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50 changed files with 857 additions and 4426 deletions
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13
.vscode/tasks.json vendored
View File

@ -5,7 +5,6 @@
"label": "start-all-tasks",
"dependsOn": [
"build:pkg",
"phoenix-web",
"cert-web",
"aorta-web",
"dmp-web",
@ -37,18 +36,6 @@
"dev:logger"
]
},
{
"label": "phoneix-web",
"type": "shell",
"command": "pnpm",
"args": [
"dev:phoenix"
],
"dependsOn": [
"build:pkg"
],
"problemMatcher": []
},
{
"label": "aorta-web",
"type": "shell",

12
apps/aorta/package.json
View File

@ -23,22 +23,16 @@
"js-cookie": "3.0.5",
"three": "0.156.1",
"path-to-regexp": "6.2.1",
"cornerstone-core": "2.6.1",
"dicom-parser": "1.8.21",
"@msgpack/msgpack": "3.0.0-beta2",
"pako": "2.1.0",
"@kitware/vtk.js": "29.2.0",
"@cornerstonejs/dicom-image-loader": "1.41.0",
"cornerstone-wado-image-loader": "4.13.2",
"@cornerstonejs/core": "1.41.0",
"dcmjs": "0.30.0",
"dicomweb-client": "0.10.3",
"@cornerstonejs/tools": "1.41.0",
"@cornerstonejs/streaming-image-volume-loader": "1.41.0",
"@cornerstonejs/calculate-suv": "1.1.0",
"vtk.js": "29.2.0",
"@itk-wasm/dicom": "5.0.2",
"itk-image-io": "^1.0.0-b.18",
"itk-mesh-io": "^1.0.0-b.18",
"web-workers": "0.9.1"
"dicomweb-client": "0.10.3"
},
"devDependencies": {
"@babel/core": "^7.21.8",

143
apps/aorta/public/d-apple.json
View File

@ -1,143 +0,0 @@
[
"5.0.37",
[
"apple a14",
"14",
"a14 apple",
0,
[
[
2704,
1756,
120
]
]
],
[
"apple m1",
"1",
"apple m1",
0,
[
[
2880,
1800,
198
]
]
],
[
"apple m1 max",
"1",
"apple m1 max",
0,
[
[
3456,
2234,
556
]
]
],
[
"apple m1 pro",
"1",
"apple m1 pro",
0,
[
[
3024,
1964,
342
]
]
],
[
"apple m1 ultra",
"1",
"apple m1 ultra",
0,
[
[
5120,
2880,
437
]
]
],
[
"apple m2",
"2",
"apple m2",
0,
[
[
2880,
1800,
60
],
[
2940,
1912,
209
]
]
],
[
"apple m2 max",
"2",
"apple m2 max",
0,
[
[
3456,
2234,
120
]
]
],
[
"apple m2 pro",
"2",
"apple m2 pro",
0,
[
[
3024,
1964,
120
],
[
5120,
2880,
60
]
]
],
[
"apple m2 ultra",
"2",
"apple m2 ultra",
0,
[
[
5120,
2880,
60
]
]
],
[
"apple paravirtual device",
"",
"apple device paravirtual",
0,
[
[
1024,
768,
30
]
]
]
]

2
apps/aorta/scripts/dev.proxy.ts
View File

@ -31,5 +31,5 @@ export const proxyMap: TProxyMap = {
target: "http://localhost:5000/",
changeOrigin: true,
pathRewrite: { "^/py": "" },
}
},
};

17
apps/aorta/scripts/webpack.common.ts
View File

@ -7,7 +7,6 @@ import jsonLoader from "./loaders/json.loader";
import imgLoader from "./loaders/img.loader";
import babelLoader from "./loaders/babel.loader";
import { cssLoader, lessLoader } from "./loaders/style.loader";
import CopyWebpackPlugin from "copy-webpack-plugin";
// 加载配置文件
const envConfig = dotenv.config({
@ -64,22 +63,6 @@ const baseConfig: Configuration = {
"process.env.BASE_ENV": JSON.stringify(process.env.BASE_ENV),
"process.env.NODE_ENV": JSON.stringify(process.env.NODE_ENV),
}),
new CopyWebpackPlugin({
patterns: [
{
from: path.join(__dirname, "../", "node_modules", "web-workers"),
to: path.join(__dirname, "dist", "itk", "web-workers"),
},
{
from: path.join(__dirname, "../", "node_modules", "itk-image-io"),
to: path.join(__dirname, "dist", "itk", "image-io"),
},
{
from: path.join(__dirname, "../", "node_modules", "itk-mesh-io"),
to: path.join(__dirname, "dist", "itk", "mesh-io"),
},
],
}),
],
};

2
apps/aorta/scripts/webpack.dev.ts
View File

@ -20,7 +20,7 @@ interface Configuration extends WebpackConfiguration {
devServer?: WebpackDevServerConfiguration;
}
const host = "0.0.0.0";
const host = "127.0.0.1";
const port = 9000;
// 合并公共配置,并添加开发环境配置

211
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/getPTImageIdInstanceMetadata.ts
View File

@ -1,211 +0,0 @@
import { metaData } from "@cornerstonejs/core";
import type { InstanceMetadata } from "@cornerstonejs/calculate-suv";
export default function getPTImageIdInstanceMetadata(
imageId: string
): InstanceMetadata {
const petSequenceModule = metaData.get("petIsotopeModule", imageId);
const generalSeriesModule = metaData.get("generalSeriesModule", imageId);
const patientStudyModule = metaData.get("patientStudyModule", imageId);
const ptSeriesModule = metaData.get("petSeriesModule", imageId);
const ptImageModule = metaData.get("petImageModule", imageId);
if (!petSequenceModule) {
throw new Error("petSequenceModule metadata is required");
}
const radiopharmaceuticalInfo = petSequenceModule.radiopharmaceuticalInfo;
const { seriesDate, seriesTime, acquisitionDate, acquisitionTime } =
generalSeriesModule;
const { patientWeight } = patientStudyModule;
const { correctedImage, units, decayCorrection } = ptSeriesModule;
if (
seriesDate === undefined ||
seriesTime === undefined ||
patientWeight === undefined ||
acquisitionDate === undefined ||
acquisitionTime === undefined ||
correctedImage === undefined ||
units === undefined ||
decayCorrection === undefined ||
radiopharmaceuticalInfo.radionuclideTotalDose === undefined ||
radiopharmaceuticalInfo.radionuclideHalfLife === undefined ||
(radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime === undefined &&
seriesDate === undefined &&
radiopharmaceuticalInfo.radiopharmaceuticalStartTime === undefined)
//
) {
throw new Error("required metadata are missing");
}
const instanceMetadata: InstanceMetadata = {
CorrectedImage: correctedImage,
Units: units,
RadionuclideHalfLife: radiopharmaceuticalInfo.radionuclideHalfLife,
RadionuclideTotalDose: radiopharmaceuticalInfo.radionuclideTotalDose,
DecayCorrection: decayCorrection,
PatientWeight: patientWeight,
SeriesDate: seriesDate,
SeriesTime: seriesTime,
AcquisitionDate: acquisitionDate,
AcquisitionTime: acquisitionTime,
};
if (
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime &&
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== undefined &&
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime === "string"
) {
instanceMetadata.RadiopharmaceuticalStartDateTime =
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime;
}
if (
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime &&
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== undefined &&
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== "string"
) {
const dateString = convertInterfaceDateToString(
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime
);
instanceMetadata.RadiopharmaceuticalStartDateTime = dateString;
}
if (
instanceMetadata.AcquisitionDate &&
instanceMetadata.AcquisitionDate !== undefined &&
typeof instanceMetadata.AcquisitionDate !== "string"
) {
const dateString = convertInterfaceDateToString(
instanceMetadata.AcquisitionDate
);
instanceMetadata.AcquisitionDate = dateString;
}
if (
instanceMetadata.SeriesDate &&
instanceMetadata.SeriesDate !== undefined &&
typeof instanceMetadata.SeriesDate !== "string"
) {
const dateString = convertInterfaceDateToString(
instanceMetadata.SeriesDate
);
instanceMetadata.SeriesDate = dateString;
}
if (
radiopharmaceuticalInfo.radiopharmaceuticalStartTime &&
radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== undefined &&
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartTime === "string"
) {
instanceMetadata.RadiopharmaceuticalStartTime =
radiopharmaceuticalInfo.radiopharmaceuticalStartTime;
}
if (
radiopharmaceuticalInfo.radiopharmaceuticalStartTime &&
radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== undefined &&
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== "string"
) {
const timeString = convertInterfaceTimeToString(
radiopharmaceuticalInfo.radiopharmaceuticalStartTime
);
instanceMetadata.RadiopharmaceuticalStartTime = timeString;
}
if (
instanceMetadata.AcquisitionTime &&
instanceMetadata.AcquisitionTime !== undefined &&
typeof instanceMetadata.AcquisitionTime !== "string"
) {
const timeString = convertInterfaceTimeToString(
instanceMetadata.AcquisitionTime
);
instanceMetadata.AcquisitionTime = timeString;
}
if (
instanceMetadata.SeriesTime &&
instanceMetadata.SeriesTime !== undefined &&
typeof instanceMetadata.SeriesTime !== "string"
) {
const timeString = convertInterfaceTimeToString(
instanceMetadata.SeriesTime
);
instanceMetadata.SeriesTime = timeString;
}
if (
ptImageModule.frameReferenceTime &&
ptImageModule.frameReferenceTime !== undefined
) {
instanceMetadata.FrameReferenceTime = ptImageModule.frameReferenceTime;
}
if (
ptImageModule.actualFrameDuration &&
ptImageModule.actualFrameDuration !== undefined
) {
instanceMetadata.ActualFrameDuration = ptImageModule.actualFrameDuration;
}
if (
patientStudyModule.patientSex &&
patientStudyModule.patientSex !== undefined
) {
instanceMetadata.PatientSex = patientStudyModule.patientSex;
}
if (
patientStudyModule.patientSize &&
patientStudyModule.patientSize !== undefined
) {
instanceMetadata.PatientSize = patientStudyModule.patientSize;
}
// Todo: add private tags
// if (
// dicomMetaData['70531000'] ||
// dicomMetaData['70531000'] !== undefined ||
// dicomMetaData['70531009'] ||
// dicomMetaData['70531009'] !== undefined
// ) {
// const philipsPETPrivateGroup: PhilipsPETPrivateGroup = {
// SUVScaleFactor: dicomMetaData['70531000'],
// ActivityConcentrationScaleFactor: dicomMetaData['70531009'],
// };
// instanceMetadata.PhilipsPETPrivateGroup = philipsPETPrivateGroup;
// }
// if (dicomMetaData['0009100d'] && dicomMetaData['0009100d'] !== undefined) {
// instanceMetadata.GEPrivatePostInjectionDateTime = dicomMetaData['0009100d'];
// }
return instanceMetadata;
}
function convertInterfaceTimeToString(time): string {
const hours = `${time.hours || "00"}`.padStart(2, "0");
const minutes = `${time.minutes || "00"}`.padStart(2, "0");
const seconds = `${time.seconds || "00"}`.padStart(2, "0");
const fractionalSeconds = `${time.fractionalSeconds || "000000"}`.padEnd(
6,
"0"
);
const timeString = `${hours}${minutes}${seconds}.${fractionalSeconds}`;
return timeString;
}
function convertInterfaceDateToString(date): string {
const month = `${date.month}`.padStart(2, "0");
const day = `${date.day}`.padStart(2, "0");
const dateString = `${date.year}${month}${day}`;
return dateString;
}
export { getPTImageIdInstanceMetadata };

10
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/init.ts
View File

@ -1,10 +0,0 @@
import { initCornerstoneDICOMImageLoader } from "./initCornerstoneDicomImageLoader";
import initVolumeLoader from "./initVolumeLoader";
import { init as csRenderInit } from "@cornerstonejs/core";
// 入口
export const initCornerstone = async () => {
initCornerstoneDICOMImageLoader();
initVolumeLoader();
await csRenderInit();
};

17
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/initProviders.ts
View File

@ -1,17 +0,0 @@
import * as cornerstone from "@cornerstonejs/core";
import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider";
const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities;
export default function initProviders() {
cornerstone.metaData.addProvider(
ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider),
10000
);
cornerstone.metaData.addProvider(
calibratedPixelSpacingMetadataProvider.get.bind(
calibratedPixelSpacingMetadataProvider
),
11000
);
}

19
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/initVolumeLoader.ts
View File

@ -1,19 +0,0 @@
import { volumeLoader } from "@cornerstonejs/core";
import {
cornerstoneStreamingImageVolumeLoader,
cornerstoneStreamingDynamicImageVolumeLoader,
} from "@cornerstonejs/streaming-image-volume-loader";
export default function initVolumeLoader() {
volumeLoader.registerUnknownVolumeLoader(
cornerstoneStreamingImageVolumeLoader
);
volumeLoader.registerVolumeLoader(
"cornerstoneStreamingImageVolume",
cornerstoneStreamingImageVolumeLoader
);
volumeLoader.registerVolumeLoader(
"cornerstoneStreamingDynamicImageVolume",
cornerstoneStreamingDynamicImageVolumeLoader
);
}

17
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/ptScalingMetaDataProvider.ts
View File

@ -1,17 +0,0 @@
import { utilities as csUtils } from "@cornerstonejs/core";
const scalingPerImageId = {};
function addInstance(imageId, scalingMetaData) {
const imageURI = csUtils.imageIdToURI(imageId);
scalingPerImageId[imageURI] = scalingMetaData;
}
function get(type, imageId) {
if (type === "scalingModule") {
const imageURI = csUtils.imageIdToURI(imageId);
return scalingPerImageId[imageURI];
}
}
export default { addInstance, get };

243
apps/aorta/src/modules/Root/Viewer/Crosshair/index.tsx
View File

@ -1,243 +0,0 @@
import { useEffect, useRef } from "react";
import initDemo from "./util/initDemo.js";
import {
RenderingEngine,
Types,
Enums,
setVolumesForViewports,
volumeLoader,
getRenderingEngine,
} from "@cornerstonejs/core";
import * as cornerstoneTools from "@cornerstonejs/tools";
import createImageIdsAndCacheMetaData from "./util/createImageIdsAndCacheMetaData";
import { PublicViewportInput } from "@cornerstonejs/core/dist/types/types/IViewport.js";
import setCtTransferFunctionForVolumeActor from "./util/setCtTransferFunctionForVolumeActor";
import * as cornerstone from "@cornerstonejs/core";
const {
ToolGroupManager,
Enums: csToolsEnums,
CrosshairsTool,
StackScrollMouseWheelTool,
} = cornerstoneTools;
const { ViewportType } = Enums;
interface CrosshairMprProps {
children?: JSX.Element;
}
const viewportId1 = "CT_AXIAL";
const viewportId2 = "CT_SAGITTAL";
const viewportId3 = "CT_CORONAL";
const toolGroupId = "group";
const viewportColors = {
[viewportId1]: "rgb(200, 0, 0)",
[viewportId2]: "rgb(200, 200, 0)",
[viewportId3]: "rgb(0, 200, 0)",
};
const viewportReferenceLineControllable = [
viewportId1,
viewportId2,
viewportId3,
];
const viewportReferenceLineDraggableRotatable = [
viewportId1,
viewportId2,
viewportId3,
];
const viewportReferenceLineSlabThicknessControlsOn = [
viewportId1,
viewportId2,
viewportId3,
];
// Define a unique id for the volume
const volumeName = "CT_VOLUME_ID"; // Id of the volume less loader prefix
const volumeLoaderScheme = "cornerstoneStreamingImageVolume"; // Loader id which defines which volume loader to use
const volumeId = `${volumeLoaderScheme}:${volumeName}`; // VolumeId with loader id + volume id
function getReferenceLineColor(viewportId) {
return viewportColors[viewportId];
}
function getReferenceLineControllable(viewportId) {
const index = viewportReferenceLineControllable.indexOf(viewportId);
return index !== -1;
}
function getReferenceLineDraggableRotatable(viewportId) {
const index = viewportReferenceLineDraggableRotatable.indexOf(viewportId);
return index !== -1;
}
function getReferenceLineSlabThicknessControlsOn(viewportId) {
const index =
viewportReferenceLineSlabThicknessControlsOn.indexOf(viewportId);
return index !== -1;
}
const renderingEngineId = "myRenderingEngine";
export const CrosshairMpr = (props: CrosshairMprProps) => {
const viewportId1Ref = useRef(null);
const viewportId2Ref = useRef(null);
const viewportId3Ref = useRef(null);
const renderingEngine = useRef<RenderingEngine>();
const imageIds = useRef<string[]>();
const run = async () => {
initDemo();
// Get Cornerstone imageIds for the source data and fetch metadata into RAM
imageIds.current = await createImageIdsAndCacheMetaData({
StudyInstanceUID:
"1.2.840.113564.345049290535.9692.637552042156233117.433089",
SeriesInstanceUID:
"1.3.12.2.1107.5.1.4.76315.30000021042706150001900118311",
wadoRsRoot: "/dicom-web",
});
// Define a volume in memory
const volume = await volumeLoader.createAndCacheVolume(volumeId, {
imageIds: imageIds.current ?? [],
});
// Instantiate a rendering engine
renderingEngine.current = new RenderingEngine(renderingEngineId);
// Create the viewports
const viewportInputArray: PublicViewportInput[] = [
{
viewportId: viewportId1,
type: ViewportType.ORTHOGRAPHIC,
element: viewportId1Ref.current!,
defaultOptions: {
orientation: Enums.OrientationAxis.AXIAL,
background: [0, 0, 0],
},
},
{
viewportId: viewportId2,
type: ViewportType.ORTHOGRAPHIC,
element: viewportId2Ref.current!,
defaultOptions: {
orientation: Enums.OrientationAxis.SAGITTAL,
background: [0, 0, 0],
},
},
{
viewportId: viewportId3,
type: ViewportType.ORTHOGRAPHIC,
element: viewportId3Ref.current!,
defaultOptions: {
orientation: Enums.OrientationAxis.CORONAL,
background: [0, 0, 0],
},
},
];
renderingEngine.current.setViewports(viewportInputArray);
console.log(volume);
// Set the volume to load
volume.load();
// Set volumes on the viewports
await setVolumesForViewports(
renderingEngine.current,
[
{
volumeId,
callback: setCtTransferFunctionForVolumeActor,
},
],
[viewportId1, viewportId2, viewportId3]
);
// Define tool groups to add the segmentation display tool to
const toolGroup = ToolGroupManager.createToolGroup(toolGroupId);
if (toolGroup) {
// For the crosshairs to operate, the viewports must currently be
// added ahead of setting the tool active. This will be improved in the future.
toolGroup.addViewport(viewportId1, renderingEngineId);
toolGroup.addViewport(viewportId2, renderingEngineId);
toolGroup.addViewport(viewportId3, renderingEngineId);
// Manipulation Tools
toolGroup.addTool(StackScrollMouseWheelTool.toolName);
// Add Crosshairs tool and configure it to link the three viewports
// These viewports could use different tool groups. See the PET-CT example
// for a more complicated used case.
toolGroup.addTool(CrosshairsTool.toolName, {
getReferenceLineColor,
getReferenceLineControllable,
getReferenceLineDraggableRotatable,
getReferenceLineSlabThicknessControlsOn,
});
toolGroup.setToolActive(CrosshairsTool.toolName, {
bindings: [{ mouseButton: 1 }],
});
// As the Stack Scroll mouse wheel is a tool using the `mouseWheelCallback`
// hook instead of mouse buttons, it does not need to assign any mouse button.
toolGroup.setToolActive(StackScrollMouseWheelTool.toolName);
}
renderingEngine.current.renderViewports([
viewportId1,
viewportId2,
viewportId3,
]);
};
useEffect(() => {
cornerstoneTools.addTool(StackScrollMouseWheelTool);
cornerstoneTools.addTool(CrosshairsTool);
console.log("添加tool1");
run();
return () => {
// TODO: 是否需要写在组件，根据页面需要
console.log("卸载tool2");
cornerstoneTools.removeTool(StackScrollMouseWheelTool);
cornerstoneTools.removeTool(CrosshairsTool);
};
}, []);
useEffect(() => {
window.addEventListener("resize", () => {
renderingEngine.current?.resize();
});
}, []);
const test = () => {
// console.log(volumeLoader)
console.log(cornerstone.cache.getVolume(volumeId).getScalarData());
};
useEffect(() => {
document.addEventListener(Enums.Events.VOLUME_CACHE_VOLUME_ADDED, () => {
console.log(111);
});
}, []);
return (
<div>
<div style={{ display: "flex", gap: 20 }}>
<div style={{ width: 300, height: 300 }} ref={viewportId1Ref}></div>
<div style={{ width: 300, height: 300 }} ref={viewportId2Ref}></div>
<div style={{ width: 300, height: 300 }} ref={viewportId3Ref}></div>
</div>
<button onClick={test}>测试</button>
</div>
);
};

65
apps/aorta/src/modules/Root/Viewer/Crosshair/util/convertMultiframeImageIds.js
View File

@ -1,65 +0,0 @@
import { metaData } from '@cornerstonejs/core';
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
/**
* preloads imageIds metadata in memory
**/
async function prefetchMetadataInformation(imageIdsToPrefetch) {
for (let i = 0; i < imageIdsToPrefetch.length; i++) {
await cornerstoneDICOMImageLoader.wadouri.loadImage(imageIdsToPrefetch[i])
.promise;
}
}
function getFrameInformation(imageId) {
if (imageId.includes('wadors:')) {
const frameIndex = imageId.indexOf('/frames/');
const imageIdFrameless =
frameIndex > 0 ? imageId.slice(0, frameIndex + 8) : imageId;
return {
frameIndex,
imageIdFrameless,
};
} else {
const frameIndex = imageId.indexOf('&frame=');
let imageIdFrameless =
frameIndex > 0 ? imageId.slice(0, frameIndex + 7) : imageId;
if (!imageIdFrameless.includes('&frame=')) {
imageIdFrameless = imageIdFrameless + '&frame=';
}
return {
frameIndex,
imageIdFrameless,
};
}
}
/**
* Receives a list of imageids possibly referring to multiframe dicom images
* and returns a list of imageid where each imageid referes to one frame.
* For each imageId representing a multiframe image with n frames,
* it will create n new imageids, one for each frame, and returns the new list of imageids
* If a particular imageid no refer to a mutiframe image data, it will be just copied into the new list
* @returns new list of imageids where each imageid represents a frame
*/
function convertMultiframeImageIds(imageIds) {
const newImageIds = [];
imageIds.forEach((imageId) => {
const { imageIdFrameless } = getFrameInformation(imageId);
const instanceMetaData = metaData.get('multiframeModule', imageId);
if (
instanceMetaData &&
instanceMetaData.NumberOfFrames &&
instanceMetaData.NumberOfFrames > 1
) {
const NumberOfFrames = instanceMetaData.NumberOfFrames;
for (let i = 0; i < NumberOfFrames; i++) {
const newImageId = imageIdFrameless + (i + 1);
newImageIds.push(newImageId);
}
} else {
newImageIds.push(imageId);
}
});
return newImageIds;
}
export { convertMultiframeImageIds, prefetchMetadataInformation };

101
apps/aorta/src/modules/Root/Viewer/Crosshair/util/createImageIdsAndCacheMetaData.js
View File

@ -1,101 +0,0 @@
import { api } from 'dicomweb-client';
import dcmjs from 'dcmjs';
import { utilities } from '@cornerstonejs/core';
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
import getPixelSpacingInformation from './getPixelSpacingInformation';
import { convertMultiframeImageIds } from './convertMultiframeImageIds';
import removeInvalidTags from './removeInvalidTags';
const { DicomMetaDictionary } = dcmjs.data;
const { calibratedPixelSpacingMetadataProvider } = utilities;
/**
/**
* Uses dicomweb-client to fetch metadata of a study, cache it in cornerstone,
* and return a list of imageIds for the frames.
*
* Uses the app config to choose which study to fetch, and which
* dicom-web server to fetch it from.
*
* @returns {string[]} An array of imageIds for instances in the study.
*/
export default async function createImageIdsAndCacheMetaData({
StudyInstanceUID,
SeriesInstanceUID,
SOPInstanceUID = null,
wadoRsRoot,
client = null,
}) {
const SOP_INSTANCE_UID = '00080018';
const SERIES_INSTANCE_UID = '0020000E';
const MODALITY = '00080060';
const studySearchOptions = {
studyInstanceUID: StudyInstanceUID,
seriesInstanceUID: SeriesInstanceUID,
};
client = client || new api.DICOMwebClient({ url: wadoRsRoot });
let instances = await client.retrieveSeriesMetadata(studySearchOptions);
// if sop instance is provided we should filter the instances to only include the one we want
if (SOPInstanceUID) {
instances = instances.filter((instance) => {
return instance[SOP_INSTANCE_UID].Value[0] === SOPInstanceUID;
});
}
const modality = instances[0][MODALITY].Value[0];
let imageIds = instances.map((instanceMetaData) => {
const SeriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0];
const SOPInstanceUIDToUse =
SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0];
const prefix = 'wadors:';
const imageId =
prefix +
wadoRsRoot +
'/studies/' +
StudyInstanceUID +
'/series/' +
SeriesInstanceUID +
'/instances/' +
SOPInstanceUIDToUse +
'/frames/1';
cornerstoneDICOMImageLoader.wadors.metaDataManager.add(
imageId,
instanceMetaData
);
return imageId;
});
// if the image ids represent multiframe information, creates a new list with one image id per frame
// if not multiframe data available, just returns the same list given
imageIds = convertMultiframeImageIds(imageIds);
imageIds.forEach((imageId) => {
let instanceMetaData =
cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId);
// It was using JSON.parse(JSON.stringify(...)) before but it is 8x slower
instanceMetaData = removeInvalidTags(instanceMetaData);
if (instanceMetaData) {
// Add calibrated pixel spacing
const metadata = DicomMetaDictionary.naturalizeDataset(instanceMetaData);
const pixelSpacing = getPixelSpacingInformation(metadata);
if (pixelSpacing) {
calibratedPixelSpacingMetadataProvider.add(imageId, {
rowPixelSpacing: parseFloat(pixelSpacing[0]),
columnPixelSpacing: parseFloat(pixelSpacing[1]),
});
}
}
});
return imageIds;
}

136
apps/aorta/src/modules/Root/Viewer/Crosshair/util/getPixelSpacingInformation.js
View File

@ -1,136 +0,0 @@
// See https://github.com/OHIF/Viewers/blob/94a9067fe3d291d30e25a1bda5913511388edea2/platform/core/src/utils/metadataProvider/getPixelSpacingInformation.js
export default function getPixelSpacingInformation(instance) {
// See http://gdcm.sourceforge.net/wiki/index.php/Imager_Pixel_Spacing
// TODO: Add Ultrasound region spacing
// TODO: Add manual calibration
// TODO: Use ENUMS from dcmjs
const projectionRadiographSOPClassUIDs = [
'1.2.840.10008.5.1.4.1.1.1', // CR Image Storage
'1.2.840.10008.5.1.4.1.1.1.1', // Digital X-Ray Image Storage – for Presentation
'1.2.840.10008.5.1.4.1.1.1.1.1', // Digital X-Ray Image Storage – for Processing
'1.2.840.10008.5.1.4.1.1.1.2', // Digital Mammography X-Ray Image Storage – for Presentation
'1.2.840.10008.5.1.4.1.1.1.2.1', // Digital Mammography X-Ray Image Storage – for Processing
'1.2.840.10008.5.1.4.1.1.1.3', // Digital Intra – oral X-Ray Image Storage – for Presentation
'1.2.840.10008.5.1.4.1.1.1.3.1', // Digital Intra – oral X-Ray Image Storage – for Processing
'1.2.840.10008.5.1.4.1.1.12.1', // X-Ray Angiographic Image Storage
'1.2.840.10008.5.1.4.1.1.12.1.1', // Enhanced XA Image Storage
'1.2.840.10008.5.1.4.1.1.12.2', // X-Ray Radiofluoroscopic Image Storage
'1.2.840.10008.5.1.4.1.1.12.2.1', // Enhanced XRF Image Storage
'1.2.840.10008.5.1.4.1.1.12.3', // X-Ray Angiographic Bi-plane Image Storage Retired
];
const {
PixelSpacing,
ImagerPixelSpacing,
SOPClassUID,
PixelSpacingCalibrationType,
PixelSpacingCalibrationDescription,
EstimatedRadiographicMagnificationFactor,
SequenceOfUltrasoundRegions,
} = instance;
const isProjection = projectionRadiographSOPClassUIDs.includes(SOPClassUID);
const TYPES = {
NOT_APPLICABLE: 'NOT_APPLICABLE',
UNKNOWN: 'UNKNOWN',
CALIBRATED: 'CALIBRATED',
DETECTOR: 'DETECTOR',
};
if (!isProjection) {
return PixelSpacing;
}
if (isProjection && !ImagerPixelSpacing) {
// If only Pixel Spacing is present, and this is a projection radiograph,
// PixelSpacing should be used, but the user should be informed that
// what it means is unknown
return {
PixelSpacing,
type: TYPES.UNKNOWN,
isProjection,
};
} else if (
PixelSpacing &&
ImagerPixelSpacing &&
PixelSpacing === ImagerPixelSpacing
) {
// If Imager Pixel Spacing and Pixel Spacing are present and they have the same values,
// then the user should be informed that the measurements are at the detector plane
return {
PixelSpacing,
type: TYPES.DETECTOR,
isProjection,
};
} else if (
PixelSpacing &&
ImagerPixelSpacing &&
PixelSpacing !== ImagerPixelSpacing
) {
// If Imager Pixel Spacing and Pixel Spacing are present and they have different values,
// then the user should be informed that these are "calibrated"
// (in some unknown manner if Pixel Spacing Calibration Type and/or
// Pixel Spacing Calibration Description are absent)
return {
PixelSpacing,
type: TYPES.CALIBRATED,
isProjection,
PixelSpacingCalibrationType,
PixelSpacingCalibrationDescription,
};
} else if (!PixelSpacing && ImagerPixelSpacing) {
let CorrectedImagerPixelSpacing = ImagerPixelSpacing;
if (EstimatedRadiographicMagnificationFactor) {
// Note that in IHE Mammo profile compliant displays, the value of Imager Pixel Spacing is required to be corrected by
// Estimated Radiographic Magnification Factor and the user informed of that.
// TODO: should this correction be done before all of this logic?
CorrectedImagerPixelSpacing = ImagerPixelSpacing.map(
(pixelSpacing) =>
pixelSpacing / EstimatedRadiographicMagnificationFactor
);
} else {
console.warn(
'EstimatedRadiographicMagnificationFactor was not present. Unable to correct ImagerPixelSpacing.'
);
}
return {
PixelSpacing: CorrectedImagerPixelSpacing,
isProjection,
};
} else if (
SequenceOfUltrasoundRegions &&
typeof SequenceOfUltrasoundRegions === 'object'
) {
const { PhysicalDeltaX, PhysicalDeltaY } = SequenceOfUltrasoundRegions;
const USPixelSpacing = [PhysicalDeltaX * 10, PhysicalDeltaY * 10];
return {
PixelSpacing: USPixelSpacing,
};
} else if (
SequenceOfUltrasoundRegions &&
Array.isArray(SequenceOfUltrasoundRegions) &&
SequenceOfUltrasoundRegions.length > 1
) {
console.warn(
'Sequence of Ultrasound Regions > one entry. This is not yet implemented, all measurements will be shown in pixels.'
);
} else if (isProjection === false && !ImagerPixelSpacing) {
// If only Pixel Spacing is present, and this is not a projection radiograph,
// we can stop here
return {
PixelSpacing,
type: TYPES.NOT_APPLICABLE,
isProjection,
};
}
console.warn(
'Unknown combination of PixelSpacing and ImagerPixelSpacing identified. Unable to determine spacing.'
);
}

41
apps/aorta/src/modules/Root/Viewer/Crosshair/util/initCornerstoneDICOMImageLoader.js
View File

@ -1,41 +0,0 @@
import dicomParser from 'dicom-parser';
import * as cornerstone from '@cornerstonejs/core';
import * as cornerstoneTools from '@cornerstonejs/tools';
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
window.cornerstone = cornerstone;
window.cornerstoneTools = cornerstoneTools;
const { preferSizeOverAccuracy, useNorm16Texture } =
cornerstone.getConfiguration().rendering;
export default function initCornerstoneDICOMImageLoader() {
// TODO: 此处非常的蛇皮
cornerstone.setUseSharedArrayBuffer(false)
cornerstone.setConfiguration({
detectGPUConfig: {
benchmarksURL: "http://localhost:9000"
}
})
cornerstoneDICOMImageLoader.external.cornerstone = cornerstone;
cornerstoneDICOMImageLoader.external.dicomParser = dicomParser;
cornerstoneDICOMImageLoader.configure({
useWebWorkers: true,
decodeConfig: {
convertFloatPixelDataToInt: false,
use16BitDataType: preferSizeOverAccuracy || useNorm16Texture,
},
});
const config = {
maxWebWorkers: navigator.hardwareConcurrency ? Math.min(navigator.hardwareConcurrency, 7) : 1,
startWebWorkersOnDemand: false,
taskConfiguration: {
decodeTask: {
initializeCodecsOnStartup: false,
strict: false,
},
},
};
cornerstoneDICOMImageLoader.webWorkerManager.initialize(config);
}

13
apps/aorta/src/modules/Root/Viewer/Crosshair/util/initDemo.js
View File

@ -1,13 +0,0 @@
import initProviders from './initProviders.js';
import initCornerstoneDICOMImageLoader from './initCornerstoneDICOMImageLoader';
import initVolumeLoader from './initVolumeLoader';
import { init as csRenderInit } from '@cornerstonejs/core';
import { init as csToolsInit } from '@cornerstonejs/tools';
export default async function initDemo() {
initProviders();
initCornerstoneDICOMImageLoader();
initVolumeLoader();
await csRenderInit();
await csToolsInit();
}

17
apps/aorta/src/modules/Root/Viewer/Crosshair/util/initProviders.js
View File

@ -1,17 +0,0 @@
import * as cornerstone from '@cornerstonejs/core';
import ptScalingMetaDataProvider from './ptScalingMetaDataProvider';
const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities;
export default function initProviders() {
cornerstone.metaData.addProvider(
ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider),
10000
);
cornerstone.metaData.addProvider(
calibratedPixelSpacingMetadataProvider.get.bind(
calibratedPixelSpacingMetadataProvider
),
11000
);
}

19
apps/aorta/src/modules/Root/Viewer/Crosshair/util/initVolumeLoader.js
View File

@ -1,19 +0,0 @@
import { volumeLoader } from '@cornerstonejs/core';
import {
cornerstoneStreamingImageVolumeLoader,
cornerstoneStreamingDynamicImageVolumeLoader,
} from '@cornerstonejs/streaming-image-volume-loader';
export default function initVolumeLoader() {
volumeLoader.registerUnknownVolumeLoader(
cornerstoneStreamingImageVolumeLoader
);
volumeLoader.registerVolumeLoader(
'cornerstoneStreamingImageVolume',
cornerstoneStreamingImageVolumeLoader
);
volumeLoader.registerVolumeLoader(
'cornerstoneStreamingDynamicImageVolume',
cornerstoneStreamingDynamicImageVolumeLoader
);
}

17
apps/aorta/src/modules/Root/Viewer/Crosshair/util/ptScalingMetaDataProvider.js
View File

@ -1,17 +0,0 @@
import { utilities as csUtils } from '@cornerstonejs/core';
const scalingPerImageId = {};
function addInstance(imageId, scalingMetaData) {
const imageURI = csUtils.imageIdToURI(imageId);
scalingPerImageId[imageURI] = scalingMetaData;
}
function get(type, imageId) {
if (type === 'scalingModule') {
const imageURI = csUtils.imageIdToURI(imageId);
return scalingPerImageId[imageURI];
}
}
export default { addInstance, get };

33
apps/aorta/src/modules/Root/Viewer/Crosshair/util/removeInvalidTags.js
View File

@ -1,33 +0,0 @@
/**
* Remove invalid tags from a metadata and return a new object.
*
* At this time it is only removing tags that has `null` or `undefined` values
* which is our main goal because that breaks when `naturalizeDataset(...)` is
* called.
*
* Validating the tag id using regex like /^[a-fA-F0-9]{8}$/ make it run
* +50% slower and looping through all characteres (split+every+Set or simple
* FOR+Set) double the time it takes to run. It is currently taking +12ms/1k
* images on average which can change depending on the machine.
*
* @param srcMetadata - source metadata
* @returns new metadata object without invalid tags
*/
function removeInvalidTags(srcMetadata) {
// Object.create(null) make it ~9% faster
const dstMetadata = Object.create(null);
const tagIds = Object.keys(srcMetadata);
let tagValue;
tagIds.forEach((tagId) => {
tagValue = srcMetadata[tagId];
if (tagValue !== undefined && tagValue !== null) {
dstMetadata[tagId] = tagValue;
}
});
return dstMetadata;
}
export { removeInvalidTags as default, removeInvalidTags };

16
apps/aorta/src/modules/Root/Viewer/Crosshair/util/setCtTransferFunctionForVolumeActor.js
View File

@ -1,16 +0,0 @@
const windowWidth = 400;
const windowCenter = 40;
const lower = windowCenter - windowWidth / 2.0;
const upper = windowCenter + windowWidth / 2.0;
const ctVoiRange = { lower, upper };
export default function setCtTransferFunctionForVolumeActor({ volumeActor }) {
volumeActor
.getProperty()
.getRGBTransferFunction(0)
.setMappingRange(lower, upper);
}
export { ctVoiRange };

87
apps/aorta/src/modules/Root/Viewer/LocalMpr/dicomLoader.js
View File

@ -1,87 +0,0 @@
import macro from "@kitware/vtk.js/macro";
import Helper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
const { convertItkToVtkImage } = Helper;
import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
function getArrayName(filename) {
const idx = filename.lastIndexOf(".");
const name = idx > -1 ? filename.substring(0, idx) : filename;
return `Scalars ${name}`;
}
// ----------------------------------------------------------------------------
// vtkITKDicomImageReader methods
// ----------------------------------------------------------------------------
function vtkITKDicomImageReader(publicAPI, model) {
// Set our className
model.classHierarchy.push("vtkITKDicomImageReader");
// Returns a promise to signal when image is ready
publicAPI.readFileSeries = (files, fileName) => {
if (!files || !files.length || files === model.files) {
return Promise.resolve();
}
if (fileName && fileName !== model.fileName) {
model.fileName = fileName;
}
model.files = files;
return readImageDICOMFileSeries(null, files)
.then(({ webWorker, image }) => {
webWorker.terminate();
return image;
})
.then(itkImage => {
const imageData = convertItkToVtkImage(itkImage, {
scalarArrayName: model.arrayName || getArrayName(model.fileName)
});
model.output[0] = imageData;
publicAPI.modified();
return imageData;
});
};
publicAPI.requestData = (/* inData, outData */) => {
publicAPI.readFileSeries(model.files, model.fileName);
};
}
// ----------------------------------------------------------------------------
// Object factory
// ----------------------------------------------------------------------------
const DEFAULT_VALUES = {
fileName: "",
// If null/undefined a unique array will be generated
arrayName: null
};
// ----------------------------------------------------------------------------
export function extend(publicAPI, model, initialValues = {}) {
Object.assign(model, DEFAULT_VALUES, initialValues);
// Build VTK API
macro.obj(publicAPI, model);
macro.algo(publicAPI, model, 0, 1);
macro.setGet(publicAPI, model, ["fileName", "arrayName"]);
// vtkITKDicomImageReader methods
vtkITKDicomImageReader(publicAPI, model);
}
// ----------------------------------------------------------------------------
export const newInstance = macro.newInstance(extend, "vtkITKDicomImageReader");
// ----------------------------------------------------------------------------
export default { newInstance, extend };

74
apps/aorta/src/modules/Root/Viewer/LocalMpr/index.tsx
View File

@ -1,74 +0,0 @@
import { useRef, useState } from "react";
import dicomParser from "dicom-parser";
import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
// import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
import { readImageDicomFileSeries } from "@itk-wasm/dicom";
// import { readImageDicomFileSeries } from 'itk-wasm'
// import { readImageDICOMFileSeries } from "itk-wasm";
interface LocalMprProps {
children?: JSX.Element;
}
export const LocalMpr = (props: LocalMprProps) => {
const containerRef = useRef(null);
const handleFolderUpload = async (
event: React.ChangeEvent<HTMLInputElement>
) => {
if (event.target.files) {
const files = event.target.files;
if (!files.length) {
return;
}
const fileList: File[] = [];
for (let i = 0; i < files.length; i++) {
fileList.push(files[i]);
}
const image = await readImageDicomFileSeries(null, {
inputImages: fileList,
});
const vtkImage = vtkITKHelper.convertItkToVtkImage(image);
const volume = vtkVolume.newInstance();
const mapper = vtkVolumeMapper.newInstance();
volume.setMapper(mapper);
mapper.setInputData(vtkImage);
// 创建 vtk 的全屏渲染窗口
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
background: [0, 0, 0],
container: containerRef.current!,
});
const renderer = fullScreenRenderer.getRenderer();
const renderWindow = fullScreenRenderer.getRenderWindow();
// 将 volume 添加到渲染器
renderer.addVolume(volume);
// 设置相机位置等
renderer.resetCamera();
renderWindow.render();
}
};
return (
<div>
<div>
<input
type="file"
webkitdirectory="true"
directory=""
onChange={handleFolderUpload}
/>
</div>
<div style={{ width: 400, height: 400 }} ref={containerRef}></div>
</div>
);
};

0
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/convertMultiframeImageIds.ts → apps/aorta/src/modules/Root/Viewer/VolumeViewer/convertMultiframeImageIds.ts
View File

57
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/createImageIdsAndCacheMetaData.ts → apps/aorta/src/modules/Root/Viewer/VolumeViewer/createImageIdsAndCacheMetaData.ts
View File

@ -5,9 +5,6 @@ import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
import { getPixelSpacingInformation } from "./getPixelSpacingInformation";
import { convertMultiframeImageIds } from "./convertMultiframeImageIds";
import { removeInvalidTags } from "./removeInvalidTags";
import getPTImageIdInstanceMetadata from "./getPTImageIdInstanceMetadata";
import { calculateSUVScalingFactors } from "@cornerstonejs/calculate-suv";
import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider";
const { DicomMetaDictionary } = dcmjs.data;
const { calibratedPixelSpacingMetadataProvider } = utilities;
@ -47,22 +44,11 @@ export const createImageIdsAndCacheMetaData = async (
console.log("modality", modality);
let imageIds = instances.map((instanceMetaData: any) => {
const SeriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0];
const SOPInstanceUIDToUse =
const seriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0];
const sopInstanceUIDToUse =
options.SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0];
const prefix = "wadors:";
const imageId =
prefix +
options.wadoRsRoot +
"/studies/" +
options.StudyInstanceUID +
"/series/" +
SeriesInstanceUID +
"/instances/" +
SOPInstanceUIDToUse +
"/frames/1";
const imageId = `wadors:${options.wadoRsRoot}/studies/${options.StudyInstanceUID}/series/${seriesInstanceUID}/instances/${sopInstanceUIDToUse}/frames/1`;
cornerstoneDICOMImageLoader.wadors.metaDataManager.add(
imageId,
@ -76,7 +62,6 @@ export const createImageIdsAndCacheMetaData = async (
imageIds.forEach((imageId) => {
let instanceMetaData =
cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId);
instanceMetaData = removeInvalidTags(instanceMetaData);
if (instanceMetaData) {
@ -96,44 +81,8 @@ export const createImageIdsAndCacheMetaData = async (
}
});
if (modality === "PT") {
const InstanceMetadataArray: any = [];
imageIds.forEach((imageId) => {
const instanceMetadata = getPTImageIdInstanceMetadata(imageId);
// TODO: Temporary fix because static-wado is producing a string, not an array of values
// (or maybe dcmjs isn't parsing it correctly?)
// It's showing up like 'DECY\\ATTN\\SCAT\\DTIM\\RAN\\RADL\\DCAL\\SLSENS\\NORM'
// but calculate-suv expects ['DECY', 'ATTN', ...]
if (typeof instanceMetadata.CorrectedImage === "string") {
instanceMetadata.CorrectedImage =
instanceMetadata.CorrectedImage.split("\\");
}
if (instanceMetadata) {
InstanceMetadataArray.push(instanceMetadata);
}
});
if (InstanceMetadataArray.length) {
try {
const suvScalingFactors = calculateSUVScalingFactors(
InstanceMetadataArray
);
InstanceMetadataArray.forEach((instanceMetadata, index) => {
ptScalingMetaDataProvider.addInstance(
imageIds[index],
suvScalingFactors[index]
);
});
} catch (error) {
console.log(error);
}
}
}
return imageIds;
} catch (error) {
console.log(error);
throw new Error("PACS 中数据不存在");
}
};

0
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/getPixelSpacingInformation.ts → apps/aorta/src/modules/Root/Viewer/VolumeViewer/getPixelSpacingInformation.ts
View File

8
apps/aorta/src/modules/Root/Viewer/StackViewer/index.tsx → apps/aorta/src/modules/Root/Viewer/VolumeViewer/index.tsx
View File

@ -1,13 +1,13 @@
import { useEffect, useRef } from "react";
import { Enums, RenderingEngine, cache } from "@cornerstonejs/core";
import { initCornerstone } from "../CornerstoneDicomLoader/init";
import { createImageIdsAndCacheMetaData } from "../CornerstoneDicomLoader/createImageIdsAndCacheMetaData";
import { initCornerstone } from "./initCornerstoneDicomImageLoader";
import { createImageIdsAndCacheMetaData } from "./createImageIdsAndCacheMetaData";
import {
IStackViewport,
PublicViewportInput,
} from "@cornerstonejs/core/dist/types/types";
interface StackViewerProps {
interface VolumeViewerProps {
children?: JSX.Element;
}
@ -21,7 +21,7 @@ const StudyInstanceUID =
const SeriesInstanceUID =
"1.3.12.2.1107.5.1.4.76315.30000021042706150001900118311";
export const StackViewer = (props: StackViewerProps) => {
export const VolumeViewer = (props: VolumeViewerProps) => {
const dicomRef = useRef(null);
const run = async () => {

25
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/initCornerstoneDicomImageLoader.ts → apps/aorta/src/modules/Root/Viewer/VolumeViewer/initCornerstoneDICOMImageLoader.ts
View File

@ -1,20 +1,12 @@
import { init as csRenderInit } from "@cornerstonejs/core";
import dicomParser from "dicom-parser";
import * as cornerstone from "@cornerstonejs/core";
import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
window.cornerstone = cornerstone;
export const initCornerstoneDICOMImageLoader = () => {
const initCornerstoneDICOMImageLoader = () => {
const { preferSizeOverAccuracy, useNorm16Texture } =
cornerstone.getConfiguration().rendering;
cornerstone.setConfiguration({
detectGPUConfig: {
benchmarksURL: "http://localhost:9000",
},
rendering: cornerstone.getConfiguration().rendering,
});
cornerstoneDICOMImageLoader.external.cornerstone = cornerstone;
cornerstoneDICOMImageLoader.external.dicomParser = dicomParser;
cornerstoneDICOMImageLoader.configure({
@ -25,14 +17,8 @@ export const initCornerstoneDICOMImageLoader = () => {
},
});
let maxWebWorkers = 1;
if (navigator.hardwareConcurrency) {
maxWebWorkers = Math.min(navigator.hardwareConcurrency, 7);
}
const config = {
maxWebWorkers,
maxWebWorkers: navigator.hardwareConcurrency ?? 7,
startWebWorkersOnDemand: false,
taskConfiguration: {
decodeTask: {
@ -44,3 +30,8 @@ export const initCornerstoneDICOMImageLoader = () => {
cornerstoneDICOMImageLoader.webWorkerManager.initialize(config);
};
export const initCornerstone = async () => {
initCornerstoneDICOMImageLoader();
await csRenderInit();
};

0
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/removeInvalidTags.ts → apps/aorta/src/modules/Root/Viewer/VolumeViewer/removeInvalidTags.ts
View File

0
apps/aorta/src/modules/Root/Viewer/StackViewer/type.d.ts → apps/aorta/src/modules/Root/Viewer/VolumeViewer/type.d.ts vendored
View File

8
apps/aorta/src/modules/Root/Viewer/index.tsx
View File

@ -1,8 +1,6 @@
import { CrosshairMpr } from "./Crosshair";
import { DiffViewer } from "./DiffViewer";
import { LocalMpr } from "./LocalMpr";
import { MprViewer } from "./MprViewer";
import { StackViewer } from "./StackViewer";
import { VolumeViewer } from "./VolumeViewer";
interface RootViewerProps {
children?: JSX.Element;
@ -11,9 +9,7 @@ interface RootViewerProps {
export const RootViewer = (props: RootViewerProps) => {
return (
<div>
<LocalMpr />
{/* <CrosshairMpr /> */}
{/* <StackViewer /> */}
<VolumeViewer />
</div>
);
};

18
apps/phoenix/.eslintrc.cjs
View File

@ -1,18 +0,0 @@
module.exports = {
root: true,
env: { browser: true, es2020: true },
extends: [
'eslint:recommended',
'plugin:@typescript-eslint/recommended',
'plugin:react-hooks/recommended',
],
ignorePatterns: ['dist', '.eslintrc.cjs'],
parser: '@typescript-eslint/parser',
plugins: ['react-refresh'],
rules: {
'react-refresh/only-export-components': [
'warn',
{ allowConstantExport: true },
],
},
}

24
apps/phoenix/.gitignore vendored
View File

@ -1,24 +0,0 @@
# Logs
logs
*.log
npm-debug.log*
yarn-debug.log*
yarn-error.log*
pnpm-debug.log*
lerna-debug.log*
node_modules
dist
dist-ssr
*.local
# Editor directories and files
.vscode/*
!.vscode/extensions.json
.idea
.DS_Store
*.suo
*.ntvs*
*.njsproj
*.sln
*.sw?

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apps/phoenix/README.md
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# React + TypeScript + Vite
This template provides a minimal setup to get React working in Vite with HMR and some ESLint rules.
Currently, two official plugins are available:
- [@vitejs/plugin-react](https://github.com/vitejs/vite-plugin-react/blob/main/packages/plugin-react/README.md) uses [Babel](https://babeljs.io/) for Fast Refresh
- [@vitejs/plugin-react-swc](https://github.com/vitejs/vite-plugin-react-swc) uses [SWC](https://swc.rs/) for Fast Refresh
## Expanding the ESLint configuration
If you are developing a production application, we recommend updating the configuration to enable type aware lint rules:
- Configure the top-level `parserOptions` property like this:
```js
export default {
// other rules...
parserOptions: {
ecmaVersion: 'latest',
sourceType: 'module',
project: ['./tsconfig.json', './tsconfig.node.json'],
tsconfigRootDir: __dirname,
},
}
```
- Replace `plugin:@typescript-eslint/recommended` to `plugin:@typescript-eslint/recommended-type-checked` or `plugin:@typescript-eslint/strict-type-checked`
- Optionally add `plugin:@typescript-eslint/stylistic-type-checked`
- Install [eslint-plugin-react](https://github.com/jsx-eslint/eslint-plugin-react) and add `plugin:react/recommended` & `plugin:react/jsx-runtime` to the `extends` list

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apps/phoenix/index.html
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<!doctype html>
<html lang="en">
<head>
<meta charset="UTF-8" />
<link rel="icon" type="image/svg+xml" href="/vite.svg" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Vite + React + TS</title>
</head>
<body>
<div id="root"></div>
<script type="module" src="/src/main.tsx"></script>
</body>
</html>

33
apps/phoenix/package.json
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{
"name": "@tavi/phoenix",
"private": true,
"version": "0.0.0",
"type": "module",
"scripts": {
"dev": "vite",
"build": "tsc && vite build",
"lint": "eslint . --ext ts,tsx --report-unused-disable-directives --max-warnings 0",
"preview": "vite preview"
},
"dependencies": {
"react": "^18.2.0",
"react-dom": "^18.2.0",
"@kitware/vtk.js": "29.3.0",
"@itk-wasm/image-io": "0.5.2",
"@itk-wasm/mesh-io": "0.2.2",
"@itk-wasm/dicom": "5.0.2"
},
"devDependencies": {
"@types/react": "^18.2.43",
"@types/react-dom": "^18.2.17",
"@typescript-eslint/eslint-plugin": "^6.14.0",
"@typescript-eslint/parser": "^6.14.0",
"@vitejs/plugin-react": "^4.2.1",
"eslint": "^8.55.0",
"eslint-plugin-react-hooks": "^4.6.0",
"eslint-plugin-react-refresh": "^0.4.5",
"typescript": "^5.2.2",
"vite": "^5.0.8",
"vite-plugin-static-copy": "1.0.0"
}
}

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apps/phoenix/public/vite.svg
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<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="31.88" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 257"><defs><linearGradient id="IconifyId1813088fe1fbc01fb466" x1="-.828%" x2="57.636%" y1="7.652%" y2="78.411%"><stop offset="0%" stop-color="#41D1FF"></stop><stop offset="100%" stop-color="#BD34FE"></stop></linearGradient><linearGradient id="IconifyId1813088fe1fbc01fb467" x1="43.376%" x2="50.316%" y1="2.242%" y2="89.03%"><stop offset="0%" stop-color="#FFEA83"></stop><stop offset="8.333%" stop-color="#FFDD35"></stop><stop offset="100%" stop-color="#FFA800"></stop></linearGradient></defs><path fill="url(#IconifyId1813088fe1fbc01fb466)" d="M255.153 37.938L134.897 252.976c-2.483 4.44-8.862 4.466-11.382.048L.875 37.958c-2.746-4.814 1.371-10.646 6.827-9.67l120.385 21.517a6.537 6.537 0 0 0 2.322-.004l117.867-21.483c5.438-.991 9.574 4.796 6.877 9.62Z"></path><path fill="url(#IconifyId1813088fe1fbc01fb467)" d="M185.432.063L96.44 17.501a3.268 3.268 0 0 0-2.634 3.014l-5.474 92.456a3.268 3.268 0 0 0 3.997 3.378l24.777-5.718c2.318-.535 4.413 1.507 3.936 3.838l-7.361 36.047c-.495 2.426 1.782 4.5 4.151 3.78l15.304-4.649c2.372-.72 4.652 1.36 4.15 3.788l-11.698 56.621c-.732 3.542 3.979 5.473 5.943 2.437l1.313-2.028l72.516-144.72c1.215-2.423-.88-5.186-3.54-4.672l-25.505 4.922c-2.396.462-4.435-1.77-3.759-4.114l16.646-57.705c.677-2.35-1.37-4.583-3.769-4.113Z"></path></svg>
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128
apps/phoenix/src/App.tsx
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import { useEffect, useRef, useState } from "react";
import { readImageDicomFileSeries } from "@itk-wasm/dicom";
import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
import "@kitware/vtk.js/Rendering/Profiles/Volume";
import vtkRenderer from "@kitware/vtk.js/Rendering/Core/Renderer";
import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
import vtkRenderWindow from "@kitware/vtk.js/Rendering/Core/RenderWindow";
import "./app.css";
import {
checkExistenceInIndexedDB,
loadImageFromIndexedDB,
saveImageToIndexedDB,
} from "./util";
import { extractAxialSliceAsImage } from "./extract";
function App() {
const [files, setFiles] = useState<File[]>([]);
const inputRef = useRef<HTMLInputElement>(null);
const axialRef = useRef<HTMLElement | null>(null);
const sagittalRef = useRef<HTMLElement | null>(null);
const coronalRef = useRef<HTMLElement | null>(null);
const rendererRef = useRef<vtkRenderer>();
const mapperRef = useRef<vtkVolumeMapper>();
const actorRef = useRef<vtkVolume>();
const renderWindowRef = useRef<vtkRenderWindow>();
const [image, setImage] = useState();
useEffect(() => {
if (inputRef.current) inputRef.current.webkitdirectory = true;
}, []);
useEffect(() => {
checkExistenceInIndexedDB("outputImageKey").then((exist) => {
if (exist) {
console.time("start load from cache");
loadImageFromIndexedDB().then((outputImage) => {
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
container: axialRef.current,
});
rendererRef.current = fullScreenRenderer.getRenderer();
renderWindowRef.current = fullScreenRenderer.getRenderWindow();
actorRef.current = vtkVolume.newInstance();
mapperRef.current = vtkVolumeMapper.newInstance({
sampleDistance: 1.1,
});
const vtkImage = vtkITKHelper.convertItkToVtkImage(outputImage);
mapperRef.current?.setInputData(vtkImage);
mapperRef.current && actorRef.current?.setMapper(mapperRef.current);
actorRef.current && rendererRef.current?.addVolume(actorRef.current);
rendererRef.current?.resetCamera();
renderWindowRef.current?.render();
console.timeEnd("start load from cache");
const imgSource = extractAxialSliceAsImage(vtkImage, 1);
setImage(imgSource);
});
}
});
}, []);
useEffect(() => {
if (files.length > 0) {
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
container: axialRef.current,
});
rendererRef.current = fullScreenRenderer.getRenderer();
renderWindowRef.current = fullScreenRenderer.getRenderWindow();
actorRef.current = vtkVolume.newInstance();
mapperRef.current = vtkVolumeMapper.newInstance({ sampleDistance: 1.1 });
console.time("itk-wasm parse vtkVolumeImageData");
readImageDicomFileSeries(null, {
inputImages: files,
}).then((image) => {
const vtkImage = vtkITKHelper.convertItkToVtkImage(image.outputImage);
console.timeEnd("itk-wasm parse vtkVolumeImageData");
saveImageToIndexedDB(image.outputImage);
mapperRef.current?.setInputData(vtkImage);
mapperRef.current && actorRef.current?.setMapper(mapperRef.current);
actorRef.current && rendererRef.current?.addVolume(actorRef.current);
rendererRef.current?.resetCamera();
renderWindowRef.current?.render();
});
return () => {
actorRef.current = undefined;
mapperRef.current = undefined;
rendererRef.current = undefined;
renderWindowRef.current = undefined;
};
}
}, [files]);
const handleFolderUpload = async (
event: React.ChangeEvent<HTMLInputElement>
) => {
const target = event.target as HTMLInputElement;
if (!target.files) return;
const files = [...target.files].filter((file) =>
file.name.endsWith(".dcm")
);
setFiles(files);
};
return (
<>
<input
type="file"
onChange={handleFolderUpload}
ref={inputRef}
style={{ position: "fixed", zIndex: 100 }}
/>
<div className="mpr">
<div ref={axialRef} style={{ width: 500, height: 500 }}></div>
{/* <div ref={sagittalRef} style={{ width: 300, height: 300 }}></div>
<div ref={coronalRef} style={{ width: 300, height: 300 }}></div> */}
</div>
<img src={image} style={{ width: 200, height: 200 }} />
</>
);
}
export default App;

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apps/phoenix/src/app.css
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.mpr {
position: fixed;
top: 20px;
left: 50%;
transform: translateX(-50%);
display: flex;
flex-direction: column;
}

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apps/phoenix/src/assets/react.svg
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<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="35.93" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 228"><path fill="#00D8FF" d="M210.483 73.824a171.49 171.49 0 0 0-8.24-2.597c.465-1.9.893-3.777 1.273-5.621c6.238-30.281 2.16-54.676-11.769-62.708c-13.355-7.7-35.196.329-57.254 19.526a171.23 171.23 0 0 0-6.375 5.848a155.866 155.866 0 0 0-4.241-3.917C100.759 3.829 77.587-4.822 63.673 3.233C50.33 10.957 46.379 33.89 51.995 62.588a170.974 170.974 0 0 0 1.892 8.48c-3.28.932-6.445 1.924-9.474 2.98C17.309 83.498 0 98.307 0 113.668c0 15.865 18.582 31.778 46.812 41.427a145.52 145.52 0 0 0 6.921 2.165a167.467 167.467 0 0 0-2.01 9.138c-5.354 28.2-1.173 50.591 12.134 58.266c13.744 7.926 36.812-.22 59.273-19.855a145.567 145.567 0 0 0 5.342-4.923a168.064 168.064 0 0 0 6.92 6.314c21.758 18.722 43.246 26.282 56.54 18.586c13.731-7.949 18.194-32.003 12.4-61.268a145.016 145.016 0 0 0-1.535-6.842c1.62-.48 3.21-.974 4.76-1.488c29.348-9.723 48.443-25.443 48.443-41.52c0-15.417-17.868-30.326-45.517-39.844Zm-6.365 70.984c-1.4.463-2.836.91-4.3 1.345c-3.24-10.257-7.612-21.163-12.963-32.432c5.106-11 9.31-21.767 12.459-31.957c2.619.758 5.16 1.557 7.61 2.4c23.69 8.156 38.14 20.213 38.14 29.504c0 9.896-15.606 22.743-40.946 31.14Zm-10.514 20.834c2.562 12.94 2.927 24.64 1.23 33.787c-1.524 8.219-4.59 13.698-8.382 15.893c-8.067 4.67-25.32-1.4-43.927-17.412a156.726 156.726 0 0 1-6.437-5.87c7.214-7.889 14.423-17.06 21.459-27.246c12.376-1.098 24.068-2.894 34.671-5.345a134.17 134.17 0 0 1 1.386 6.193ZM87.276 214.515c-7.882 2.783-14.16 2.863-17.955.675c-8.075-4.657-11.432-22.636-6.853-46.752a156.923 156.923 0 0 1 1.869-8.499c10.486 2.32 22.093 3.988 34.498 4.994c7.084 9.967 14.501 19.128 21.976 27.15a134.668 134.668 0 0 1-4.877 4.492c-9.933 8.682-19.886 14.842-28.658 17.94ZM50.35 144.747c-12.483-4.267-22.792-9.812-29.858-15.863c-6.35-5.437-9.555-10.836-9.555-15.216c0-9.322 13.897-21.212 37.076-29.293c2.813-.98 5.757-1.905 8.812-2.773c3.204 10.42 7.406 21.315 12.477 32.332c-5.137 11.18-9.399 22.249-12.634 32.792a134.718 134.718 0 0 1-6.318-1.979Zm12.378-84.26c-4.811-24.587-1.616-43.134 6.425-47.789c8.564-4.958 27.502 2.111 47.463 19.835a144.318 144.318 0 0 1 3.841 3.545c-7.438 7.987-14.787 17.08-21.808 26.988c-12.04 1.116-23.565 2.908-34.161 5.309a160.342 160.342 0 0 1-1.76-7.887Zm110.427 27.268a347.8 347.8 0 0 0-7.785-12.803c8.168 1.033 15.994 2.404 23.343 4.08c-2.206 7.072-4.956 14.465-8.193 22.045a381.151 381.151 0 0 0-7.365-13.322Zm-45.032-43.861c5.044 5.465 10.096 11.566 15.065 18.186a322.04 322.04 0 0 0-30.257-.006c4.974-6.559 10.069-12.652 15.192-18.18ZM82.802 87.83a323.167 323.167 0 0 0-7.227 13.238c-3.184-7.553-5.909-14.98-8.134-22.152c7.304-1.634 15.093-2.97 23.209-3.984a321.524 321.524 0 0 0-7.848 12.897Zm8.081 65.352c-8.385-.936-16.291-2.203-23.593-3.793c2.26-7.3 5.045-14.885 8.298-22.6a321.187 321.187 0 0 0 7.257 13.246c2.594 4.48 5.28 8.868 8.038 13.147Zm37.542 31.03c-5.184-5.592-10.354-11.779-15.403-18.433c4.902.192 9.899.29 14.978.29c5.218 0 10.376-.117 15.453-.343c-4.985 6.774-10.018 12.97-15.028 18.486Zm52.198-57.817c3.422 7.8 6.306 15.345 8.596 22.52c-7.422 1.694-15.436 3.058-23.88 4.071a382.417 382.417 0 0 0 7.859-13.026a347.403 347.403 0 0 0 7.425-13.565Zm-16.898 8.101a358.557 358.557 0 0 1-12.281 19.815a329.4 329.4 0 0 1-23.444.823c-7.967 0-15.716-.248-23.178-.732a310.202 310.202 0 0 1-12.513-19.846h.001a307.41 307.41 0 0 1-10.923-20.627a310.278 310.278 0 0 1 10.89-20.637l-.001.001a307.318 307.318 0 0 1 12.413-19.761c7.613-.576 15.42-.876 23.31-.876H128c7.926 0 15.743.303 23.354.883a329.357 329.357 0 0 1 12.335 19.695a358.489 358.489 0 0 1 11.036 20.54a329.472 329.472 0 0 1-11 20.722Zm22.56-122.124c8.572 4.944 11.906 24.881 6.52 51.026c-.344 1.668-.73 3.367-1.15 5.09c-10.622-2.452-22.155-4.275-34.23-5.408c-7.034-10.017-14.323-19.124-21.64-27.008a160.789 160.789 0 0 1 5.888-5.4c18.9-16.447 36.564-22.941 44.612-18.3ZM128 90.808c12.625 0 22.86 10.235 22.86 22.86s-10.235 22.86-22.86 22.86s-22.86-10.235-22.86-22.86s10.235-22.86 22.86-22.86Z"></path></svg>
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38
apps/phoenix/src/extract.ts
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import vtkImageData from "@kitware/vtk.js/Common/DataModel/ImageData";
export const extractAxialSliceAsImage = (
volumeData: vtkImageData,
sliceIndex: number
): string => {
const dimensions = volumeData.getDimensions();
if (sliceIndex < 0 || sliceIndex >= dimensions[2]) {
throw new Error("Invalid slice index");
}
const scalars = volumeData.getPointData().getScalars();
const slice = scalars
.getData()
.slice(
sliceIndex * dimensions[0] * dimensions[1],
(sliceIndex + 1) * dimensions[0] * dimensions[1]
);
const canvas = document.createElement("canvas");
canvas.width = dimensions[0];
canvas.height = dimensions[1];
const context = canvas.getContext("2d")!;
const imageDataObj = context.createImageData(dimensions[0], dimensions[1]);
for (let i = 0; i < slice.length; i++) {
const value = slice[i];
imageDataObj.data[i * 4] = value;
imageDataObj.data[i * 4 + 1] = value;
imageDataObj.data[i * 4 + 2] = value;
imageDataObj.data[i * 4 + 3] = 255;
}
context.putImageData(imageDataObj, 0, 0);
return canvas.toDataURL();
};

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apps/phoenix/src/main.tsx
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import React from "react";
import ReactDOM from "react-dom/client";
import App from "./App.tsx";
ReactDOM.createRoot(document.getElementById("root")!).render(<App />);

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apps/phoenix/src/util.ts
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const dbName = "myDatabase";
const storeName = "images";
export const openDatabase = async (): Promise<IDBDatabase> => {
return new Promise((resolve, reject) => {
const request = indexedDB.open(dbName);
request.onupgradeneeded = (event: IDBVersionChangeEvent) => {
const db = request.result;
if (!db.objectStoreNames.contains(storeName)) {
db.createObjectStore(storeName);
}
};
request.onerror = (event) => reject(request.error);
request.onsuccess = (event) => resolve(request.result);
});
};
export const saveImageToIndexedDB = async (outputImage: any) => {
try {
const db = await openDatabase();
const transaction = db.transaction(storeName, "readwrite");
const store = transaction.objectStore(storeName);
const request = store.put(outputImage, "outputImageKey");
request.onerror = (event) =>
console.error("Error saving to IndexedDB", request.error);
request.onsuccess = (event) => console.log("Image saved to IndexedDB");
} catch (error) {
console.error("Error with IndexedDB operation", error);
}
};
export const loadImageFromIndexedDB = async (): Promise<any> => {
try {
const db = await openDatabase();
const transaction = db.transaction(storeName, "readonly");
const store = transaction.objectStore(storeName);
const request = store.get("outputImageKey");
return new Promise((resolve, reject) => {
request.onerror = (event) => {
console.error("Error fetching from IndexedDB", request.error);
reject(request.error);
};
request.onsuccess = (event) => {
if (request.result) {
console.log("Image loaded from IndexedDB");
resolve(request.result);
} else {
console.log("No data found in IndexedDB");
resolve(null);
}
};
});
} catch (error) {
console.error("Error with IndexedDB operation", error);
throw error;
}
};
export const checkExistenceInIndexedDB = async (
key: string
): Promise<boolean> => {
try {
const dbName = "myDatabase";
const storeName = "images";
const db = await openDatabase();
const transaction = db.transaction(storeName, "readonly");
const store = transaction.objectStore(storeName);
const request = store.get(key);
return new Promise((resolve, reject) => {
request.onerror = (event) => {
console.error("Error fetching from IndexedDB", request.error);
reject(request.error);
};
request.onsuccess = (event) => {
resolve(request.result !== undefined);
};
});
} catch (error) {
console.error("Error with IndexedDB operation", error);
throw error;
}
};

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/// <reference types="vite/client" />

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apps/phoenix/tsconfig.json
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{
"compilerOptions": {
"target": "ES2020",
"useDefineForClassFields": true,
"lib": ["ES2020", "DOM", "DOM.Iterable"],
"module": "ESNext",
"skipLibCheck": true,
/* Bundler mode */
"moduleResolution": "bundler",
"allowImportingTsExtensions": true,
"resolveJsonModule": true,
"isolatedModules": true,
"noEmit": true,
"jsx": "react-jsx",
/* Linting */
"strict": true,
"noUnusedLocals": true,
"noUnusedParameters": true,
"noFallthroughCasesInSwitch": true
},
"include": ["src"],
"references": [{ "path": "./tsconfig.node.json" }]
}

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apps/phoenix/tsconfig.node.json
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{
"compilerOptions": {
"composite": true,
"skipLibCheck": true,
"module": "ESNext",
"moduleResolution": "bundler",
"allowSyntheticDefaultImports": true
},
"include": ["vite.config.ts"]
}

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apps/phoenix/vite.config.ts
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import { defineConfig } from "vite";
import react from "@vitejs/plugin-react";
import { viteStaticCopy } from "vite-plugin-static-copy";
// https://vitejs.dev/config/
export default defineConfig({
worker: {
format: "es",
},
optimizeDeps: {
exclude: ["itk-wasm", "@itk-wasm/image-io"],
},
plugins: [
react(),
viteStaticCopy({
targets: [
{ src: "../../../dist/pipelines/*", dest: "pipelines" },
{
src: "../../../node_modules/@itk-wasm/image-io/dist/pipelines/*.{js,wasm,wasm.zst}",
dest: "pipelines",
},
],
}),
],
});

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package.json
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"name": "@tavi-universe",
"version": "1.0.0",
"scripts": {
"dev:all": "chmod 777 ./terminal.sh && ./terminal.sh",
"mock": "pnpm run --filter @tavi/mock mock",
"dev:phoenix": "pnpm run --filter @tavi/phoenix dev",
"dev:dicom": "pnpm run --filter @tavi/dicom start:dev",
"dev:logger": "pnpm run --filter @tavi/logger start:dev",
"dev:dmp-web": "pnpm run --filter @tavi/dmp-web dev",

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