|
||||
toolGroup.setToolActive(StackScrollMouseWheelTool.toolName);
|
||||
}
|
||||
|
||||
renderingEngine.current.renderViewports([
|
||||
viewportId1,
|
||||
viewportId2,
|
||||
viewportId3,
|
||||
]);
|
||||
};
|
||||
|
||||
useEffect(() => {
|
||||
cornerstoneTools.addTool(StackScrollMouseWheelTool);
|
||||
cornerstoneTools.addTool(CrosshairsTool);
|
||||
console.log("添加tool1");
|
||||
|
||||
run();
|
||||
|
||||
return () => {
|
||||
// TODO: 是否需要写在组件，根据页面需要
|
||||
console.log("卸载tool2");
|
||||
cornerstoneTools.removeTool(StackScrollMouseWheelTool);
|
||||
cornerstoneTools.removeTool(CrosshairsTool);
|
||||
};
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
window.addEventListener("resize", () => {
|
||||
renderingEngine.current?.resize();
|
||||
});
|
||||
}, []);
|
||||
|
||||
const test = () => {
|
||||
// console.log(volumeLoader)
|
||||
console.log(cornerstone.cache.getVolume(volumeId).getScalarData());
|
||||
};
|
||||
|
||||
useEffect(() => {
|
||||
document.addEventListener(Enums.Events.VOLUME_CACHE_VOLUME_ADDED, () => {
|
||||
console.log(111);
|
||||
});
|
||||
}, []);
|
||||
|
||||
return (
|
||||
<div>
|
||||
<div style={{ display: "flex", gap: 20 }}>
|
||||
<div style={{ width: 300, height: 300 }} ref={viewportId1Ref}></div>
|
||||
<div style={{ width: 300, height: 300 }} ref={viewportId2Ref}></div>
|
||||
<div style={{ width: 300, height: 300 }} ref={viewportId3Ref}></div>
|
||||
</div>
|
||||
<button onClick={test}>测试</button>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
|
@ -1,65 +0,0 @@
|
|||
import { metaData } from '@cornerstonejs/core';
|
||||
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
|
||||
/**
|
||||
* preloads imageIds metadata in memory
|
||||
**/
|
||||
async function prefetchMetadataInformation(imageIdsToPrefetch) {
|
||||
for (let i = 0; i < imageIdsToPrefetch.length; i++) {
|
||||
await cornerstoneDICOMImageLoader.wadouri.loadImage(imageIdsToPrefetch[i])
|
||||
.promise;
|
||||
}
|
||||
}
|
||||
|
||||
function getFrameInformation(imageId) {
|
||||
if (imageId.includes('wadors:')) {
|
||||
const frameIndex = imageId.indexOf('/frames/');
|
||||
const imageIdFrameless =
|
||||
frameIndex > 0 ? imageId.slice(0, frameIndex + 8) : imageId;
|
||||
return {
|
||||
frameIndex,
|
||||
imageIdFrameless,
|
||||
};
|
||||
} else {
|
||||
const frameIndex = imageId.indexOf('&frame=');
|
||||
let imageIdFrameless =
|
||||
frameIndex > 0 ? imageId.slice(0, frameIndex + 7) : imageId;
|
||||
if (!imageIdFrameless.includes('&frame=')) {
|
||||
imageIdFrameless = imageIdFrameless + '&frame=';
|
||||
}
|
||||
return {
|
||||
frameIndex,
|
||||
imageIdFrameless,
|
||||
};
|
||||
}
|
||||
}
|
||||
/**
|
||||
* Receives a list of imageids possibly referring to multiframe dicom images
|
||||
* and returns a list of imageid where each imageid referes to one frame.
|
||||
* For each imageId representing a multiframe image with n frames,
|
||||
* it will create n new imageids, one for each frame, and returns the new list of imageids
|
||||
* If a particular imageid no refer to a mutiframe image data, it will be just copied into the new list
|
||||
* @returns new list of imageids where each imageid represents a frame
|
||||
*/
|
||||
function convertMultiframeImageIds(imageIds) {
|
||||
const newImageIds = [];
|
||||
imageIds.forEach((imageId) => {
|
||||
const { imageIdFrameless } = getFrameInformation(imageId);
|
||||
const instanceMetaData = metaData.get('multiframeModule', imageId);
|
||||
if (
|
||||
instanceMetaData &&
|
||||
instanceMetaData.NumberOfFrames &&
|
||||
instanceMetaData.NumberOfFrames > 1
|
||||
) {
|
||||
const NumberOfFrames = instanceMetaData.NumberOfFrames;
|
||||
for (let i = 0; i < NumberOfFrames; i++) {
|
||||
const newImageId = imageIdFrameless + (i + 1);
|
||||
newImageIds.push(newImageId);
|
||||
}
|
||||
} else {
|
||||
newImageIds.push(imageId);
|
||||
}
|
||||
});
|
||||
return newImageIds;
|
||||
}
|
||||
|
||||
export { convertMultiframeImageIds, prefetchMetadataInformation };
|
||||
|
|
@ -1,101 +0,0 @@
|
|||
import { api } from 'dicomweb-client';
|
||||
import dcmjs from 'dcmjs';
|
||||
import { utilities } from '@cornerstonejs/core';
|
||||
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
|
||||
import getPixelSpacingInformation from './getPixelSpacingInformation';
|
||||
import { convertMultiframeImageIds } from './convertMultiframeImageIds';
|
||||
import removeInvalidTags from './removeInvalidTags';
|
||||
|
||||
const { DicomMetaDictionary } = dcmjs.data;
|
||||
const { calibratedPixelSpacingMetadataProvider } = utilities;
|
||||
|
||||
/**
|
||||
/**
|
||||
* Uses dicomweb-client to fetch metadata of a study, cache it in cornerstone,
|
||||
* and return a list of imageIds for the frames.
|
||||
*
|
||||
* Uses the app config to choose which study to fetch, and which
|
||||
* dicom-web server to fetch it from.
|
||||
*
|
||||
* @returns {string[]} An array of imageIds for instances in the study.
|
||||
*/
|
||||
|
||||
export default async function createImageIdsAndCacheMetaData({
|
||||
StudyInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
SOPInstanceUID = null,
|
||||
wadoRsRoot,
|
||||
client = null,
|
||||
}) {
|
||||
const SOP_INSTANCE_UID = '00080018';
|
||||
const SERIES_INSTANCE_UID = '0020000E';
|
||||
const MODALITY = '00080060';
|
||||
|
||||
const studySearchOptions = {
|
||||
studyInstanceUID: StudyInstanceUID,
|
||||
seriesInstanceUID: SeriesInstanceUID,
|
||||
};
|
||||
|
||||
client = client || new api.DICOMwebClient({ url: wadoRsRoot });
|
||||
let instances = await client.retrieveSeriesMetadata(studySearchOptions);
|
||||
|
||||
// if sop instance is provided we should filter the instances to only include the one we want
|
||||
if (SOPInstanceUID) {
|
||||
instances = instances.filter((instance) => {
|
||||
return instance[SOP_INSTANCE_UID].Value[0] === SOPInstanceUID;
|
||||
});
|
||||
}
|
||||
|
||||
const modality = instances[0][MODALITY].Value[0];
|
||||
let imageIds = instances.map((instanceMetaData) => {
|
||||
const SeriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0];
|
||||
const SOPInstanceUIDToUse =
|
||||
SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0];
|
||||
|
||||
const prefix = 'wadors:';
|
||||
|
||||
const imageId =
|
||||
prefix +
|
||||
wadoRsRoot +
|
||||
'/studies/' +
|
||||
StudyInstanceUID +
|
||||
'/series/' +
|
||||
SeriesInstanceUID +
|
||||
'/instances/' +
|
||||
SOPInstanceUIDToUse +
|
||||
'/frames/1';
|
||||
|
||||
cornerstoneDICOMImageLoader.wadors.metaDataManager.add(
|
||||
imageId,
|
||||
instanceMetaData
|
||||
);
|
||||
return imageId;
|
||||
});
|
||||
|
||||
// if the image ids represent multiframe information, creates a new list with one image id per frame
|
||||
// if not multiframe data available, just returns the same list given
|
||||
imageIds = convertMultiframeImageIds(imageIds);
|
||||
|
||||
imageIds.forEach((imageId) => {
|
||||
let instanceMetaData =
|
||||
cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId);
|
||||
|
||||
// It was using JSON.parse(JSON.stringify(...)) before but it is 8x slower
|
||||
instanceMetaData = removeInvalidTags(instanceMetaData);
|
||||
|
||||
if (instanceMetaData) {
|
||||
// Add calibrated pixel spacing
|
||||
const metadata = DicomMetaDictionary.naturalizeDataset(instanceMetaData);
|
||||
const pixelSpacing = getPixelSpacingInformation(metadata);
|
||||
|
||||
if (pixelSpacing) {
|
||||
calibratedPixelSpacingMetadataProvider.add(imageId, {
|
||||
rowPixelSpacing: parseFloat(pixelSpacing[0]),
|
||||
columnPixelSpacing: parseFloat(pixelSpacing[1]),
|
||||
});
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
return imageIds;
|
||||
}
|
||||
|
|
@ -1,136 +0,0 @@
|
|||
// See https://github.com/OHIF/Viewers/blob/94a9067fe3d291d30e25a1bda5913511388edea2/platform/core/src/utils/metadataProvider/getPixelSpacingInformation.js
|
||||
|
||||
export default function getPixelSpacingInformation(instance) {
|
||||
// See http://gdcm.sourceforge.net/wiki/index.php/Imager_Pixel_Spacing
|
||||
|
||||
// TODO: Add Ultrasound region spacing
|
||||
// TODO: Add manual calibration
|
||||
|
||||
// TODO: Use ENUMS from dcmjs
|
||||
const projectionRadiographSOPClassUIDs = [
|
||||
'1.2.840.10008.5.1.4.1.1.1', // CR Image Storage
|
||||
'1.2.840.10008.5.1.4.1.1.1.1', // Digital X-Ray Image Storage – for Presentation
|
||||
'1.2.840.10008.5.1.4.1.1.1.1.1', // Digital X-Ray Image Storage – for Processing
|
||||
'1.2.840.10008.5.1.4.1.1.1.2', // Digital Mammography X-Ray Image Storage – for Presentation
|
||||
'1.2.840.10008.5.1.4.1.1.1.2.1', // Digital Mammography X-Ray Image Storage – for Processing
|
||||
'1.2.840.10008.5.1.4.1.1.1.3', // Digital Intra – oral X-Ray Image Storage – for Presentation
|
||||
'1.2.840.10008.5.1.4.1.1.1.3.1', // Digital Intra – oral X-Ray Image Storage – for Processing
|
||||
'1.2.840.10008.5.1.4.1.1.12.1', // X-Ray Angiographic Image Storage
|
||||
'1.2.840.10008.5.1.4.1.1.12.1.1', // Enhanced XA Image Storage
|
||||
'1.2.840.10008.5.1.4.1.1.12.2', // X-Ray Radiofluoroscopic Image Storage
|
||||
'1.2.840.10008.5.1.4.1.1.12.2.1', // Enhanced XRF Image Storage
|
||||
'1.2.840.10008.5.1.4.1.1.12.3', // X-Ray Angiographic Bi-plane Image Storage Retired
|
||||
];
|
||||
|
||||
const {
|
||||
PixelSpacing,
|
||||
ImagerPixelSpacing,
|
||||
SOPClassUID,
|
||||
PixelSpacingCalibrationType,
|
||||
PixelSpacingCalibrationDescription,
|
||||
EstimatedRadiographicMagnificationFactor,
|
||||
SequenceOfUltrasoundRegions,
|
||||
} = instance;
|
||||
|
||||
const isProjection = projectionRadiographSOPClassUIDs.includes(SOPClassUID);
|
||||
|
||||
const TYPES = {
|
||||
NOT_APPLICABLE: 'NOT_APPLICABLE',
|
||||
UNKNOWN: 'UNKNOWN',
|
||||
CALIBRATED: 'CALIBRATED',
|
||||
DETECTOR: 'DETECTOR',
|
||||
};
|
||||
|
||||
if (!isProjection) {
|
||||
return PixelSpacing;
|
||||
}
|
||||
|
||||
if (isProjection && !ImagerPixelSpacing) {
|
||||
// If only Pixel Spacing is present, and this is a projection radiograph,
|
||||
// PixelSpacing should be used, but the user should be informed that
|
||||
// what it means is unknown
|
||||
return {
|
||||
PixelSpacing,
|
||||
type: TYPES.UNKNOWN,
|
||||
isProjection,
|
||||
};
|
||||
} else if (
|
||||
PixelSpacing &&
|
||||
ImagerPixelSpacing &&
|
||||
PixelSpacing === ImagerPixelSpacing
|
||||
) {
|
||||
// If Imager Pixel Spacing and Pixel Spacing are present and they have the same values,
|
||||
// then the user should be informed that the measurements are at the detector plane
|
||||
return {
|
||||
PixelSpacing,
|
||||
type: TYPES.DETECTOR,
|
||||
isProjection,
|
||||
};
|
||||
} else if (
|
||||
PixelSpacing &&
|
||||
ImagerPixelSpacing &&
|
||||
PixelSpacing !== ImagerPixelSpacing
|
||||
) {
|
||||
// If Imager Pixel Spacing and Pixel Spacing are present and they have different values,
|
||||
// then the user should be informed that these are "calibrated"
|
||||
// (in some unknown manner if Pixel Spacing Calibration Type and/or
|
||||
// Pixel Spacing Calibration Description are absent)
|
||||
return {
|
||||
PixelSpacing,
|
||||
type: TYPES.CALIBRATED,
|
||||
isProjection,
|
||||
PixelSpacingCalibrationType,
|
||||
PixelSpacingCalibrationDescription,
|
||||
};
|
||||
} else if (!PixelSpacing && ImagerPixelSpacing) {
|
||||
let CorrectedImagerPixelSpacing = ImagerPixelSpacing;
|
||||
if (EstimatedRadiographicMagnificationFactor) {
|
||||
// Note that in IHE Mammo profile compliant displays, the value of Imager Pixel Spacing is required to be corrected by
|
||||
// Estimated Radiographic Magnification Factor and the user informed of that.
|
||||
// TODO: should this correction be done before all of this logic?
|
||||
CorrectedImagerPixelSpacing = ImagerPixelSpacing.map(
|
||||
(pixelSpacing) =>
|
||||
pixelSpacing / EstimatedRadiographicMagnificationFactor
|
||||
);
|
||||
} else {
|
||||
console.warn(
|
||||
'EstimatedRadiographicMagnificationFactor was not present. Unable to correct ImagerPixelSpacing.'
|
||||
);
|
||||
}
|
||||
|
||||
return {
|
||||
PixelSpacing: CorrectedImagerPixelSpacing,
|
||||
isProjection,
|
||||
};
|
||||
} else if (
|
||||
SequenceOfUltrasoundRegions &&
|
||||
typeof SequenceOfUltrasoundRegions === 'object'
|
||||
) {
|
||||
const { PhysicalDeltaX, PhysicalDeltaY } = SequenceOfUltrasoundRegions;
|
||||
const USPixelSpacing = [PhysicalDeltaX * 10, PhysicalDeltaY * 10];
|
||||
|
||||
return {
|
||||
PixelSpacing: USPixelSpacing,
|
||||
};
|
||||
} else if (
|
||||
SequenceOfUltrasoundRegions &&
|
||||
Array.isArray(SequenceOfUltrasoundRegions) &&
|
||||
SequenceOfUltrasoundRegions.length > 1
|
||||
) {
|
||||
console.warn(
|
||||
'Sequence of Ultrasound Regions > one entry. This is not yet implemented, all measurements will be shown in pixels.'
|
||||
);
|
||||
} else if (isProjection === false && !ImagerPixelSpacing) {
|
||||
// If only Pixel Spacing is present, and this is not a projection radiograph,
|
||||
// we can stop here
|
||||
return {
|
||||
PixelSpacing,
|
||||
type: TYPES.NOT_APPLICABLE,
|
||||
isProjection,
|
||||
};
|
||||
}
|
||||
|
||||
console.warn(
|
||||
'Unknown combination of PixelSpacing and ImagerPixelSpacing identified. Unable to determine spacing.'
|
||||
);
|
||||
}
|
||||
|
|
@ -1,41 +0,0 @@
|
|||
import dicomParser from 'dicom-parser';
|
||||
import * as cornerstone from '@cornerstonejs/core';
|
||||
import * as cornerstoneTools from '@cornerstonejs/tools';
|
||||
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
|
||||
|
||||
window.cornerstone = cornerstone;
|
||||
window.cornerstoneTools = cornerstoneTools;
|
||||
const { preferSizeOverAccuracy, useNorm16Texture } =
|
||||
cornerstone.getConfiguration().rendering;
|
||||
|
||||
export default function initCornerstoneDICOMImageLoader() {
|
||||
// TODO: 此处非常的蛇皮
|
||||
cornerstone.setUseSharedArrayBuffer(false)
|
||||
cornerstone.setConfiguration({
|
||||
detectGPUConfig: {
|
||||
benchmarksURL: "http://localhost:9000"
|
||||
}
|
||||
})
|
||||
cornerstoneDICOMImageLoader.external.cornerstone = cornerstone;
|
||||
cornerstoneDICOMImageLoader.external.dicomParser = dicomParser;
|
||||
cornerstoneDICOMImageLoader.configure({
|
||||
useWebWorkers: true,
|
||||
decodeConfig: {
|
||||
convertFloatPixelDataToInt: false,
|
||||
use16BitDataType: preferSizeOverAccuracy || useNorm16Texture,
|
||||
},
|
||||
});
|
||||
|
||||
const config = {
|
||||
maxWebWorkers: navigator.hardwareConcurrency ? Math.min(navigator.hardwareConcurrency, 7) : 1,
|
||||
startWebWorkersOnDemand: false,
|
||||
taskConfiguration: {
|
||||
decodeTask: {
|
||||
initializeCodecsOnStartup: false,
|
||||
strict: false,
|
||||
},
|
||||
},
|
||||
};
|
||||
|
||||
cornerstoneDICOMImageLoader.webWorkerManager.initialize(config);
|
||||
}
|
||||
|
|
@ -1,13 +0,0 @@
|
|||
import initProviders from './initProviders.js';
|
||||
import initCornerstoneDICOMImageLoader from './initCornerstoneDICOMImageLoader';
|
||||
import initVolumeLoader from './initVolumeLoader';
|
||||
import { init as csRenderInit } from '@cornerstonejs/core';
|
||||
import { init as csToolsInit } from '@cornerstonejs/tools';
|
||||
|
||||
export default async function initDemo() {
|
||||
initProviders();
|
||||
initCornerstoneDICOMImageLoader();
|
||||
initVolumeLoader();
|
||||
await csRenderInit();
|
||||
await csToolsInit();
|
||||
}
|
||||
|
|
@ -1,17 +0,0 @@
|
|||
import * as cornerstone from '@cornerstonejs/core';
|
||||
import ptScalingMetaDataProvider from './ptScalingMetaDataProvider';
|
||||
|
||||
const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities;
|
||||
|
||||
export default function initProviders() {
|
||||
cornerstone.metaData.addProvider(
|
||||
ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider),
|
||||
10000
|
||||
);
|
||||
cornerstone.metaData.addProvider(
|
||||
calibratedPixelSpacingMetadataProvider.get.bind(
|
||||
calibratedPixelSpacingMetadataProvider
|
||||
),
|
||||
11000
|
||||
);
|
||||
}
|
||||
|
|
@ -1,19 +0,0 @@
|
|||
import { volumeLoader } from '@cornerstonejs/core';
|
||||
import {
|
||||
cornerstoneStreamingImageVolumeLoader,
|
||||
cornerstoneStreamingDynamicImageVolumeLoader,
|
||||
} from '@cornerstonejs/streaming-image-volume-loader';
|
||||
|
||||
export default function initVolumeLoader() {
|
||||
volumeLoader.registerUnknownVolumeLoader(
|
||||
cornerstoneStreamingImageVolumeLoader
|
||||
);
|
||||
volumeLoader.registerVolumeLoader(
|
||||
'cornerstoneStreamingImageVolume',
|
||||
cornerstoneStreamingImageVolumeLoader
|
||||
);
|
||||
volumeLoader.registerVolumeLoader(
|
||||
'cornerstoneStreamingDynamicImageVolume',
|
||||
cornerstoneStreamingDynamicImageVolumeLoader
|
||||
);
|
||||
}
|
||||
|
|
@ -1,17 +0,0 @@
|
|||
import { utilities as csUtils } from '@cornerstonejs/core';
|
||||
|
||||
const scalingPerImageId = {};
|
||||
|
||||
function addInstance(imageId, scalingMetaData) {
|
||||
const imageURI = csUtils.imageIdToURI(imageId);
|
||||
scalingPerImageId[imageURI] = scalingMetaData;
|
||||
}
|
||||
|
||||
function get(type, imageId) {
|
||||
if (type === 'scalingModule') {
|
||||
const imageURI = csUtils.imageIdToURI(imageId);
|
||||
return scalingPerImageId[imageURI];
|
||||
}
|
||||
}
|
||||
|
||||
export default { addInstance, get };
|
||||
|
|
@ -1,33 +0,0 @@
|
|||
/**
|
||||
* Remove invalid tags from a metadata and return a new object.
|
||||
*
|
||||
* At this time it is only removing tags that has `null` or `undefined` values
|
||||
* which is our main goal because that breaks when `naturalizeDataset(...)` is
|
||||
* called.
|
||||
*
|
||||
* Validating the tag id using regex like /^[a-fA-F0-9]{8}$/ make it run
|
||||
* +50% slower and looping through all characteres (split+every+Set or simple
|
||||
* FOR+Set) double the time it takes to run. It is currently taking +12ms/1k
|
||||
* images on average which can change depending on the machine.
|
||||
*
|
||||
* @param srcMetadata - source metadata
|
||||
* @returns new metadata object without invalid tags
|
||||
*/
|
||||
function removeInvalidTags(srcMetadata) {
|
||||
// Object.create(null) make it ~9% faster
|
||||
const dstMetadata = Object.create(null);
|
||||
const tagIds = Object.keys(srcMetadata);
|
||||
let tagValue;
|
||||
|
||||
tagIds.forEach((tagId) => {
|
||||
tagValue = srcMetadata[tagId];
|
||||
|
||||
if (tagValue !== undefined && tagValue !== null) {
|
||||
dstMetadata[tagId] = tagValue;
|
||||
}
|
||||
});
|
||||
|
||||
return dstMetadata;
|
||||
}
|
||||
|
||||
export { removeInvalidTags as default, removeInvalidTags };
|
||||
|
|
@ -1,16 +0,0 @@
|
|||
const windowWidth = 400;
|
||||
const windowCenter = 40;
|
||||
|
||||
const lower = windowCenter - windowWidth / 2.0;
|
||||
const upper = windowCenter + windowWidth / 2.0;
|
||||
|
||||
const ctVoiRange = { lower, upper };
|
||||
|
||||
export default function setCtTransferFunctionForVolumeActor({ volumeActor }) {
|
||||
volumeActor
|
||||
.getProperty()
|
||||
.getRGBTransferFunction(0)
|
||||
.setMappingRange(lower, upper);
|
||||
}
|
||||
|
||||
export { ctVoiRange };
|
||||
|
|
@ -1,87 +0,0 @@
|
|||
import macro from "@kitware/vtk.js/macro";
|
||||
import Helper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
|
||||
|
||||
|
||||
const { convertItkToVtkImage } = Helper;
|
||||
|
||||
import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
|
||||
|
||||
function getArrayName(filename) {
|
||||
const idx = filename.lastIndexOf(".");
|
||||
const name = idx > -1 ? filename.substring(0, idx) : filename;
|
||||
return `Scalars ${name}`;
|
||||
}
|
||||
|
||||
// ----------------------------------------------------------------------------
|
||||
// vtkITKDicomImageReader methods
|
||||
// ----------------------------------------------------------------------------
|
||||
|
||||
function vtkITKDicomImageReader(publicAPI, model) {
|
||||
// Set our className
|
||||
model.classHierarchy.push("vtkITKDicomImageReader");
|
||||
|
||||
// Returns a promise to signal when image is ready
|
||||
publicAPI.readFileSeries = (files, fileName) => {
|
||||
if (!files || !files.length || files === model.files) {
|
||||
return Promise.resolve();
|
||||
}
|
||||
|
||||
if (fileName && fileName !== model.fileName) {
|
||||
model.fileName = fileName;
|
||||
}
|
||||
|
||||
model.files = files;
|
||||
|
||||
return readImageDICOMFileSeries(null, files)
|
||||
.then(({ webWorker, image }) => {
|
||||
webWorker.terminate();
|
||||
return image;
|
||||
})
|
||||
.then(itkImage => {
|
||||
const imageData = convertItkToVtkImage(itkImage, {
|
||||
scalarArrayName: model.arrayName || getArrayName(model.fileName)
|
||||
});
|
||||
model.output[0] = imageData;
|
||||
|
||||
publicAPI.modified();
|
||||
|
||||
return imageData;
|
||||
});
|
||||
};
|
||||
|
||||
publicAPI.requestData = (/* inData, outData */) => {
|
||||
publicAPI.readFileSeries(model.files, model.fileName);
|
||||
};
|
||||
}
|
||||
|
||||
// ----------------------------------------------------------------------------
|
||||
// Object factory
|
||||
// ----------------------------------------------------------------------------
|
||||
|
||||
const DEFAULT_VALUES = {
|
||||
fileName: "",
|
||||
// If null/undefined a unique array will be generated
|
||||
arrayName: null
|
||||
};
|
||||
|
||||
// ----------------------------------------------------------------------------
|
||||
|
||||
export function extend(publicAPI, model, initialValues = {}) {
|
||||
Object.assign(model, DEFAULT_VALUES, initialValues);
|
||||
|
||||
// Build VTK API
|
||||
macro.obj(publicAPI, model);
|
||||
macro.algo(publicAPI, model, 0, 1);
|
||||
macro.setGet(publicAPI, model, ["fileName", "arrayName"]);
|
||||
|
||||
// vtkITKDicomImageReader methods
|
||||
vtkITKDicomImageReader(publicAPI, model);
|
||||
}
|
||||
|
||||
// ----------------------------------------------------------------------------
|
||||
|
||||
export const newInstance = macro.newInstance(extend, "vtkITKDicomImageReader");
|
||||
|
||||
// ----------------------------------------------------------------------------
|
||||
|
||||
export default { newInstance, extend };
|
||||
|
|
@ -1,74 +0,0 @@
|
|||
import { useRef, useState } from "react";
|
||||
import dicomParser from "dicom-parser";
|
||||
import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
|
||||
import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
|
||||
import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
|
||||
|
||||
import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
|
||||
|
||||
// import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
|
||||
|
||||
import { readImageDicomFileSeries } from "@itk-wasm/dicom";
|
||||
// import { readImageDicomFileSeries } from 'itk-wasm'
|
||||
|
||||
// import { readImageDICOMFileSeries } from "itk-wasm";
|
||||
|
||||
interface LocalMprProps {
|
||||
children?: JSX.Element;
|
||||
}
|
||||
|
||||
export const LocalMpr = (props: LocalMprProps) => {
|
||||
const containerRef = useRef(null);
|
||||
const handleFolderUpload = async (
|
||||
event: React.ChangeEvent<HTMLInputElement>
|
||||
) => {
|
||||
if (event.target.files) {
|
||||
const files = event.target.files;
|
||||
if (!files.length) {
|
||||
return;
|
||||
}
|
||||
|
||||
const fileList: File[] = [];
|
||||
for (let i = 0; i < files.length; i++) {
|
||||
fileList.push(files[i]);
|
||||
}
|
||||
|
||||
const image = await readImageDicomFileSeries(null, {
|
||||
inputImages: fileList,
|
||||
});
|
||||
const vtkImage = vtkITKHelper.convertItkToVtkImage(image);
|
||||
const volume = vtkVolume.newInstance();
|
||||
const mapper = vtkVolumeMapper.newInstance();
|
||||
volume.setMapper(mapper);
|
||||
mapper.setInputData(vtkImage);
|
||||
|
||||
// 创建 vtk 的全屏渲染窗口
|
||||
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
|
||||
background: [0, 0, 0],
|
||||
container: containerRef.current!,
|
||||
});
|
||||
const renderer = fullScreenRenderer.getRenderer();
|
||||
const renderWindow = fullScreenRenderer.getRenderWindow();
|
||||
|
||||
// 将 volume 添加到渲染器
|
||||
renderer.addVolume(volume);
|
||||
// 设置相机位置等
|
||||
renderer.resetCamera();
|
||||
renderWindow.render();
|
||||
}
|
||||
};
|
||||
|
||||
return (
|
||||
<div>
|
||||
<div>
|
||||
<input
|
||||
type="file"
|
||||
webkitdirectory="true"
|
||||
directory=""
|
||||
onChange={handleFolderUpload}
|
||||
/>
|
||||
</div>
|
||||
<div style={{ width: 400, height: 400 }} ref={containerRef}></div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
|
@ -1,133 +0,0 @@
|
|||
import { relative } from "path";
|
||||
import React, { useEffect, useRef, useState } from "react";
|
||||
import * as THREE from "three";
|
||||
import { TrackballControls } from "three/examples/jsm/controls/TrackballControls";
|
||||
|
||||
type ThreeJSComponentProps = {
|
||||
// 你可以在这里添加任何需要的props
|
||||
};
|
||||
|
||||
export const MprViewer: React.FC<ThreeJSComponentProps> = () => {
|
||||
const mountRef = useRef<HTMLDivElement>(null);
|
||||
const [imageSrc, setImageSrc] = useState<string>("");
|
||||
|
||||
useEffect(() => {
|
||||
const width = window.innerWidth - 300;
|
||||
const height = window.innerHeight;
|
||||
const scene = new THREE.Scene();
|
||||
scene.background = new THREE.Color(0x808080);
|
||||
|
||||
const camera = new THREE.PerspectiveCamera(75, width / height, 0.1, 1000);
|
||||
const renderer = new THREE.WebGLRenderer({ antialias: true });
|
||||
renderer.setSize(width, height);
|
||||
|
||||
// 添加一个可移动和旋转的平面
|
||||
const planeGeometry = new THREE.PlaneGeometry(200, 200);
|
||||
const planeMaterial = new THREE.MeshBasicMaterial({
|
||||
color: 0xffff00,
|
||||
side: THREE.DoubleSide,
|
||||
});
|
||||
const plane = new THREE.Mesh(planeGeometry, planeMaterial);
|
||||
plane.position.set(0, 0, 0); // 初始位置
|
||||
scene.add(plane);
|
||||
|
||||
// 创建一个与平面对齐的剪裁平面
|
||||
const clipPlane = new THREE.Plane(new THREE.Vector3(0, 0, 1), 0);
|
||||
renderer.clippingPlanes = [clipPlane];
|
||||
|
||||
// 使剪裁平面跟随你的移动平面
|
||||
const updateClipPlane = () => {
|
||||
clipPlane.normal.copy(plane.position).normalize();
|
||||
};
|
||||
|
||||
// 添加多个3D物体
|
||||
const geometry1 = new THREE.BoxGeometry(100, 100, 100);
|
||||
const material1 = new THREE.MeshPhongMaterial({
|
||||
color: 0x00ff00,
|
||||
transparent: true,
|
||||
opacity: 0.5,
|
||||
});
|
||||
const cube = new THREE.Mesh(geometry1, material1);
|
||||
cube.position.x = -50; // 调整位置以确保重叠
|
||||
scene.add(cube);
|
||||
|
||||
const geometry2 = new THREE.SphereGeometry(50, 32, 32);
|
||||
const material2 = new THREE.MeshPhongMaterial({
|
||||
color: 0xff0000,
|
||||
transparent: true,
|
||||
opacity: 0.5,
|
||||
});
|
||||
const sphere = new THREE.Mesh(geometry2, material2);
|
||||
sphere.position.x = 0; // 调整位置以确保重叠
|
||||
scene.add(sphere);
|
||||
|
||||
const geometry3 = new THREE.ConeGeometry(50, 100, 32);
|
||||
const material3 = new THREE.MeshPhongMaterial({
|
||||
color: 0x0000ff,
|
||||
transparent: true,
|
||||
opacity: 0.5,
|
||||
});
|
||||
const cone = new THREE.Mesh(geometry3, material3);
|
||||
cone.position.x = 50; // 调整位置以确保重叠
|
||||
scene.add(cone);
|
||||
|
||||
camera.position.set(0, 0, 500);
|
||||
camera.lookAt(scene.position);
|
||||
|
||||
const ambientLight = new THREE.AmbientLight(0xffffff, 0.5);
|
||||
scene.add(ambientLight);
|
||||
|
||||
const mount = mountRef.current;
|
||||
if (mount) {
|
||||
mount.appendChild(renderer.domElement);
|
||||
}
|
||||
|
||||
const controls = new TrackballControls(camera, renderer.domElement);
|
||||
|
||||
const animate = () => {
|
||||
requestAnimationFrame(animate);
|
||||
controls.update(); // 只有在使用 TrackballControls 时才需要
|
||||
// camera.position.y += 5;
|
||||
camera.updateMatrixWorld();
|
||||
|
||||
updateClipPlane(); // 更新剪裁平面的位置和方向
|
||||
|
||||
|
||||
renderer.render(scene, camera);
|
||||
|
||||
// 从渲染器的 canvas 中获取图像
|
||||
const canvas = renderer.domElement;
|
||||
canvas.toBlob((blob) => {
|
||||
if (blob) {
|
||||
const imageUrl = URL.createObjectURL(blob);
|
||||
setImageSrc(imageUrl);
|
||||
}
|
||||
}, "image/jpeg");
|
||||
};
|
||||
|
||||
animate();
|
||||
|
||||
return () => {
|
||||
controls.dispose();
|
||||
mount?.removeChild(renderer.domElement);
|
||||
URL.revokeObjectURL(imageSrc);
|
||||
};
|
||||
}, []);
|
||||
|
||||
return (
|
||||
<div style={{ position: "relative" }}>
|
||||
<div ref={mountRef} />
|
||||
<img
|
||||
style={{
|
||||
position: "absolute",
|
||||
right: 0,
|
||||
top: 0,
|
||||
width: "200px",
|
||||
height: "200px",
|
||||
}}
|
||||
src={imageSrc}
|
||||
alt="Rendered Scene"
|
||||
/>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
|
@ -1,67 +0,0 @@
|
|||
import { useEffect, useRef } from "react";
|
||||
import { Enums, RenderingEngine, cache } from "@cornerstonejs/core";
|
||||
import { initCornerstone } from "../CornerstoneDicomLoader/init";
|
||||
import { createImageIdsAndCacheMetaData } from "../CornerstoneDicomLoader/createImageIdsAndCacheMetaData";
|
||||
import {
|
||||
IStackViewport,
|
||||
PublicViewportInput,
|
||||
} from "@cornerstonejs/core/dist/types/types";
|
||||
|
||||
interface StackViewerProps {
|
||||
children?: JSX.Element;
|
||||
}
|
||||
|
||||
const renderingEngineId = "myRenderingEngine";
|
||||
const viewportId = "CT_STACK";
|
||||
|
||||
const { ViewportType } = Enums;
|
||||
|
||||
const StudyInstanceUID =
|
||||
"1.2.840.113564.345049290535.9692.637552042156233117.433089";
|
||||
const SeriesInstanceUID =
|
||||
"1.3.12.2.1107.5.1.4.76315.30000021042706150001900118311";
|
||||
|
||||
export const StackViewer = (props: StackViewerProps) => {
|
||||
const dicomRef = useRef(null);
|
||||
|
||||
const run = async () => {
|
||||
await initCornerstone();
|
||||
// Get Cornerstone imageIds and fetch metadata into RAM
|
||||
const imageIds = await createImageIdsAndCacheMetaData({
|
||||
StudyInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
wadoRsRoot: "/dicom-web",
|
||||
});
|
||||
|
||||
const renderingEngine = new RenderingEngine(renderingEngineId);
|
||||
|
||||
const viewportInput = {
|
||||
viewportId,
|
||||
type: ViewportType.STACK,
|
||||
element: dicomRef.current,
|
||||
} as unknown as PublicViewportInput;
|
||||
|
||||
renderingEngine.enableElement(viewportInput);
|
||||
|
||||
const viewport = renderingEngine.getViewport(viewportId) as IStackViewport;
|
||||
|
||||
const stack = imageIds;
|
||||
|
||||
await viewport.setStack(stack);
|
||||
const currentImageIdIndex = viewport.getCurrentImageIdIndex();
|
||||
const numImages = viewport.getImageIds().length;
|
||||
let newImageIdIndex = currentImageIdIndex + 1;
|
||||
newImageIdIndex = Math.min(newImageIdIndex, numImages - 1);
|
||||
viewport.setImageIdIndex(newImageIdIndex);
|
||||
};
|
||||
|
||||
useEffect(() => {
|
||||
run();
|
||||
}, []);
|
||||
|
||||
return (
|
||||
<div>
|
||||
<div ref={dicomRef} style={{ width: 400, height: 400 }}></div>
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
|
@ -1,2 +0,0 @@
|
|||
declare module "@cornerstonejs/dicom-image-loader";
|
||||
declare module "dcmjs";
|
||||
|
|
@ -1,8 +1,4 @@
|
|||
import { CrosshairMpr } from "./Crosshair";
|
||||
import { DiffViewer } from "./DiffViewer";
|
||||
import { LocalMpr } from "./LocalMpr";
|
||||
import { MprViewer } from "./MprViewer";
|
||||
import { StackViewer } from "./StackViewer";
|
||||
|
||||
interface RootViewerProps {
|
||||
children?: JSX.Element;
|
||||
|
|
@ -11,9 +7,7 @@ interface RootViewerProps {
|
|||
export const RootViewer = (props: RootViewerProps) => {
|
||||
return (
|
||||
<div>
|
||||
<LocalMpr />
|
||||
{/* <CrosshairMpr /> */}
|
||||
{/* <StackViewer /> */}
|
||||
<DiffViewer />
|
||||
</div>
|
||||
);
|
||||
};
|
||||
|
|
|
|||
106
apps/aorta/src/modules/Root/Viewer/thickness/STLViewer.tsx
Normal file
106
apps/aorta/src/modules/Root/Viewer/thickness/STLViewer.tsx
Normal file
|
|
@ -0,0 +1,106 @@
|
|||
import React, { useEffect, useRef } from "react";
|
||||
import * as THREE from "three";
|
||||
import { STLLoader } from "three/examples/jsm/loaders/STLLoader";
|
||||
import { OrbitControls } from "three/examples/jsm/controls/OrbitControls";
|
||||
import {
|
||||
autoScale,
|
||||
createEnclosedGeometry,
|
||||
getOffsetTriangles,
|
||||
getTriangleVertexs,
|
||||
} from "./util";
|
||||
|
||||
export const STLViewer: React.FC = () => {
|
||||
const containerRef = useRef<HTMLDivElement>(null);
|
||||
|
||||
useEffect(() => {
|
||||
if (containerRef.current) {
|
||||
const width = containerRef.current.clientWidth;
|
||||
const height = containerRef.current.clientHeight;
|
||||
|
||||
// 创建场景、相机和渲染器
|
||||
const scene = new THREE.Scene();
|
||||
const camera = new THREE.PerspectiveCamera(75, width / height, 0.1, 1000);
|
||||
camera.position.z = 5;
|
||||
|
||||
const renderer = new THREE.WebGLRenderer({ antialias: true });
|
||||
renderer.setSize(width, height);
|
||||
containerRef.current.appendChild(renderer.domElement);
|
||||
|
||||
// 加载STL文件
|
||||
const loader = new STLLoader();
|
||||
loader.load("/1.stl", (geometry) => {
|
||||
const s = autoScale(geometry);
|
||||
// geometry.center();
|
||||
// const material = new THREE.MeshPhongMaterial({
|
||||
// color: "lightgrey", // 使用更亮的颜色
|
||||
// shininess: 100, // 增加亮度
|
||||
// specular: 0x222222, // 调整镜面高光的颜色
|
||||
// // side: THREE.DoubleSide,
|
||||
// // wireframe: true,
|
||||
// });
|
||||
// const mesh = new THREE.Mesh(geometry, material);
|
||||
// mesh.scale.set(scale, scale, scale);
|
||||
// scene.add(mesh);
|
||||
|
||||
// 输出三角形顶点信息
|
||||
const triangles = getTriangleVertexs(geometry);
|
||||
////////////////////////////////////////////////////////////////
|
||||
////////////////////////////////////////////////////////////////
|
||||
////////////////////////////////////////////////////////////////
|
||||
////////////////////////////////////////////////////////////////
|
||||
|
||||
const newTriangles = getOffsetTriangles(triangles, -2);
|
||||
|
||||
console.log("newTriangles", newTriangles);
|
||||
|
||||
// 使用上面定义的函数
|
||||
const enclosedGeometry = createEnclosedGeometry(
|
||||
triangles,
|
||||
newTriangles
|
||||
);
|
||||
|
||||
enclosedGeometry.center();
|
||||
|
||||
const material = new THREE.MeshBasicMaterial({
|
||||
color: "lightgrey",
|
||||
side: THREE.DoubleSide,
|
||||
});
|
||||
|
||||
const mesh = new THREE.Mesh(enclosedGeometry, material);
|
||||
mesh.scale.set(s, s, s);
|
||||
scene.add(mesh);
|
||||
|
||||
////////////////////////////////////////////////////////////////
|
||||
////////////////////////////////////////////////////////////////
|
||||
////////////////////////////////////////////////////////////////
|
||||
////////////////////////////////////////////////////////////////
|
||||
});
|
||||
|
||||
// 添加环境光源
|
||||
const ambientLight = new THREE.AmbientLight(0xffffff, 1); // 第二个参数为强度
|
||||
scene.add(ambientLight);
|
||||
|
||||
// 添加方向光源
|
||||
const directionalLight = new THREE.DirectionalLight(0xffffff, 2);
|
||||
directionalLight.position.set(1, 1, 1).normalize();
|
||||
scene.add(directionalLight);
|
||||
|
||||
// 添加XYZ轴
|
||||
const axesHelper = new THREE.AxesHelper(2);
|
||||
scene.add(axesHelper);
|
||||
|
||||
// 添加OrbitControls
|
||||
const controls = new OrbitControls(camera, renderer.domElement);
|
||||
|
||||
// 渲染函数
|
||||
const animate = () => {
|
||||
requestAnimationFrame(animate);
|
||||
renderer.render(scene, camera);
|
||||
};
|
||||
|
||||
animate();
|
||||
}
|
||||
}, []);
|
||||
|
||||
return <div ref={containerRef} style={{ width: "100vw", height: "100vh" }} />;
|
||||
};
|
||||
13
apps/aorta/src/modules/Root/Viewer/thickness/index.tsx
Normal file
13
apps/aorta/src/modules/Root/Viewer/thickness/index.tsx
Normal file
|
|
@ -0,0 +1,13 @@
|
|||
import { STLViewer } from "./STLViewer";
|
||||
|
||||
interface RootViewerProps {
|
||||
children?: JSX.Element;
|
||||
}
|
||||
|
||||
export const RootViewer = (props: RootViewerProps) => {
|
||||
return (
|
||||
<div>
|
||||
123
|
||||
</div>
|
||||
);
|
||||
};
|
||||
202
apps/aorta/src/modules/Root/Viewer/thickness/util.ts
Normal file
202
apps/aorta/src/modules/Root/Viewer/thickness/util.ts
Normal file
|
|
@ -0,0 +1,202 @@
|
|||
import * as THREE from "three";
|
||||
|
||||
export const autoScale = (geometry: THREE.BufferGeometry) => {
|
||||
// 计算模型的边界
|
||||
geometry.computeBoundingBox();
|
||||
// 获取模型的大小
|
||||
const modelSize = geometry.boundingBox!.getSize(new THREE.Vector3());
|
||||
const maxSize = Math.max(modelSize.x, modelSize.y, modelSize.z);
|
||||
// 根据模型的大小设置一个缩放因子
|
||||
const scaleFactor = 2 / maxSize; // 假设我们希望模型最大为2单位
|
||||
return scaleFactor;
|
||||
};
|
||||
|
||||
export const getTriangleVertexs = (
|
||||
geometry: THREE.BufferGeometry
|
||||
): THREE.Vector3[][] => {
|
||||
const positions = geometry.attributes.position;
|
||||
const triangles: THREE.Vector3[][] = [];
|
||||
|
||||
const getTriangleVertices = (
|
||||
index1: number,
|
||||
index2: number,
|
||||
index3: number
|
||||
) => [
|
||||
new THREE.Vector3(
|
||||
positions.getX(index1),
|
||||
positions.getY(index1),
|
||||
positions.getZ(index1)
|
||||
),
|
||||
new THREE.Vector3(
|
||||
positions.getX(index2),
|
||||
positions.getY(index2),
|
||||
positions.getZ(index2)
|
||||
),
|
||||
new THREE.Vector3(
|
||||
positions.getX(index3),
|
||||
positions.getY(index3),
|
||||
positions.getZ(index3)
|
||||
),
|
||||
];
|
||||
|
||||
if (geometry.index) {
|
||||
const indices = geometry.index.array;
|
||||
for (let i = 0; i < indices.length; i += 3) {
|
||||
triangles.push(
|
||||
getTriangleVertices(indices[i], indices[i + 1], indices[i + 2])
|
||||
);
|
||||
}
|
||||
} else {
|
||||
for (let i = 0; i < positions.count; i += 3) {
|
||||
triangles.push(getTriangleVertices(i, i + 1, i + 2));
|
||||
}
|
||||
}
|
||||
|
||||
return triangles;
|
||||
};
|
||||
|
||||
export const getOffsetTriangles = (
|
||||
triangles: THREE.Vector3[][],
|
||||
offset: number
|
||||
): THREE.Vector3[][] => {
|
||||
const newTriangles: THREE.Vector3[][] = [];
|
||||
|
||||
triangles.forEach((triangle) => {
|
||||
// 计算三角形的法线
|
||||
const normal = new THREE.Vector3();
|
||||
const edge1 = new THREE.Vector3().subVectors(triangle[1], triangle[0]);
|
||||
const edge2 = new THREE.Vector3().subVectors(triangle[2], triangle[0]);
|
||||
normal.crossVectors(edge1, edge2).normalize();
|
||||
|
||||
// 使用法线和偏移量计算新的三角形顶点
|
||||
const offsetNormal = normal.clone().multiplyScalar(offset);
|
||||
const newTriangle = triangle.map((vertex) =>
|
||||
vertex.clone().sub(offsetNormal)
|
||||
);
|
||||
newTriangles.push(newTriangle);
|
||||
});
|
||||
|
||||
return newTriangles;
|
||||
};
|
||||
|
||||
export const createEnclosedGeometry = (
|
||||
triangles: THREE.Vector3[][],
|
||||
newTriangles: THREE.Vector3[][]
|
||||
): THREE.BufferGeometry => {
|
||||
const geometry = new THREE.BufferGeometry();
|
||||
const vertices: THREE.Vector3[] = [];
|
||||
const indices: number[] = [];
|
||||
|
||||
const processedEdges: Set<string> = new Set();
|
||||
|
||||
function edgeId(v1: THREE.Vector3, v2: THREE.Vector3): string {
|
||||
return `${v1.x},${v1.y},${v1.z}->${v2.x},${v2.y},${v2.z}`;
|
||||
}
|
||||
|
||||
triangles.forEach((triangle, index) => {
|
||||
const innerTriangle = newTriangles[index];
|
||||
|
||||
triangle.forEach((vertex) => {
|
||||
vertices.push(vertex);
|
||||
});
|
||||
|
||||
innerTriangle.forEach((vertex) => {
|
||||
vertices.push(vertex);
|
||||
});
|
||||
|
||||
// Process the three edges for each triangle
|
||||
for (let i = 0; i < 3; i++) {
|
||||
const next = (i + 1) % 3;
|
||||
const edge = edgeId(triangle[i], triangle[next]);
|
||||
|
||||
if (!processedEdges.has(edge)) {
|
||||
processedEdges.add(edge);
|
||||
|
||||
// Add the vertices for the quad (two triangles)
|
||||
const quadVertices = [
|
||||
triangle[i],
|
||||
triangle[next],
|
||||
innerTriangle[i],
|
||||
innerTriangle[next],
|
||||
];
|
||||
|
||||
quadVertices.forEach((vertex) => {
|
||||
vertices.push(vertex);
|
||||
});
|
||||
|
||||
const baseIndex = vertices.length - 4;
|
||||
|
||||
// First triangle of the quad
|
||||
indices.push(baseIndex, baseIndex + 2, baseIndex + 1);
|
||||
// Second triangle of the quad
|
||||
indices.push(baseIndex + 1, baseIndex + 2, baseIndex + 3);
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
geometry.setFromPoints(vertices);
|
||||
geometry.setIndex(indices);
|
||||
|
||||
return geometry;
|
||||
};
|
||||
|
||||
// export const createEnclosedGeometry = (
|
||||
// triangles: THREE.Vector3[][],
|
||||
// newTriangles: THREE.Vector3[][]
|
||||
// ): THREE.BufferGeometry => {
|
||||
// const geometry = new THREE.BufferGeometry();
|
||||
|
||||
// const vertices: number[] = [];
|
||||
// const indices: number[] = [];
|
||||
|
||||
// // 添加原始三角形和新三角形的顶点到vertices数组
|
||||
// triangles.forEach((triangle) => {
|
||||
// triangle.forEach((v) => {
|
||||
// vertices.push(v.x, v.y, v.z);
|
||||
// });
|
||||
// });
|
||||
|
||||
// newTriangles.forEach((triangle) => {
|
||||
// triangle.forEach((v) => {
|
||||
// vertices.push(v.x, v.y, v.z);
|
||||
// });
|
||||
// });
|
||||
|
||||
// const totalTriangles = triangles.length;
|
||||
|
||||
// // 创建索引来连接triangles和newTriangles中的三角形
|
||||
// for (let i = 0; i < totalTriangles; i++) {
|
||||
// const offset = totalTriangles * 3; // newTriangles在vertices中的偏移量
|
||||
|
||||
// const a1 = i * 3;
|
||||
// const b1 = a1 + 1;
|
||||
// const c1 = a1 + 2;
|
||||
|
||||
// const a2 = offset + i * 3;
|
||||
// const b2 = a2 + 1;
|
||||
// const c2 = a2 + 2;
|
||||
|
||||
// // 添加原始和新三角形的索引
|
||||
// indices.push(a1, b1, c1);
|
||||
// indices.push(a2, c2, b2);
|
||||
|
||||
// // 为每一对相邻的三角形添加边的索引
|
||||
// indices.push(a1, b1, a2);
|
||||
// indices.push(b1, b2, a2);
|
||||
|
||||
// indices.push(b1, c1, b2);
|
||||
// indices.push(c1, c2, b2);
|
||||
|
||||
// indices.push(c1, a1, c2);
|
||||
// indices.push(a1, a2, c2);
|
||||
// }
|
||||
|
||||
// geometry.setIndex(indices);
|
||||
// geometry.setAttribute(
|
||||
// "position",
|
||||
// new THREE.Float32BufferAttribute(vertices, 3)
|
||||
// );
|
||||
// geometry.computeVertexNormals(); // 计算顶点法线
|
||||
|
||||
// return geometry;
|
||||
// };
|
||||
|
|
@ -17,10 +17,6 @@ export const baseRoutes: (RouteObject & ExpandRouteProps)[] = [
|
|||
element: <Login />,
|
||||
title: "登录 - CVPILOT Viewer",
|
||||
},
|
||||
{
|
||||
path: "root/report/full",
|
||||
element: <ReportFullVersion />,
|
||||
},
|
||||
];
|
||||
|
||||
export const commonRoutes: (RouteObject & ExpandRouteProps)[] = [
|
||||
|
|
@ -45,7 +41,10 @@ export const commonRoutes: (RouteObject & ExpandRouteProps)[] = [
|
|||
path: "root/viewer",
|
||||
element: <RootViewer />,
|
||||
},
|
||||
|
||||
{
|
||||
path: "root/report/full",
|
||||
element: <ReportFullVersion />,
|
||||
},
|
||||
{
|
||||
path: "peripheral/viewer",
|
||||
element: <PeripheralViewer />,
|
||||
|
|
|
|||
|
|
@ -1,18 +0,0 @@
|
|||
module.exports = {
|
||||
root: true,
|
||||
env: { browser: true, es2020: true },
|
||||
extends: [
|
||||
'eslint:recommended',
|
||||
'plugin:@typescript-eslint/recommended',
|
||||
'plugin:react-hooks/recommended',
|
||||
],
|
||||
ignorePatterns: ['dist', '.eslintrc.cjs'],
|
||||
parser: '@typescript-eslint/parser',
|
||||
plugins: ['react-refresh'],
|
||||
rules: {
|
||||
'react-refresh/only-export-components': [
|
||||
'warn',
|
||||
{ allowConstantExport: true },
|
||||
],
|
||||
},
|
||||
}
|
||||
24
apps/phoenix/.gitignore
vendored
24
apps/phoenix/.gitignore
vendored
|
|
@ -1,24 +0,0 @@
|
|||
# Logs
|
||||
logs
|
||||
*.log
|
||||
npm-debug.log*
|
||||
yarn-debug.log*
|
||||
yarn-error.log*
|
||||
pnpm-debug.log*
|
||||
lerna-debug.log*
|
||||
|
||||
node_modules
|
||||
dist
|
||||
dist-ssr
|
||||
*.local
|
||||
|
||||
# Editor directories and files
|
||||
.vscode/*
|
||||
!.vscode/extensions.json
|
||||
.idea
|
||||
.DS_Store
|
||||
*.suo
|
||||
*.ntvs*
|
||||
*.njsproj
|
||||
*.sln
|
||||
*.sw?
|
||||
|
|
@ -1,30 +0,0 @@
|
|||
# React + TypeScript + Vite
|
||||
|
||||
This template provides a minimal setup to get React working in Vite with HMR and some ESLint rules.
|
||||
|
||||
Currently, two official plugins are available:
|
||||
|
||||
- [@vitejs/plugin-react](https://github.com/vitejs/vite-plugin-react/blob/main/packages/plugin-react/README.md) uses [Babel](https://babeljs.io/) for Fast Refresh
|
||||
- [@vitejs/plugin-react-swc](https://github.com/vitejs/vite-plugin-react-swc) uses [SWC](https://swc.rs/) for Fast Refresh
|
||||
|
||||
## Expanding the ESLint configuration
|
||||
|
||||
If you are developing a production application, we recommend updating the configuration to enable type aware lint rules:
|
||||
|
||||
- Configure the top-level `parserOptions` property like this:
|
||||
|
||||
```js
|
||||
export default {
|
||||
// other rules...
|
||||
parserOptions: {
|
||||
ecmaVersion: 'latest',
|
||||
sourceType: 'module',
|
||||
project: ['./tsconfig.json', './tsconfig.node.json'],
|
||||
tsconfigRootDir: __dirname,
|
||||
},
|
||||
}
|
||||
```
|
||||
|
||||
- Replace `plugin:@typescript-eslint/recommended` to `plugin:@typescript-eslint/recommended-type-checked` or `plugin:@typescript-eslint/strict-type-checked`
|
||||
- Optionally add `plugin:@typescript-eslint/stylistic-type-checked`
|
||||
- Install [eslint-plugin-react](https://github.com/jsx-eslint/eslint-plugin-react) and add `plugin:react/recommended` & `plugin:react/jsx-runtime` to the `extends` list
|
||||
|
|
@ -1,13 +0,0 @@
|
|||
<!doctype html>
|
||||
<html lang="en">
|
||||
<head>
|
||||
<meta charset="UTF-8" />
|
||||
<link rel="icon" type="image/svg+xml" href="/vite.svg" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
|
||||
<title>Vite + React + TS</title>
|
||||
</head>
|
||||
<body>
|
||||
<div id="root"></div>
|
||||
<script type="module" src="/src/main.tsx"></script>
|
||||
</body>
|
||||
</html>
|
||||
|
|
@ -1,33 +0,0 @@
|
|||
{
|
||||
"name": "@tavi/phoenix",
|
||||
"private": true,
|
||||
"version": "0.0.0",
|
||||
"type": "module",
|
||||
"scripts": {
|
||||
"dev": "vite",
|
||||
"build": "tsc && vite build",
|
||||
"lint": "eslint . --ext ts,tsx --report-unused-disable-directives --max-warnings 0",
|
||||
"preview": "vite preview"
|
||||
},
|
||||
"dependencies": {
|
||||
"react": "^18.2.0",
|
||||
"react-dom": "^18.2.0",
|
||||
"@kitware/vtk.js": "29.3.0",
|
||||
"@itk-wasm/image-io": "0.5.2",
|
||||
"@itk-wasm/mesh-io": "0.2.2",
|
||||
"@itk-wasm/dicom": "5.0.2"
|
||||
},
|
||||
"devDependencies": {
|
||||
"@types/react": "^18.2.43",
|
||||
"@types/react-dom": "^18.2.17",
|
||||
"@typescript-eslint/eslint-plugin": "^6.14.0",
|
||||
"@typescript-eslint/parser": "^6.14.0",
|
||||
"@vitejs/plugin-react": "^4.2.1",
|
||||
"eslint": "^8.55.0",
|
||||
"eslint-plugin-react-hooks": "^4.6.0",
|
||||
"eslint-plugin-react-refresh": "^0.4.5",
|
||||
"typescript": "^5.2.2",
|
||||
"vite": "^5.0.8",
|
||||
"vite-plugin-static-copy": "1.0.0"
|
||||
}
|
||||
}
|
||||
|
|
@ -1 +0,0 @@
|
|||
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="31.88" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 257"><defs><linearGradient id="IconifyId1813088fe1fbc01fb466" x1="-.828%" x2="57.636%" y1="7.652%" y2="78.411%"><stop offset="0%" stop-color="#41D1FF"></stop><stop offset="100%" stop-color="#BD34FE"></stop></linearGradient><linearGradient id="IconifyId1813088fe1fbc01fb467" x1="43.376%" x2="50.316%" y1="2.242%" y2="89.03%"><stop offset="0%" stop-color="#FFEA83"></stop><stop offset="8.333%" stop-color="#FFDD35"></stop><stop offset="100%" stop-color="#FFA800"></stop></linearGradient></defs><path fill="url(#IconifyId1813088fe1fbc01fb466)" d="M255.153 37.938L134.897 252.976c-2.483 4.44-8.862 4.466-11.382.048L.875 37.958c-2.746-4.814 1.371-10.646 6.827-9.67l120.385 21.517a6.537 6.537 0 0 0 2.322-.004l117.867-21.483c5.438-.991 9.574 4.796 6.877 9.62Z"></path><path fill="url(#IconifyId1813088fe1fbc01fb467)" d="M185.432.063L96.44 17.501a3.268 3.268 0 0 0-2.634 3.014l-5.474 92.456a3.268 3.268 0 0 0 3.997 3.378l24.777-5.718c2.318-.535 4.413 1.507 3.936 3.838l-7.361 36.047c-.495 2.426 1.782 4.5 4.151 3.78l15.304-4.649c2.372-.72 4.652 1.36 4.15 3.788l-11.698 56.621c-.732 3.542 3.979 5.473 5.943 2.437l1.313-2.028l72.516-144.72c1.215-2.423-.88-5.186-3.54-4.672l-25.505 4.922c-2.396.462-4.435-1.77-3.759-4.114l16.646-57.705c.677-2.35-1.37-4.583-3.769-4.113Z"></path></svg>
|
||||
|
Before Width: | Height: | Size: 1.5 KiB |
|
|
@ -1,128 +0,0 @@
|
|||
import { useEffect, useRef, useState } from "react";
|
||||
import { readImageDicomFileSeries } from "@itk-wasm/dicom";
|
||||
import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
|
||||
import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
|
||||
import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
|
||||
import "@kitware/vtk.js/Rendering/Profiles/Volume";
|
||||
import vtkRenderer from "@kitware/vtk.js/Rendering/Core/Renderer";
|
||||
import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
|
||||
import vtkRenderWindow from "@kitware/vtk.js/Rendering/Core/RenderWindow";
|
||||
|
||||
import "./app.css";
|
||||
import {
|
||||
checkExistenceInIndexedDB,
|
||||
loadImageFromIndexedDB,
|
||||
saveImageToIndexedDB,
|
||||
} from "./util";
|
||||
import { extractAxialSliceAsImage } from "./extract";
|
||||
|
||||
function App() {
|
||||
const [files, setFiles] = useState<File[]>([]);
|
||||
const inputRef = useRef<HTMLInputElement>(null);
|
||||
|
||||
const axialRef = useRef<HTMLElement | null>(null);
|
||||
const sagittalRef = useRef<HTMLElement | null>(null);
|
||||
const coronalRef = useRef<HTMLElement | null>(null);
|
||||
|
||||
const rendererRef = useRef<vtkRenderer>();
|
||||
const mapperRef = useRef<vtkVolumeMapper>();
|
||||
const actorRef = useRef<vtkVolume>();
|
||||
const renderWindowRef = useRef<vtkRenderWindow>();
|
||||
|
||||
const [image, setImage] = useState();
|
||||
|
||||
useEffect(() => {
|
||||
if (inputRef.current) inputRef.current.webkitdirectory = true;
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
checkExistenceInIndexedDB("outputImageKey").then((exist) => {
|
||||
if (exist) {
|
||||
console.time("start load from cache");
|
||||
loadImageFromIndexedDB().then((outputImage) => {
|
||||
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
|
||||
container: axialRef.current,
|
||||
});
|
||||
rendererRef.current = fullScreenRenderer.getRenderer();
|
||||
renderWindowRef.current = fullScreenRenderer.getRenderWindow();
|
||||
actorRef.current = vtkVolume.newInstance();
|
||||
mapperRef.current = vtkVolumeMapper.newInstance({
|
||||
sampleDistance: 1.1,
|
||||
});
|
||||
const vtkImage = vtkITKHelper.convertItkToVtkImage(outputImage);
|
||||
mapperRef.current?.setInputData(vtkImage);
|
||||
mapperRef.current && actorRef.current?.setMapper(mapperRef.current);
|
||||
actorRef.current && rendererRef.current?.addVolume(actorRef.current);
|
||||
rendererRef.current?.resetCamera();
|
||||
renderWindowRef.current?.render();
|
||||
console.timeEnd("start load from cache");
|
||||
|
||||
const imgSource = extractAxialSliceAsImage(vtkImage, 1);
|
||||
setImage(imgSource);
|
||||
});
|
||||
}
|
||||
});
|
||||
}, []);
|
||||
|
||||
useEffect(() => {
|
||||
if (files.length > 0) {
|
||||
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
|
||||
container: axialRef.current,
|
||||
});
|
||||
rendererRef.current = fullScreenRenderer.getRenderer();
|
||||
renderWindowRef.current = fullScreenRenderer.getRenderWindow();
|
||||
actorRef.current = vtkVolume.newInstance();
|
||||
mapperRef.current = vtkVolumeMapper.newInstance({ sampleDistance: 1.1 });
|
||||
console.time("itk-wasm parse vtkVolumeImageData");
|
||||
readImageDicomFileSeries(null, {
|
||||
inputImages: files,
|
||||
}).then((image) => {
|
||||
const vtkImage = vtkITKHelper.convertItkToVtkImage(image.outputImage);
|
||||
console.timeEnd("itk-wasm parse vtkVolumeImageData");
|
||||
saveImageToIndexedDB(image.outputImage);
|
||||
mapperRef.current?.setInputData(vtkImage);
|
||||
mapperRef.current && actorRef.current?.setMapper(mapperRef.current);
|
||||
actorRef.current && rendererRef.current?.addVolume(actorRef.current);
|
||||
rendererRef.current?.resetCamera();
|
||||
renderWindowRef.current?.render();
|
||||
});
|
||||
|
||||
return () => {
|
||||
actorRef.current = undefined;
|
||||
mapperRef.current = undefined;
|
||||
rendererRef.current = undefined;
|
||||
renderWindowRef.current = undefined;
|
||||
};
|
||||
}
|
||||
}, [files]);
|
||||
|
||||
const handleFolderUpload = async (
|
||||
event: React.ChangeEvent<HTMLInputElement>
|
||||
) => {
|
||||
const target = event.target as HTMLInputElement;
|
||||
if (!target.files) return;
|
||||
const files = [...target.files].filter((file) =>
|
||||
file.name.endsWith(".dcm")
|
||||
);
|
||||
setFiles(files);
|
||||
};
|
||||
|
||||
return (
|
||||
<>
|
||||
<input
|
||||
type="file"
|
||||
onChange={handleFolderUpload}
|
||||
ref={inputRef}
|
||||
style={{ position: "fixed", zIndex: 100 }}
|
||||
/>
|
||||
<div className="mpr">
|
||||
<div ref={axialRef} style={{ width: 500, height: 500 }}></div>
|
||||
{/* <div ref={sagittalRef} style={{ width: 300, height: 300 }}></div>
|
||||
<div ref={coronalRef} style={{ width: 300, height: 300 }}></div> */}
|
||||
</div>
|
||||
<img src={image} style={{ width: 200, height: 200 }} />
|
||||
</>
|
||||
);
|
||||
}
|
||||
|
||||
export default App;
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
.mpr {
|
||||
position: fixed;
|
||||
top: 20px;
|
||||
left: 50%;
|
||||
transform: translateX(-50%);
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
}
|
||||
|
|
@ -1 +0,0 @@
|
|||
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="35.93" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 228"><path fill="#00D8FF" d="M210.483 73.824a171.49 171.49 0 0 0-8.24-2.597c.465-1.9.893-3.777 1.273-5.621c6.238-30.281 2.16-54.676-11.769-62.708c-13.355-7.7-35.196.329-57.254 19.526a171.23 171.23 0 0 0-6.375 5.848a155.866 155.866 0 0 0-4.241-3.917C100.759 3.829 77.587-4.822 63.673 3.233C50.33 10.957 46.379 33.89 51.995 62.588a170.974 170.974 0 0 0 1.892 8.48c-3.28.932-6.445 1.924-9.474 2.98C17.309 83.498 0 98.307 0 113.668c0 15.865 18.582 31.778 46.812 41.427a145.52 145.52 0 0 0 6.921 2.165a167.467 167.467 0 0 0-2.01 9.138c-5.354 28.2-1.173 50.591 12.134 58.266c13.744 7.926 36.812-.22 59.273-19.855a145.567 145.567 0 0 0 5.342-4.923a168.064 168.064 0 0 0 6.92 6.314c21.758 18.722 43.246 26.282 56.54 18.586c13.731-7.949 18.194-32.003 12.4-61.268a145.016 145.016 0 0 0-1.535-6.842c1.62-.48 3.21-.974 4.76-1.488c29.348-9.723 48.443-25.443 48.443-41.52c0-15.417-17.868-30.326-45.517-39.844Zm-6.365 70.984c-1.4.463-2.836.91-4.3 1.345c-3.24-10.257-7.612-21.163-12.963-32.432c5.106-11 9.31-21.767 12.459-31.957c2.619.758 5.16 1.557 7.61 2.4c23.69 8.156 38.14 20.213 38.14 29.504c0 9.896-15.606 22.743-40.946 31.14Zm-10.514 20.834c2.562 12.94 2.927 24.64 1.23 33.787c-1.524 8.219-4.59 13.698-8.382 15.893c-8.067 4.67-25.32-1.4-43.927-17.412a156.726 156.726 0 0 1-6.437-5.87c7.214-7.889 14.423-17.06 21.459-27.246c12.376-1.098 24.068-2.894 34.671-5.345a134.17 134.17 0 0 1 1.386 6.193ZM87.276 214.515c-7.882 2.783-14.16 2.863-17.955.675c-8.075-4.657-11.432-22.636-6.853-46.752a156.923 156.923 0 0 1 1.869-8.499c10.486 2.32 22.093 3.988 34.498 4.994c7.084 9.967 14.501 19.128 21.976 27.15a134.668 134.668 0 0 1-4.877 4.492c-9.933 8.682-19.886 14.842-28.658 17.94ZM50.35 144.747c-12.483-4.267-22.792-9.812-29.858-15.863c-6.35-5.437-9.555-10.836-9.555-15.216c0-9.322 13.897-21.212 37.076-29.293c2.813-.98 5.757-1.905 8.812-2.773c3.204 10.42 7.406 21.315 12.477 32.332c-5.137 11.18-9.399 22.249-12.634 32.792a134.718 134.718 0 0 1-6.318-1.979Zm12.378-84.26c-4.811-24.587-1.616-43.134 6.425-47.789c8.564-4.958 27.502 2.111 47.463 19.835a144.318 144.318 0 0 1 3.841 3.545c-7.438 7.987-14.787 17.08-21.808 26.988c-12.04 1.116-23.565 2.908-34.161 5.309a160.342 160.342 0 0 1-1.76-7.887Zm110.427 27.268a347.8 347.8 0 0 0-7.785-12.803c8.168 1.033 15.994 2.404 23.343 4.08c-2.206 7.072-4.956 14.465-8.193 22.045a381.151 381.151 0 0 0-7.365-13.322Zm-45.032-43.861c5.044 5.465 10.096 11.566 15.065 18.186a322.04 322.04 0 0 0-30.257-.006c4.974-6.559 10.069-12.652 15.192-18.18ZM82.802 87.83a323.167 323.167 0 0 0-7.227 13.238c-3.184-7.553-5.909-14.98-8.134-22.152c7.304-1.634 15.093-2.97 23.209-3.984a321.524 321.524 0 0 0-7.848 12.897Zm8.081 65.352c-8.385-.936-16.291-2.203-23.593-3.793c2.26-7.3 5.045-14.885 8.298-22.6a321.187 321.187 0 0 0 7.257 13.246c2.594 4.48 5.28 8.868 8.038 13.147Zm37.542 31.03c-5.184-5.592-10.354-11.779-15.403-18.433c4.902.192 9.899.29 14.978.29c5.218 0 10.376-.117 15.453-.343c-4.985 6.774-10.018 12.97-15.028 18.486Zm52.198-57.817c3.422 7.8 6.306 15.345 8.596 22.52c-7.422 1.694-15.436 3.058-23.88 4.071a382.417 382.417 0 0 0 7.859-13.026a347.403 347.403 0 0 0 7.425-13.565Zm-16.898 8.101a358.557 358.557 0 0 1-12.281 19.815a329.4 329.4 0 0 1-23.444.823c-7.967 0-15.716-.248-23.178-.732a310.202 310.202 0 0 1-12.513-19.846h.001a307.41 307.41 0 0 1-10.923-20.627a310.278 310.278 0 0 1 10.89-20.637l-.001.001a307.318 307.318 0 0 1 12.413-19.761c7.613-.576 15.42-.876 23.31-.876H128c7.926 0 15.743.303 23.354.883a329.357 329.357 0 0 1 12.335 19.695a358.489 358.489 0 0 1 11.036 20.54a329.472 329.472 0 0 1-11 20.722Zm22.56-122.124c8.572 4.944 11.906 24.881 6.52 51.026c-.344 1.668-.73 3.367-1.15 5.09c-10.622-2.452-22.155-4.275-34.23-5.408c-7.034-10.017-14.323-19.124-21.64-27.008a160.789 160.789 0 0 1 5.888-5.4c18.9-16.447 36.564-22.941 44.612-18.3ZM128 90.808c12.625 0 22.86 10.235 22.86 22.86s-10.235 22.86-22.86 22.86s-22.86-10.235-22.86-22.86s10.235-22.86 22.86-22.86Z"></path></svg>
|
||||
|
Before Width: | Height: | Size: 4.0 KiB |
|
|
@ -1,38 +0,0 @@
|
|||
import vtkImageData from "@kitware/vtk.js/Common/DataModel/ImageData";
|
||||
|
||||
export const extractAxialSliceAsImage = (
|
||||
volumeData: vtkImageData,
|
||||
sliceIndex: number
|
||||
): string => {
|
||||
const dimensions = volumeData.getDimensions();
|
||||
|
||||
if (sliceIndex < 0 || sliceIndex >= dimensions[2]) {
|
||||
throw new Error("Invalid slice index");
|
||||
}
|
||||
|
||||
const scalars = volumeData.getPointData().getScalars();
|
||||
const slice = scalars
|
||||
.getData()
|
||||
.slice(
|
||||
sliceIndex * dimensions[0] * dimensions[1],
|
||||
(sliceIndex + 1) * dimensions[0] * dimensions[1]
|
||||
);
|
||||
|
||||
const canvas = document.createElement("canvas");
|
||||
canvas.width = dimensions[0];
|
||||
canvas.height = dimensions[1];
|
||||
const context = canvas.getContext("2d")!;
|
||||
const imageDataObj = context.createImageData(dimensions[0], dimensions[1]);
|
||||
|
||||
for (let i = 0; i < slice.length; i++) {
|
||||
const value = slice[i];
|
||||
imageDataObj.data[i * 4] = value;
|
||||
imageDataObj.data[i * 4 + 1] = value;
|
||||
imageDataObj.data[i * 4 + 2] = value;
|
||||
imageDataObj.data[i * 4 + 3] = 255;
|
||||
}
|
||||
|
||||
context.putImageData(imageDataObj, 0, 0);
|
||||
|
||||
return canvas.toDataURL();
|
||||
};
|
||||
|
|
@ -1,5 +0,0 @@
|
|||
import React from "react";
|
||||
import ReactDOM from "react-dom/client";
|
||||
import App from "./App.tsx";
|
||||
|
||||
ReactDOM.createRoot(document.getElementById("root")!).render(<App />);
|
||||
|
|
@ -1,91 +0,0 @@
|
|||
const dbName = "myDatabase";
|
||||
const storeName = "images";
|
||||
|
||||
export const openDatabase = async (): Promise<IDBDatabase> => {
|
||||
return new Promise((resolve, reject) => {
|
||||
const request = indexedDB.open(dbName);
|
||||
|
||||
request.onupgradeneeded = (event: IDBVersionChangeEvent) => {
|
||||
const db = request.result;
|
||||
if (!db.objectStoreNames.contains(storeName)) {
|
||||
db.createObjectStore(storeName);
|
||||
}
|
||||
};
|
||||
|
||||
request.onerror = (event) => reject(request.error);
|
||||
request.onsuccess = (event) => resolve(request.result);
|
||||
});
|
||||
};
|
||||
|
||||
export const saveImageToIndexedDB = async (outputImage: any) => {
|
||||
try {
|
||||
const db = await openDatabase();
|
||||
|
||||
const transaction = db.transaction(storeName, "readwrite");
|
||||
const store = transaction.objectStore(storeName);
|
||||
|
||||
const request = store.put(outputImage, "outputImageKey");
|
||||
request.onerror = (event) =>
|
||||
console.error("Error saving to IndexedDB", request.error);
|
||||
request.onsuccess = (event) => console.log("Image saved to IndexedDB");
|
||||
} catch (error) {
|
||||
console.error("Error with IndexedDB operation", error);
|
||||
}
|
||||
};
|
||||
|
||||
export const loadImageFromIndexedDB = async (): Promise<any> => {
|
||||
try {
|
||||
const db = await openDatabase();
|
||||
|
||||
const transaction = db.transaction(storeName, "readonly");
|
||||
const store = transaction.objectStore(storeName);
|
||||
|
||||
const request = store.get("outputImageKey");
|
||||
return new Promise((resolve, reject) => {
|
||||
request.onerror = (event) => {
|
||||
console.error("Error fetching from IndexedDB", request.error);
|
||||
reject(request.error);
|
||||
};
|
||||
request.onsuccess = (event) => {
|
||||
if (request.result) {
|
||||
console.log("Image loaded from IndexedDB");
|
||||
resolve(request.result);
|
||||
} else {
|
||||
console.log("No data found in IndexedDB");
|
||||
resolve(null);
|
||||
}
|
||||
};
|
||||
});
|
||||
} catch (error) {
|
||||
console.error("Error with IndexedDB operation", error);
|
||||
throw error;
|
||||
}
|
||||
};
|
||||
|
||||
export const checkExistenceInIndexedDB = async (
|
||||
key: string
|
||||
): Promise<boolean> => {
|
||||
try {
|
||||
const dbName = "myDatabase";
|
||||
const storeName = "images";
|
||||
const db = await openDatabase();
|
||||
|
||||
const transaction = db.transaction(storeName, "readonly");
|
||||
const store = transaction.objectStore(storeName);
|
||||
|
||||
const request = store.get(key);
|
||||
|
||||
return new Promise((resolve, reject) => {
|
||||
request.onerror = (event) => {
|
||||
console.error("Error fetching from IndexedDB", request.error);
|
||||
reject(request.error);
|
||||
};
|
||||
request.onsuccess = (event) => {
|
||||
resolve(request.result !== undefined);
|
||||
};
|
||||
});
|
||||
} catch (error) {
|
||||
console.error("Error with IndexedDB operation", error);
|
||||
throw error;
|
||||
}
|
||||
};
|
||||
1
apps/phoenix/src/vite-env.d.ts
vendored
1
apps/phoenix/src/vite-env.d.ts
vendored
|
|
@ -1 +0,0 @@
|
|||
/// <reference types="vite/client" />
|
||||
|
|
@ -1,25 +0,0 @@
|
|||
{
|
||||
"compilerOptions": {
|
||||
"target": "ES2020",
|
||||
"useDefineForClassFields": true,
|
||||
"lib": ["ES2020", "DOM", "DOM.Iterable"],
|
||||
"module": "ESNext",
|
||||
"skipLibCheck": true,
|
||||
|
||||
/* Bundler mode */
|
||||
"moduleResolution": "bundler",
|
||||
"allowImportingTsExtensions": true,
|
||||
"resolveJsonModule": true,
|
||||
"isolatedModules": true,
|
||||
"noEmit": true,
|
||||
"jsx": "react-jsx",
|
||||
|
||||
/* Linting */
|
||||
"strict": true,
|
||||
"noUnusedLocals": true,
|
||||
"noUnusedParameters": true,
|
||||
"noFallthroughCasesInSwitch": true
|
||||
},
|
||||
"include": ["src"],
|
||||
"references": [{ "path": "./tsconfig.node.json" }]
|
||||
}
|
||||
|
|
@ -1,10 +0,0 @@
|
|||
{
|
||||
"compilerOptions": {
|
||||
"composite": true,
|
||||
"skipLibCheck": true,
|
||||
"module": "ESNext",
|
||||
"moduleResolution": "bundler",
|
||||
"allowSyntheticDefaultImports": true
|
||||
},
|
||||
"include": ["vite.config.ts"]
|
||||
}
|
||||
|
|
@ -1,25 +0,0 @@
|
|||
import { defineConfig } from "vite";
|
||||
import react from "@vitejs/plugin-react";
|
||||
import { viteStaticCopy } from "vite-plugin-static-copy";
|
||||
|
||||
// https://vitejs.dev/config/
|
||||
export default defineConfig({
|
||||
worker: {
|
||||
format: "es",
|
||||
},
|
||||
optimizeDeps: {
|
||||
exclude: ["itk-wasm", "@itk-wasm/image-io"],
|
||||
},
|
||||
plugins: [
|
||||
react(),
|
||||
viteStaticCopy({
|
||||
targets: [
|
||||
{ src: "../../../dist/pipelines/*", dest: "pipelines" },
|
||||
{
|
||||
src: "../../../node_modules/@itk-wasm/image-io/dist/pipelines/*.{js,wasm,wasm.zst}",
|
||||
dest: "pipelines",
|
||||
},
|
||||
],
|
||||
}),
|
||||
],
|
||||
});
|
||||
|
|
@ -27,11 +27,13 @@ import { ForbiddenExceptionFilter } from './filter/forbid.filter';
|
|||
ClientsModule.register([
|
||||
{
|
||||
name: 'Client',
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'],
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
},
|
||||
},
|
||||
]),
|
||||
|
|
|
|||
|
|
@ -21,11 +21,10 @@ export class AuthController {
|
|||
@Res({ passthrough: true }) res: Response,
|
||||
) {
|
||||
const { username, password, phoneNumber } = userLoginDto;
|
||||
//* Step1: 询问认证中心服务，用户是否合法
|
||||
// TODO: isEnabled、phoneNumber，用于后续验证
|
||||
const { isLegal, data, msg } = await firstValueFrom(
|
||||
this.client.send('cert.user.account', { username, password }),
|
||||
);
|
||||
//* Step2: 上报登录日志
|
||||
await firstValueFrom(
|
||||
this.client.send('logger.user.signIn', {
|
||||
platform: 'dmp',
|
||||
|
|
@ -36,11 +35,10 @@ export class AuthController {
|
|||
}),
|
||||
);
|
||||
if (isLegal) {
|
||||
//* Step3: 签发token
|
||||
// 签发token
|
||||
const { token } = await firstValueFrom(
|
||||
this.client.send('cert.token.create', { username }),
|
||||
);
|
||||
//* Step4: 询问认证中心token存在cookie中的key，统一个业务的token的key，以及过期时间
|
||||
const { tokenKeyInCookie, expires } = await firstValueFrom(
|
||||
this.client.send('cert.token.config', []),
|
||||
);
|
||||
|
|
|
|||
|
|
@ -8,11 +8,13 @@ import { ClientsModule, Transport } from '@nestjs/microservices';
|
|||
ClientsModule.register([
|
||||
{
|
||||
name: 'Client',
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'],
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
},
|
||||
},
|
||||
]),
|
||||
|
|
|
|||
|
|
@ -1,12 +1,12 @@
|
|||
import { Controller } from '@nestjs/common';
|
||||
import { EventPattern } from '@nestjs/microservices';
|
||||
import { EventPattern, MessagePattern } from '@nestjs/microservices';
|
||||
import { getFileExt } from './app.util';
|
||||
import { clientConfig } from './app.config';
|
||||
import { MinioOSS } from '@tavi/oss';
|
||||
|
||||
@Controller()
|
||||
export class AppController {
|
||||
@EventPattern('report-upload-image')
|
||||
@MessagePattern('report-upload-image')
|
||||
async uploadImageHandler({ buffer, originalName }) {
|
||||
const objectName = Date.now() + '.' + getFileExt(originalName);
|
||||
const { bucketName, ...config } = clientConfig;
|
||||
|
|
|
|||
|
|
@ -6,11 +6,14 @@ async function bootstrap() {
|
|||
const app = await NestFactory.createMicroservice<MicroserviceOptions>(
|
||||
AppModule,
|
||||
{
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'], // 可以指定链接到多个nats的消息队列
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
maxConnectionAttempts: 10,
|
||||
},
|
||||
},
|
||||
);
|
||||
|
|
|
|||
|
|
@ -1,4 +1,4 @@
|
|||
import { EventPattern } from '@nestjs/microservices';
|
||||
import { EventPattern, MessagePattern } from '@nestjs/microservices';
|
||||
import { RedisService } from './redis/redis.service';
|
||||
import { ConfigService } from '@nestjs/config';
|
||||
import { Controller } from '@nestjs/common';
|
||||
|
|
@ -16,7 +16,7 @@ export class AppController {
|
|||
* 给业务系统登录接口进行token签发,注入用户的角色信息
|
||||
* @description redis的EX、cookie的maxAge(ms)、jwt的expiresIn，三者保持一致
|
||||
*/
|
||||
@EventPattern('cert.token.create')
|
||||
@MessagePattern('cert.token.create')
|
||||
async createToken(payload) {
|
||||
const { username } = payload;
|
||||
const token = await this.jwtService.sign(payload);
|
||||
|
|
@ -28,7 +28,7 @@ export class AppController {
|
|||
* 检查token有效性 && 解token
|
||||
* @description 业务系统的guard对请求token进行拦截，校验每次请求token是否合法&是否在redis中
|
||||
*/
|
||||
@EventPattern('cert.token.decode')
|
||||
@MessagePattern('cert.token.decode')
|
||||
async decodeToken(
|
||||
token: string,
|
||||
): Promise<{ tokenValid: boolean; payload: unknown; error?: unknown }> {
|
||||
|
|
@ -47,7 +47,7 @@ export class AppController {
|
|||
* 获取token在cookie中存储的key
|
||||
* @description cookie的maxAge单位是毫秒，如果给cookie使用expires需要 x1000
|
||||
*/
|
||||
@EventPattern('cert.token.config')
|
||||
@MessagePattern('cert.token.config')
|
||||
async tokenConfig() {
|
||||
return {
|
||||
tokenResignIn: this.configService.get('TOKEN_RESIGN_IN'),
|
||||
|
|
@ -56,7 +56,7 @@ export class AppController {
|
|||
};
|
||||
}
|
||||
|
||||
@EventPattern('cert.token.deprecated')
|
||||
@MessagePattern('cert.token.deprecated')
|
||||
async removeToken(payload) {
|
||||
const { username } = payload;
|
||||
console.log('username', username);
|
||||
|
|
|
|||
|
|
@ -6,11 +6,14 @@ async function bootstrap() {
|
|||
const app = await NestFactory.createMicroservice<MicroserviceOptions>(
|
||||
AppModule,
|
||||
{
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'], // 可以指定链接到多个nats的消息队列
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
maxConnectionAttempts: 10,
|
||||
},
|
||||
},
|
||||
);
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
import { Controller } from '@nestjs/common';
|
||||
import { AppService } from './app.service';
|
||||
import { EventPattern } from '@nestjs/microservices';
|
||||
import { EventPattern, MessagePattern } from '@nestjs/microservices';
|
||||
import { RbacService } from './rbac/rbac.service';
|
||||
|
||||
@Controller()
|
||||
|
|
@ -10,59 +10,59 @@ export class AppController {
|
|||
private readonly rbacService: RbacService,
|
||||
) {}
|
||||
|
||||
@EventPattern('cert.authorize')
|
||||
@MessagePattern('cert.authorize')
|
||||
async authorize(payload) {
|
||||
console.log('获取user的token，进行payload权限的验证', payload);
|
||||
return false;
|
||||
}
|
||||
|
||||
@EventPattern('cert.init.role.admin')
|
||||
@MessagePattern('cert.init.role.admin')
|
||||
async initRole() {
|
||||
await this.rbacService.initSuperAdminRole();
|
||||
await this.rbacService.initSuperAdminAccount();
|
||||
}
|
||||
|
||||
@EventPattern('cert.create.role')
|
||||
@MessagePattern('cert.create.role')
|
||||
async createRole(payload) {
|
||||
return await this.rbacService.createRole(payload);
|
||||
}
|
||||
|
||||
@EventPattern('cert.remove.role')
|
||||
@MessagePattern('cert.remove.role')
|
||||
async removeRole(payload) {
|
||||
return await this.rbacService.removeRole(payload);
|
||||
}
|
||||
|
||||
@EventPattern('cert.find.role.all')
|
||||
@MessagePattern('cert.find.role.all')
|
||||
async findAllRole() {
|
||||
return await this.rbacService.findAllRole();
|
||||
}
|
||||
|
||||
@EventPattern('cert.init.permission.resource')
|
||||
@MessagePattern('cert.init.permission.resource')
|
||||
async initPermission(payload) {
|
||||
await this.rbacService.initPermission(payload);
|
||||
}
|
||||
|
||||
@EventPattern('cert.find.role.permission')
|
||||
@MessagePattern('cert.find.role.permission')
|
||||
async findRolePermission(payload) {
|
||||
return await this.rbacService.findRolePermission(payload);
|
||||
}
|
||||
|
||||
@EventPattern('cert.update.role.permissions')
|
||||
@MessagePattern('cert.update.role.permissions')
|
||||
async updateRolePermissions(payload) {
|
||||
return await this.rbacService.updateRolePermissions(payload);
|
||||
}
|
||||
|
||||
@EventPattern('cert.update.role')
|
||||
@MessagePattern('cert.update.role')
|
||||
async updateRole(payload) {
|
||||
return await this.rbacService.updateRole(payload);
|
||||
}
|
||||
|
||||
@EventPattern('cert.find.all.user')
|
||||
@MessagePattern('cert.find.all.user')
|
||||
async findAllUser() {
|
||||
return await this.rbacService.findAllUser();
|
||||
}
|
||||
|
||||
@EventPattern('cert.role.authorize')
|
||||
@MessagePattern('cert.role.authorize')
|
||||
async roleAuthorize({ user, url }) {
|
||||
const allow = await this.rbacService.roleAuthorize(user, url);
|
||||
return { allow };
|
||||
|
|
|
|||
|
|
@ -6,11 +6,14 @@ async function bootstrap() {
|
|||
const app = await NestFactory.createMicroservice<MicroserviceOptions>(
|
||||
AppModule,
|
||||
{
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'], // 可以指定链接到多个nats的消息队列
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
maxConnectionAttempts: 10,
|
||||
},
|
||||
},
|
||||
);
|
||||
|
|
|
|||
|
|
@ -1,5 +1,5 @@
|
|||
import { Controller } from '@nestjs/common';
|
||||
import { EventPattern } from '@nestjs/microservices';
|
||||
import { EventPattern, MessagePattern } from '@nestjs/microservices';
|
||||
import { UserService } from './user.service';
|
||||
import { BcryptService } from '../bcrypt/bcrypt.service';
|
||||
|
||||
|
|
@ -12,7 +12,7 @@ export class UserController {
|
|||
/**
|
||||
* 用户账号、密码、是否可用
|
||||
*/
|
||||
@EventPattern('cert.user.account')
|
||||
@MessagePattern('cert.user.account')
|
||||
async findUser(
|
||||
payload,
|
||||
): Promise<{ isLegal: boolean; msg?: string; data?: any }> {
|
||||
|
|
@ -28,22 +28,22 @@ export class UserController {
|
|||
return { isLegal: true, data: user };
|
||||
}
|
||||
|
||||
@EventPattern('cert.user.encrypt')
|
||||
@MessagePattern('cert.user.encrypt')
|
||||
async encrypt(plainText: string) {
|
||||
return await this.bcryptService.hashPassword(plainText);
|
||||
}
|
||||
|
||||
@EventPattern('cert.encrypt.compare')
|
||||
@MessagePattern('cert.encrypt.compare')
|
||||
async compare(plainText: string, hash: string) {
|
||||
return await this.bcryptService.comparePassword(plainText, hash);
|
||||
}
|
||||
|
||||
@EventPattern('cert.user.create')
|
||||
@MessagePattern('cert.user.create')
|
||||
async createUser(payload) {
|
||||
return await this.userService.create(payload);
|
||||
}
|
||||
|
||||
@EventPattern('cert.user.update')
|
||||
@MessagePattern('cert.user.update')
|
||||
async updateUser(payload) {
|
||||
const { password, ...rest } = payload;
|
||||
const updateFields = password
|
||||
|
|
@ -52,12 +52,12 @@ export class UserController {
|
|||
return await this.userService.update(updateFields);
|
||||
}
|
||||
|
||||
@EventPattern('cert.user.delete')
|
||||
@MessagePattern('cert.user.delete')
|
||||
async deleteUser(userIds: number[]) {
|
||||
return await this.userService.delete(userIds);
|
||||
}
|
||||
|
||||
@EventPattern('cert.user.find.annotator')
|
||||
@MessagePattern('cert.user.find.annotator')
|
||||
async findAnnotators() {
|
||||
const annotators = await this.userService.findAnnotators();
|
||||
return { data: annotators };
|
||||
|
|
|
|||
|
|
@ -8,11 +8,13 @@ import { ClientsModule, Transport } from '@nestjs/microservices';
|
|||
ClientsModule.register([
|
||||
{
|
||||
name: 'Client',
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'],
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
},
|
||||
},
|
||||
]),
|
||||
|
|
|
|||
|
|
@ -21,11 +21,14 @@ import { AdminModule } from './admin/admin.module';
|
|||
ClientsModule.register([
|
||||
{
|
||||
name: 'Client',
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'],
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
maxConnectionAttempts: 10,
|
||||
},
|
||||
},
|
||||
]),
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
import { Controller } from '@nestjs/common';
|
||||
import { AppService } from './app.service';
|
||||
import { EventPattern } from '@nestjs/microservices';
|
||||
import { EventPattern, MessagePattern } from '@nestjs/microservices';
|
||||
import { ConfigService } from '@nestjs/config';
|
||||
import axios from 'axios';
|
||||
|
||||
|
|
@ -75,7 +75,7 @@ export class AppController {
|
|||
private readonly configService: ConfigService,
|
||||
) {}
|
||||
|
||||
@EventPattern('dicom.find')
|
||||
@MessagePattern('dicom.find')
|
||||
async findDicoms() {
|
||||
const pacsUrl = this.configService.get('PACS_URL');
|
||||
try {
|
||||
|
|
@ -118,7 +118,7 @@ export class AppController {
|
|||
}
|
||||
}
|
||||
|
||||
@EventPattern('dicom.archive.url')
|
||||
@MessagePattern('dicom.archive.url')
|
||||
async archiveUrl({ ID, Type }: { ID: string; Type: string }) {
|
||||
const pacsUrl = this.configService.get('PACS_URL');
|
||||
const mapping = {
|
||||
|
|
|
|||
|
|
@ -6,11 +6,14 @@ async function bootstrap() {
|
|||
const app = await NestFactory.createMicroservice<MicroserviceOptions>(
|
||||
AppModule,
|
||||
{
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'], // 可以指定链接到多个nats的消息队列
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
maxConnectionAttempts: 10,
|
||||
},
|
||||
},
|
||||
);
|
||||
|
|
|
|||
|
|
@ -1,17 +1,17 @@
|
|||
import { Controller } from '@nestjs/common';
|
||||
import { AppService } from './app.service';
|
||||
import { EventPattern } from '@nestjs/microservices';
|
||||
import { EventPattern, MessagePattern } from '@nestjs/microservices';
|
||||
|
||||
@Controller()
|
||||
export class AppController {
|
||||
constructor(private readonly appService: AppService) {}
|
||||
|
||||
@EventPattern('archive.task.create')
|
||||
@MessagePattern('archive.task.create')
|
||||
async createArchiveTask(payload) {
|
||||
return await this.appService.createArchiveTask(payload);
|
||||
}
|
||||
|
||||
@EventPattern('archive.task.find')
|
||||
@MessagePattern('archive.task.find')
|
||||
async findArchiveTask(payload) {
|
||||
return await this.appService.findArchiveTask(payload);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -6,11 +6,14 @@ async function bootstrap() {
|
|||
const app = await NestFactory.createMicroservice<MicroserviceOptions>(
|
||||
AppModule,
|
||||
{
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'], // 可以指定链接到多个nats的消息队列
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
maxConnectionAttempts: 10,
|
||||
},
|
||||
},
|
||||
);
|
||||
|
|
|
|||
|
|
@ -7,11 +7,13 @@ import { ClientsModule, Transport } from '@nestjs/microservices';
|
|||
ClientsModule.register([
|
||||
{
|
||||
name: 'Client',
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'],
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
},
|
||||
},
|
||||
]),
|
||||
|
|
|
|||
|
|
@ -7,11 +7,13 @@ import { ClientsModule, Transport } from '@nestjs/microservices';
|
|||
ClientsModule.register([
|
||||
{
|
||||
name: 'Client',
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'],
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
},
|
||||
},
|
||||
]),
|
||||
|
|
|
|||
|
|
@ -21,11 +21,13 @@ import * as cookieParser from 'cookie-parser';
|
|||
ClientsModule.register([
|
||||
{
|
||||
name: 'Client',
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'],
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
},
|
||||
},
|
||||
]),
|
||||
|
|
|
|||
|
|
@ -15,11 +15,10 @@ export class AuthController {
|
|||
@Res({ passthrough: true }) res: Response,
|
||||
) {
|
||||
const { username, password } = userLoginDto;
|
||||
//* Step1: 询问认证中心服务，用户是否合法
|
||||
const { isLegal, data, msg } = await firstValueFrom(
|
||||
this.client.send('cert.user.account', { username, password }),
|
||||
);
|
||||
//* Step2: 上报登录日志
|
||||
// 日志
|
||||
await firstValueFrom(
|
||||
this.client.send('logger.user.signIn', {
|
||||
platform: 'dmp',
|
||||
|
|
@ -30,12 +29,11 @@ export class AuthController {
|
|||
}),
|
||||
);
|
||||
if (isLegal) {
|
||||
//* Step3: 签发token,签用户的角色,前端UI路由鉴权
|
||||
// 签发token,签用户的角色,前端UI路由鉴权
|
||||
const { roles } = data;
|
||||
const { token } = await firstValueFrom(
|
||||
this.client.send('cert.token.create', { username, roles }),
|
||||
);
|
||||
//* Step4: 询问认证中心token存在cookie中的key，统一个业务的token的key，以及过期时间
|
||||
const { tokenKeyInCookie, expires } = await firstValueFrom(
|
||||
this.client.send('cert.token.config', []),
|
||||
);
|
||||
|
|
|
|||
|
|
@ -7,11 +7,13 @@ import { ClientsModule, Transport } from '@nestjs/microservices';
|
|||
ClientsModule.register([
|
||||
{
|
||||
name: 'Client',
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'],
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
},
|
||||
},
|
||||
]),
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
import { Controller } from '@nestjs/common';
|
||||
import { AppService } from './app.service';
|
||||
import { EventPattern } from '@nestjs/microservices';
|
||||
import { EventPattern, MessagePattern } from '@nestjs/microservices';
|
||||
import * as dayjs from 'dayjs';
|
||||
import { SymmetricCrypto } from '@tavi/util';
|
||||
|
||||
|
|
@ -16,7 +16,7 @@ interface UserSignLoggerDto {
|
|||
export class AppController {
|
||||
constructor(private readonly appService: AppService) {}
|
||||
|
||||
@EventPattern('logger.user.signIn')
|
||||
@MessagePattern('logger.user.signIn')
|
||||
async userSignIn(payload: UserSignLoggerDto) {
|
||||
const dateTime = dayjs().format('YYYY-MM-DD HH:mm:ss');
|
||||
const { finger2, ...rest } = payload;
|
||||
|
|
@ -25,12 +25,12 @@ export class AppController {
|
|||
return 1;
|
||||
}
|
||||
|
||||
@EventPattern('logger.save')
|
||||
@MessagePattern('logger.save')
|
||||
async saveLogger(payload: UserSignLoggerDto) {
|
||||
return 'ok';
|
||||
}
|
||||
|
||||
@EventPattern('alg.test')
|
||||
@MessagePattern('alg.test')
|
||||
async algTest(payload) {
|
||||
console.log('来自: alg.test', payload);
|
||||
return payload;
|
||||
|
|
|
|||
|
|
@ -6,11 +6,14 @@ async function bootstrap() {
|
|||
const app = await NestFactory.createMicroservice<MicroserviceOptions>(
|
||||
AppModule,
|
||||
{
|
||||
transport: Transport.NATS,
|
||||
transport: Transport.RMQ,
|
||||
options: {
|
||||
servers: ['nats://localhost:4222'], // 可以指定链接到多个nats的消息队列
|
||||
maxReconnectAttempts: 5,
|
||||
reconnectTimeWait: 1000,
|
||||
urls: ['amqp://localhost:5672'],
|
||||
queue: 'cats_queue',
|
||||
queueOptions: {
|
||||
durable: false,
|
||||
},
|
||||
maxConnectionAttempts: 10,
|
||||
},
|
||||
},
|
||||
);
|
||||
|
|
|
|||
|
|
@ -14,7 +14,7 @@ async getHello(): Promise<any> {
|
|||
}
|
||||
|
||||
// 服务
|
||||
@EventPattern('sum')
|
||||
@MessagePattern('sum')
|
||||
sum(data: number[]): number {
|
||||
return (data || []).reduce((a, b) => a + b);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -4,43 +4,12 @@ services:
|
|||
image: nats
|
||||
container_name: tavi-nats
|
||||
restart: always
|
||||
command: -m 8222
|
||||
command: -m 5000
|
||||
ports:
|
||||
- "4222:4222"
|
||||
- "6222:6222"
|
||||
- "8222:8222"
|
||||
|
||||
nats_exporter:
|
||||
image: noenv/nats-exporter:latest
|
||||
command: -varz "http://nats:8222"
|
||||
ports:
|
||||
- "9999:7777"
|
||||
container_name: tavi-nats-exporter
|
||||
restart: always
|
||||
depends_on:
|
||||
- nats
|
||||
|
||||
prometheus:
|
||||
image: prom/prometheus:latest
|
||||
restart: always
|
||||
container_name: tavi-prometheus
|
||||
volumes:
|
||||
- ./Prometheus/prometheus.yml:/etc/prometheus/prometheus.yml
|
||||
command:
|
||||
- '--config.file=/etc/prometheus/prometheus.yml'
|
||||
ports:
|
||||
- "9090:9090"
|
||||
depends_on:
|
||||
- nats_exporter
|
||||
|
||||
grafana:
|
||||
image: grafana/grafana:latest
|
||||
container_name: tavi-grafana
|
||||
ports:
|
||||
- "9091:3000"
|
||||
depends_on:
|
||||
- prometheus
|
||||
|
||||
mongodb:
|
||||
image: mongo:5.0
|
||||
container_name: tavi-mongo
|
||||
|
|
@ -100,7 +69,7 @@ services:
|
|||
- POSTGRES_DB=postgres
|
||||
|
||||
pacs:
|
||||
image: osimis/orthanc:master-full
|
||||
image: osimis/orthanc:20.11.2
|
||||
container_name: tavi-orthanc
|
||||
depends_on:
|
||||
- postgres
|
||||
|
|
|
|||
|
|
@ -11,6 +11,13 @@ services:
|
|||
environment:
|
||||
- RABBITMQ_DEFAULT_USER=guest
|
||||
- RABBITMQ_DEFAULT_PASS=guest
|
||||
- TZ=Asia/Shanghai # 将此值设置为您所在的时区
|
||||
# volumes:
|
||||
# - rabbitmq-data:/var/lib/rabbitmq
|
||||
command: >
|
||||
bash -c "rabbitmq-plugins enable rabbitmq_management &&
|
||||
rabbitmq-plugins enable rabbitmq_tracing &&
|
||||
rabbitmq-server"
|
||||
|
||||
mongodb:
|
||||
image: mongo:5.0
|
||||
|
|
|
|||
|
|
@ -2,8 +2,8 @@
|
|||
"name": "@tavi-universe",
|
||||
"version": "1.0.0",
|
||||
"scripts": {
|
||||
"dev:all": "chmod 777 ./terminal.sh && ./terminal.sh",
|
||||
"mock": "pnpm run --filter @tavi/mock mock",
|
||||
"dev:phoenix": "pnpm run --filter @tavi/phoenix dev",
|
||||
"dev:dicom": "pnpm run --filter @tavi/dicom start:dev",
|
||||
"dev:logger": "pnpm run --filter @tavi/logger start:dev",
|
||||
"dev:dmp-web": "pnpm run --filter @tavi/dmp-web dev",
|
||||
|
|
|
|||
3494
pnpm-lock.yaml
3494
pnpm-lock.yaml
File diff suppressed because it is too large
Load Diff
Loading…
Reference in New Issue
Block a user