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No commits in common. "b31b0c422cae5a7344e275696cfc6af132fc9446" and "5008849d8218d4d5d9528b48cac40732a2ff1b17" have entirely different histories.
b31b0c422c
...
5008849d82
13
.vscode/tasks.json
vendored
13
.vscode/tasks.json
vendored
|
|
@ -5,7 +5,6 @@
|
||||||
"label": "start-all-tasks",
|
"label": "start-all-tasks",
|
||||||
"dependsOn": [
|
"dependsOn": [
|
||||||
"build:pkg",
|
"build:pkg",
|
||||||
"phoenix-web",
|
|
||||||
"cert-web",
|
"cert-web",
|
||||||
"aorta-web",
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"aorta-web",
|
||||||
"dmp-web",
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"dmp-web",
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||||||
|
|
@ -37,18 +36,6 @@
|
||||||
"dev:logger"
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"dev:logger"
|
||||||
]
|
]
|
||||||
},
|
},
|
||||||
{
|
|
||||||
"label": "phoneix-web",
|
|
||||||
"type": "shell",
|
|
||||||
"command": "pnpm",
|
|
||||||
"args": [
|
|
||||||
"dev:phoenix"
|
|
||||||
],
|
|
||||||
"dependsOn": [
|
|
||||||
"build:pkg"
|
|
||||||
],
|
|
||||||
"problemMatcher": []
|
|
||||||
},
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|
||||||
{
|
{
|
||||||
"label": "aorta-web",
|
"label": "aorta-web",
|
||||||
"type": "shell",
|
"type": "shell",
|
||||||
|
|
|
||||||
|
|
@ -23,22 +23,16 @@
|
||||||
"js-cookie": "3.0.5",
|
"js-cookie": "3.0.5",
|
||||||
"three": "0.156.1",
|
"three": "0.156.1",
|
||||||
"path-to-regexp": "6.2.1",
|
"path-to-regexp": "6.2.1",
|
||||||
|
"cornerstone-core": "2.6.1",
|
||||||
"dicom-parser": "1.8.21",
|
"dicom-parser": "1.8.21",
|
||||||
"@msgpack/msgpack": "3.0.0-beta2",
|
"@msgpack/msgpack": "3.0.0-beta2",
|
||||||
"pako": "2.1.0",
|
"pako": "2.1.0",
|
||||||
"@kitware/vtk.js": "29.2.0",
|
"@kitware/vtk.js": "29.2.0",
|
||||||
"@cornerstonejs/dicom-image-loader": "1.41.0",
|
"@cornerstonejs/dicom-image-loader": "1.41.0",
|
||||||
|
"cornerstone-wado-image-loader": "4.13.2",
|
||||||
"@cornerstonejs/core": "1.41.0",
|
"@cornerstonejs/core": "1.41.0",
|
||||||
"dcmjs": "0.30.0",
|
"dcmjs": "0.30.0",
|
||||||
"dicomweb-client": "0.10.3",
|
"dicomweb-client": "0.10.3"
|
||||||
"@cornerstonejs/tools": "1.41.0",
|
|
||||||
"@cornerstonejs/streaming-image-volume-loader": "1.41.0",
|
|
||||||
"@cornerstonejs/calculate-suv": "1.1.0",
|
|
||||||
"vtk.js": "29.2.0",
|
|
||||||
"@itk-wasm/dicom": "5.0.2",
|
|
||||||
"itk-image-io": "^1.0.0-b.18",
|
|
||||||
"itk-mesh-io": "^1.0.0-b.18",
|
|
||||||
"web-workers": "0.9.1"
|
|
||||||
},
|
},
|
||||||
"devDependencies": {
|
"devDependencies": {
|
||||||
"@babel/core": "^7.21.8",
|
"@babel/core": "^7.21.8",
|
||||||
|
|
|
||||||
|
|
@ -1,143 +0,0 @@
|
||||||
[
|
|
||||||
"5.0.37",
|
|
||||||
[
|
|
||||||
"apple a14",
|
|
||||||
"14",
|
|
||||||
"a14 apple",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
2704,
|
|
||||||
1756,
|
|
||||||
120
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple m1",
|
|
||||||
"1",
|
|
||||||
"apple m1",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
2880,
|
|
||||||
1800,
|
|
||||||
198
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple m1 max",
|
|
||||||
"1",
|
|
||||||
"apple m1 max",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
3456,
|
|
||||||
2234,
|
|
||||||
556
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple m1 pro",
|
|
||||||
"1",
|
|
||||||
"apple m1 pro",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
3024,
|
|
||||||
1964,
|
|
||||||
342
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple m1 ultra",
|
|
||||||
"1",
|
|
||||||
"apple m1 ultra",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
5120,
|
|
||||||
2880,
|
|
||||||
437
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple m2",
|
|
||||||
"2",
|
|
||||||
"apple m2",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
2880,
|
|
||||||
1800,
|
|
||||||
60
|
|
||||||
],
|
|
||||||
[
|
|
||||||
2940,
|
|
||||||
1912,
|
|
||||||
209
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple m2 max",
|
|
||||||
"2",
|
|
||||||
"apple m2 max",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
3456,
|
|
||||||
2234,
|
|
||||||
120
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple m2 pro",
|
|
||||||
"2",
|
|
||||||
"apple m2 pro",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
3024,
|
|
||||||
1964,
|
|
||||||
120
|
|
||||||
],
|
|
||||||
[
|
|
||||||
5120,
|
|
||||||
2880,
|
|
||||||
60
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple m2 ultra",
|
|
||||||
"2",
|
|
||||||
"apple m2 ultra",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
5120,
|
|
||||||
2880,
|
|
||||||
60
|
|
||||||
]
|
|
||||||
]
|
|
||||||
],
|
|
||||||
[
|
|
||||||
"apple paravirtual device",
|
|
||||||
"",
|
|
||||||
"apple device paravirtual",
|
|
||||||
0,
|
|
||||||
[
|
|
||||||
[
|
|
||||||
1024,
|
|
||||||
768,
|
|
||||||
30
|
|
||||||
]
|
|
||||||
]
|
|
||||||
]
|
|
||||||
]
|
|
||||||
|
|
@ -31,5 +31,5 @@ export const proxyMap: TProxyMap = {
|
||||||
target: "http://localhost:5000/",
|
target: "http://localhost:5000/",
|
||||||
changeOrigin: true,
|
changeOrigin: true,
|
||||||
pathRewrite: { "^/py": "" },
|
pathRewrite: { "^/py": "" },
|
||||||
}
|
},
|
||||||
};
|
};
|
||||||
|
|
|
||||||
|
|
@ -7,7 +7,6 @@ import jsonLoader from "./loaders/json.loader";
|
||||||
import imgLoader from "./loaders/img.loader";
|
import imgLoader from "./loaders/img.loader";
|
||||||
import babelLoader from "./loaders/babel.loader";
|
import babelLoader from "./loaders/babel.loader";
|
||||||
import { cssLoader, lessLoader } from "./loaders/style.loader";
|
import { cssLoader, lessLoader } from "./loaders/style.loader";
|
||||||
import CopyWebpackPlugin from "copy-webpack-plugin";
|
|
||||||
|
|
||||||
// 加载配置文件
|
// 加载配置文件
|
||||||
const envConfig = dotenv.config({
|
const envConfig = dotenv.config({
|
||||||
|
|
@ -64,22 +63,6 @@ const baseConfig: Configuration = {
|
||||||
"process.env.BASE_ENV": JSON.stringify(process.env.BASE_ENV),
|
"process.env.BASE_ENV": JSON.stringify(process.env.BASE_ENV),
|
||||||
"process.env.NODE_ENV": JSON.stringify(process.env.NODE_ENV),
|
"process.env.NODE_ENV": JSON.stringify(process.env.NODE_ENV),
|
||||||
}),
|
}),
|
||||||
new CopyWebpackPlugin({
|
|
||||||
patterns: [
|
|
||||||
{
|
|
||||||
from: path.join(__dirname, "../", "node_modules", "web-workers"),
|
|
||||||
to: path.join(__dirname, "dist", "itk", "web-workers"),
|
|
||||||
},
|
|
||||||
{
|
|
||||||
from: path.join(__dirname, "../", "node_modules", "itk-image-io"),
|
|
||||||
to: path.join(__dirname, "dist", "itk", "image-io"),
|
|
||||||
},
|
|
||||||
{
|
|
||||||
from: path.join(__dirname, "../", "node_modules", "itk-mesh-io"),
|
|
||||||
to: path.join(__dirname, "dist", "itk", "mesh-io"),
|
|
||||||
},
|
|
||||||
],
|
|
||||||
}),
|
|
||||||
],
|
],
|
||||||
};
|
};
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -20,7 +20,7 @@ interface Configuration extends WebpackConfiguration {
|
||||||
devServer?: WebpackDevServerConfiguration;
|
devServer?: WebpackDevServerConfiguration;
|
||||||
}
|
}
|
||||||
|
|
||||||
const host = "0.0.0.0";
|
const host = "127.0.0.1";
|
||||||
const port = 9000;
|
const port = 9000;
|
||||||
|
|
||||||
// 合并公共配置,并添加开发环境配置
|
// 合并公共配置,并添加开发环境配置
|
||||||
|
|
|
||||||
|
|
@ -1,211 +0,0 @@
|
||||||
import { metaData } from "@cornerstonejs/core";
|
|
||||||
import type { InstanceMetadata } from "@cornerstonejs/calculate-suv";
|
|
||||||
|
|
||||||
export default function getPTImageIdInstanceMetadata(
|
|
||||||
imageId: string
|
|
||||||
): InstanceMetadata {
|
|
||||||
const petSequenceModule = metaData.get("petIsotopeModule", imageId);
|
|
||||||
const generalSeriesModule = metaData.get("generalSeriesModule", imageId);
|
|
||||||
const patientStudyModule = metaData.get("patientStudyModule", imageId);
|
|
||||||
|
|
||||||
const ptSeriesModule = metaData.get("petSeriesModule", imageId);
|
|
||||||
const ptImageModule = metaData.get("petImageModule", imageId);
|
|
||||||
|
|
||||||
if (!petSequenceModule) {
|
|
||||||
throw new Error("petSequenceModule metadata is required");
|
|
||||||
}
|
|
||||||
|
|
||||||
const radiopharmaceuticalInfo = petSequenceModule.radiopharmaceuticalInfo;
|
|
||||||
|
|
||||||
const { seriesDate, seriesTime, acquisitionDate, acquisitionTime } =
|
|
||||||
generalSeriesModule;
|
|
||||||
const { patientWeight } = patientStudyModule;
|
|
||||||
const { correctedImage, units, decayCorrection } = ptSeriesModule;
|
|
||||||
|
|
||||||
if (
|
|
||||||
seriesDate === undefined ||
|
|
||||||
seriesTime === undefined ||
|
|
||||||
patientWeight === undefined ||
|
|
||||||
acquisitionDate === undefined ||
|
|
||||||
acquisitionTime === undefined ||
|
|
||||||
correctedImage === undefined ||
|
|
||||||
units === undefined ||
|
|
||||||
decayCorrection === undefined ||
|
|
||||||
radiopharmaceuticalInfo.radionuclideTotalDose === undefined ||
|
|
||||||
radiopharmaceuticalInfo.radionuclideHalfLife === undefined ||
|
|
||||||
(radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime === undefined &&
|
|
||||||
seriesDate === undefined &&
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime === undefined)
|
|
||||||
//
|
|
||||||
) {
|
|
||||||
throw new Error("required metadata are missing");
|
|
||||||
}
|
|
||||||
|
|
||||||
const instanceMetadata: InstanceMetadata = {
|
|
||||||
CorrectedImage: correctedImage,
|
|
||||||
Units: units,
|
|
||||||
RadionuclideHalfLife: radiopharmaceuticalInfo.radionuclideHalfLife,
|
|
||||||
RadionuclideTotalDose: radiopharmaceuticalInfo.radionuclideTotalDose,
|
|
||||||
DecayCorrection: decayCorrection,
|
|
||||||
PatientWeight: patientWeight,
|
|
||||||
SeriesDate: seriesDate,
|
|
||||||
SeriesTime: seriesTime,
|
|
||||||
AcquisitionDate: acquisitionDate,
|
|
||||||
AcquisitionTime: acquisitionTime,
|
|
||||||
};
|
|
||||||
|
|
||||||
if (
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime &&
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== undefined &&
|
|
||||||
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime === "string"
|
|
||||||
) {
|
|
||||||
instanceMetadata.RadiopharmaceuticalStartDateTime =
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime &&
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== undefined &&
|
|
||||||
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== "string"
|
|
||||||
) {
|
|
||||||
const dateString = convertInterfaceDateToString(
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime
|
|
||||||
);
|
|
||||||
instanceMetadata.RadiopharmaceuticalStartDateTime = dateString;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
instanceMetadata.AcquisitionDate &&
|
|
||||||
instanceMetadata.AcquisitionDate !== undefined &&
|
|
||||||
typeof instanceMetadata.AcquisitionDate !== "string"
|
|
||||||
) {
|
|
||||||
const dateString = convertInterfaceDateToString(
|
|
||||||
instanceMetadata.AcquisitionDate
|
|
||||||
);
|
|
||||||
instanceMetadata.AcquisitionDate = dateString;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
instanceMetadata.SeriesDate &&
|
|
||||||
instanceMetadata.SeriesDate !== undefined &&
|
|
||||||
typeof instanceMetadata.SeriesDate !== "string"
|
|
||||||
) {
|
|
||||||
const dateString = convertInterfaceDateToString(
|
|
||||||
instanceMetadata.SeriesDate
|
|
||||||
);
|
|
||||||
instanceMetadata.SeriesDate = dateString;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime &&
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== undefined &&
|
|
||||||
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartTime === "string"
|
|
||||||
) {
|
|
||||||
instanceMetadata.RadiopharmaceuticalStartTime =
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime &&
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== undefined &&
|
|
||||||
typeof radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== "string"
|
|
||||||
) {
|
|
||||||
const timeString = convertInterfaceTimeToString(
|
|
||||||
radiopharmaceuticalInfo.radiopharmaceuticalStartTime
|
|
||||||
);
|
|
||||||
instanceMetadata.RadiopharmaceuticalStartTime = timeString;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
instanceMetadata.AcquisitionTime &&
|
|
||||||
instanceMetadata.AcquisitionTime !== undefined &&
|
|
||||||
typeof instanceMetadata.AcquisitionTime !== "string"
|
|
||||||
) {
|
|
||||||
const timeString = convertInterfaceTimeToString(
|
|
||||||
instanceMetadata.AcquisitionTime
|
|
||||||
);
|
|
||||||
instanceMetadata.AcquisitionTime = timeString;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
instanceMetadata.SeriesTime &&
|
|
||||||
instanceMetadata.SeriesTime !== undefined &&
|
|
||||||
typeof instanceMetadata.SeriesTime !== "string"
|
|
||||||
) {
|
|
||||||
const timeString = convertInterfaceTimeToString(
|
|
||||||
instanceMetadata.SeriesTime
|
|
||||||
);
|
|
||||||
instanceMetadata.SeriesTime = timeString;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
ptImageModule.frameReferenceTime &&
|
|
||||||
ptImageModule.frameReferenceTime !== undefined
|
|
||||||
) {
|
|
||||||
instanceMetadata.FrameReferenceTime = ptImageModule.frameReferenceTime;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
ptImageModule.actualFrameDuration &&
|
|
||||||
ptImageModule.actualFrameDuration !== undefined
|
|
||||||
) {
|
|
||||||
instanceMetadata.ActualFrameDuration = ptImageModule.actualFrameDuration;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
patientStudyModule.patientSex &&
|
|
||||||
patientStudyModule.patientSex !== undefined
|
|
||||||
) {
|
|
||||||
instanceMetadata.PatientSex = patientStudyModule.patientSex;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (
|
|
||||||
patientStudyModule.patientSize &&
|
|
||||||
patientStudyModule.patientSize !== undefined
|
|
||||||
) {
|
|
||||||
instanceMetadata.PatientSize = patientStudyModule.patientSize;
|
|
||||||
}
|
|
||||||
|
|
||||||
// Todo: add private tags
|
|
||||||
// if (
|
|
||||||
// dicomMetaData['70531000'] ||
|
|
||||||
// dicomMetaData['70531000'] !== undefined ||
|
|
||||||
// dicomMetaData['70531009'] ||
|
|
||||||
// dicomMetaData['70531009'] !== undefined
|
|
||||||
// ) {
|
|
||||||
// const philipsPETPrivateGroup: PhilipsPETPrivateGroup = {
|
|
||||||
// SUVScaleFactor: dicomMetaData['70531000'],
|
|
||||||
// ActivityConcentrationScaleFactor: dicomMetaData['70531009'],
|
|
||||||
// };
|
|
||||||
// instanceMetadata.PhilipsPETPrivateGroup = philipsPETPrivateGroup;
|
|
||||||
// }
|
|
||||||
|
|
||||||
// if (dicomMetaData['0009100d'] && dicomMetaData['0009100d'] !== undefined) {
|
|
||||||
// instanceMetadata.GEPrivatePostInjectionDateTime = dicomMetaData['0009100d'];
|
|
||||||
// }
|
|
||||||
|
|
||||||
return instanceMetadata;
|
|
||||||
}
|
|
||||||
|
|
||||||
function convertInterfaceTimeToString(time): string {
|
|
||||||
const hours = `${time.hours || "00"}`.padStart(2, "0");
|
|
||||||
const minutes = `${time.minutes || "00"}`.padStart(2, "0");
|
|
||||||
const seconds = `${time.seconds || "00"}`.padStart(2, "0");
|
|
||||||
|
|
||||||
const fractionalSeconds = `${time.fractionalSeconds || "000000"}`.padEnd(
|
|
||||||
6,
|
|
||||||
"0"
|
|
||||||
);
|
|
||||||
|
|
||||||
const timeString = `${hours}${minutes}${seconds}.${fractionalSeconds}`;
|
|
||||||
return timeString;
|
|
||||||
}
|
|
||||||
|
|
||||||
function convertInterfaceDateToString(date): string {
|
|
||||||
const month = `${date.month}`.padStart(2, "0");
|
|
||||||
const day = `${date.day}`.padStart(2, "0");
|
|
||||||
const dateString = `${date.year}${month}${day}`;
|
|
||||||
return dateString;
|
|
||||||
}
|
|
||||||
|
|
||||||
export { getPTImageIdInstanceMetadata };
|
|
||||||
|
|
@ -1,10 +0,0 @@
|
||||||
import { initCornerstoneDICOMImageLoader } from "./initCornerstoneDicomImageLoader";
|
|
||||||
import initVolumeLoader from "./initVolumeLoader";
|
|
||||||
import { init as csRenderInit } from "@cornerstonejs/core";
|
|
||||||
|
|
||||||
// 入口
|
|
||||||
export const initCornerstone = async () => {
|
|
||||||
initCornerstoneDICOMImageLoader();
|
|
||||||
initVolumeLoader();
|
|
||||||
await csRenderInit();
|
|
||||||
};
|
|
||||||
|
|
@ -1,17 +0,0 @@
|
||||||
import * as cornerstone from "@cornerstonejs/core";
|
|
||||||
import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider";
|
|
||||||
|
|
||||||
const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities;
|
|
||||||
|
|
||||||
export default function initProviders() {
|
|
||||||
cornerstone.metaData.addProvider(
|
|
||||||
ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider),
|
|
||||||
10000
|
|
||||||
);
|
|
||||||
cornerstone.metaData.addProvider(
|
|
||||||
calibratedPixelSpacingMetadataProvider.get.bind(
|
|
||||||
calibratedPixelSpacingMetadataProvider
|
|
||||||
),
|
|
||||||
11000
|
|
||||||
);
|
|
||||||
}
|
|
||||||
|
|
@ -1,19 +0,0 @@
|
||||||
import { volumeLoader } from "@cornerstonejs/core";
|
|
||||||
import {
|
|
||||||
cornerstoneStreamingImageVolumeLoader,
|
|
||||||
cornerstoneStreamingDynamicImageVolumeLoader,
|
|
||||||
} from "@cornerstonejs/streaming-image-volume-loader";
|
|
||||||
|
|
||||||
export default function initVolumeLoader() {
|
|
||||||
volumeLoader.registerUnknownVolumeLoader(
|
|
||||||
cornerstoneStreamingImageVolumeLoader
|
|
||||||
);
|
|
||||||
volumeLoader.registerVolumeLoader(
|
|
||||||
"cornerstoneStreamingImageVolume",
|
|
||||||
cornerstoneStreamingImageVolumeLoader
|
|
||||||
);
|
|
||||||
volumeLoader.registerVolumeLoader(
|
|
||||||
"cornerstoneStreamingDynamicImageVolume",
|
|
||||||
cornerstoneStreamingDynamicImageVolumeLoader
|
|
||||||
);
|
|
||||||
}
|
|
||||||
|
|
@ -1,17 +0,0 @@
|
||||||
import { utilities as csUtils } from "@cornerstonejs/core";
|
|
||||||
|
|
||||||
const scalingPerImageId = {};
|
|
||||||
|
|
||||||
function addInstance(imageId, scalingMetaData) {
|
|
||||||
const imageURI = csUtils.imageIdToURI(imageId);
|
|
||||||
scalingPerImageId[imageURI] = scalingMetaData;
|
|
||||||
}
|
|
||||||
|
|
||||||
function get(type, imageId) {
|
|
||||||
if (type === "scalingModule") {
|
|
||||||
const imageURI = csUtils.imageIdToURI(imageId);
|
|
||||||
return scalingPerImageId[imageURI];
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
export default { addInstance, get };
|
|
||||||
|
|
@ -1,243 +0,0 @@
|
||||||
import { useEffect, useRef } from "react";
|
|
||||||
import initDemo from "./util/initDemo.js";
|
|
||||||
import {
|
|
||||||
RenderingEngine,
|
|
||||||
Types,
|
|
||||||
Enums,
|
|
||||||
setVolumesForViewports,
|
|
||||||
volumeLoader,
|
|
||||||
getRenderingEngine,
|
|
||||||
} from "@cornerstonejs/core";
|
|
||||||
import * as cornerstoneTools from "@cornerstonejs/tools";
|
|
||||||
import createImageIdsAndCacheMetaData from "./util/createImageIdsAndCacheMetaData";
|
|
||||||
import { PublicViewportInput } from "@cornerstonejs/core/dist/types/types/IViewport.js";
|
|
||||||
import setCtTransferFunctionForVolumeActor from "./util/setCtTransferFunctionForVolumeActor";
|
|
||||||
import * as cornerstone from "@cornerstonejs/core";
|
|
||||||
|
|
||||||
const {
|
|
||||||
ToolGroupManager,
|
|
||||||
Enums: csToolsEnums,
|
|
||||||
CrosshairsTool,
|
|
||||||
StackScrollMouseWheelTool,
|
|
||||||
} = cornerstoneTools;
|
|
||||||
|
|
||||||
const { ViewportType } = Enums;
|
|
||||||
|
|
||||||
interface CrosshairMprProps {
|
|
||||||
children?: JSX.Element;
|
|
||||||
}
|
|
||||||
|
|
||||||
const viewportId1 = "CT_AXIAL";
|
|
||||||
const viewportId2 = "CT_SAGITTAL";
|
|
||||||
const viewportId3 = "CT_CORONAL";
|
|
||||||
const toolGroupId = "group";
|
|
||||||
|
|
||||||
const viewportColors = {
|
|
||||||
[viewportId1]: "rgb(200, 0, 0)",
|
|
||||||
[viewportId2]: "rgb(200, 200, 0)",
|
|
||||||
[viewportId3]: "rgb(0, 200, 0)",
|
|
||||||
};
|
|
||||||
|
|
||||||
const viewportReferenceLineControllable = [
|
|
||||||
viewportId1,
|
|
||||||
viewportId2,
|
|
||||||
viewportId3,
|
|
||||||
];
|
|
||||||
|
|
||||||
const viewportReferenceLineDraggableRotatable = [
|
|
||||||
viewportId1,
|
|
||||||
viewportId2,
|
|
||||||
viewportId3,
|
|
||||||
];
|
|
||||||
|
|
||||||
const viewportReferenceLineSlabThicknessControlsOn = [
|
|
||||||
viewportId1,
|
|
||||||
viewportId2,
|
|
||||||
viewportId3,
|
|
||||||
];
|
|
||||||
|
|
||||||
// Define a unique id for the volume
|
|
||||||
const volumeName = "CT_VOLUME_ID"; // Id of the volume less loader prefix
|
|
||||||
const volumeLoaderScheme = "cornerstoneStreamingImageVolume"; // Loader id which defines which volume loader to use
|
|
||||||
const volumeId = `${volumeLoaderScheme}:${volumeName}`; // VolumeId with loader id + volume id
|
|
||||||
|
|
||||||
function getReferenceLineColor(viewportId) {
|
|
||||||
return viewportColors[viewportId];
|
|
||||||
}
|
|
||||||
|
|
||||||
function getReferenceLineControllable(viewportId) {
|
|
||||||
const index = viewportReferenceLineControllable.indexOf(viewportId);
|
|
||||||
return index !== -1;
|
|
||||||
}
|
|
||||||
|
|
||||||
function getReferenceLineDraggableRotatable(viewportId) {
|
|
||||||
const index = viewportReferenceLineDraggableRotatable.indexOf(viewportId);
|
|
||||||
return index !== -1;
|
|
||||||
}
|
|
||||||
|
|
||||||
function getReferenceLineSlabThicknessControlsOn(viewportId) {
|
|
||||||
const index =
|
|
||||||
viewportReferenceLineSlabThicknessControlsOn.indexOf(viewportId);
|
|
||||||
return index !== -1;
|
|
||||||
}
|
|
||||||
|
|
||||||
const renderingEngineId = "myRenderingEngine";
|
|
||||||
|
|
||||||
export const CrosshairMpr = (props: CrosshairMprProps) => {
|
|
||||||
const viewportId1Ref = useRef(null);
|
|
||||||
const viewportId2Ref = useRef(null);
|
|
||||||
const viewportId3Ref = useRef(null);
|
|
||||||
const renderingEngine = useRef<RenderingEngine>();
|
|
||||||
const imageIds = useRef<string[]>();
|
|
||||||
|
|
||||||
const run = async () => {
|
|
||||||
initDemo();
|
|
||||||
|
|
||||||
// Get Cornerstone imageIds for the source data and fetch metadata into RAM
|
|
||||||
imageIds.current = await createImageIdsAndCacheMetaData({
|
|
||||||
StudyInstanceUID:
|
|
||||||
"1.2.840.113564.345049290535.9692.637552042156233117.433089",
|
|
||||||
SeriesInstanceUID:
|
|
||||||
"1.3.12.2.1107.5.1.4.76315.30000021042706150001900118311",
|
|
||||||
wadoRsRoot: "/dicom-web",
|
|
||||||
});
|
|
||||||
|
|
||||||
// Define a volume in memory
|
|
||||||
const volume = await volumeLoader.createAndCacheVolume(volumeId, {
|
|
||||||
imageIds: imageIds.current ?? [],
|
|
||||||
});
|
|
||||||
|
|
||||||
// Instantiate a rendering engine
|
|
||||||
renderingEngine.current = new RenderingEngine(renderingEngineId);
|
|
||||||
|
|
||||||
// Create the viewports
|
|
||||||
const viewportInputArray: PublicViewportInput[] = [
|
|
||||||
{
|
|
||||||
viewportId: viewportId1,
|
|
||||||
type: ViewportType.ORTHOGRAPHIC,
|
|
||||||
element: viewportId1Ref.current!,
|
|
||||||
defaultOptions: {
|
|
||||||
orientation: Enums.OrientationAxis.AXIAL,
|
|
||||||
background: [0, 0, 0],
|
|
||||||
},
|
|
||||||
},
|
|
||||||
{
|
|
||||||
viewportId: viewportId2,
|
|
||||||
type: ViewportType.ORTHOGRAPHIC,
|
|
||||||
element: viewportId2Ref.current!,
|
|
||||||
defaultOptions: {
|
|
||||||
orientation: Enums.OrientationAxis.SAGITTAL,
|
|
||||||
background: [0, 0, 0],
|
|
||||||
},
|
|
||||||
},
|
|
||||||
{
|
|
||||||
viewportId: viewportId3,
|
|
||||||
type: ViewportType.ORTHOGRAPHIC,
|
|
||||||
element: viewportId3Ref.current!,
|
|
||||||
defaultOptions: {
|
|
||||||
orientation: Enums.OrientationAxis.CORONAL,
|
|
||||||
background: [0, 0, 0],
|
|
||||||
},
|
|
||||||
},
|
|
||||||
];
|
|
||||||
|
|
||||||
renderingEngine.current.setViewports(viewportInputArray);
|
|
||||||
|
|
||||||
console.log(volume);
|
|
||||||
|
|
||||||
// Set the volume to load
|
|
||||||
volume.load();
|
|
||||||
|
|
||||||
// Set volumes on the viewports
|
|
||||||
await setVolumesForViewports(
|
|
||||||
renderingEngine.current,
|
|
||||||
[
|
|
||||||
{
|
|
||||||
volumeId,
|
|
||||||
callback: setCtTransferFunctionForVolumeActor,
|
|
||||||
},
|
|
||||||
],
|
|
||||||
[viewportId1, viewportId2, viewportId3]
|
|
||||||
);
|
|
||||||
|
|
||||||
// Define tool groups to add the segmentation display tool to
|
|
||||||
const toolGroup = ToolGroupManager.createToolGroup(toolGroupId);
|
|
||||||
|
|
||||||
if (toolGroup) {
|
|
||||||
// For the crosshairs to operate, the viewports must currently be
|
|
||||||
// added ahead of setting the tool active. This will be improved in the future.
|
|
||||||
toolGroup.addViewport(viewportId1, renderingEngineId);
|
|
||||||
toolGroup.addViewport(viewportId2, renderingEngineId);
|
|
||||||
toolGroup.addViewport(viewportId3, renderingEngineId);
|
|
||||||
|
|
||||||
// Manipulation Tools
|
|
||||||
toolGroup.addTool(StackScrollMouseWheelTool.toolName);
|
|
||||||
// Add Crosshairs tool and configure it to link the three viewports
|
|
||||||
// These viewports could use different tool groups. See the PET-CT example
|
|
||||||
// for a more complicated used case.
|
|
||||||
|
|
||||||
toolGroup.addTool(CrosshairsTool.toolName, {
|
|
||||||
getReferenceLineColor,
|
|
||||||
getReferenceLineControllable,
|
|
||||||
getReferenceLineDraggableRotatable,
|
|
||||||
getReferenceLineSlabThicknessControlsOn,
|
|
||||||
});
|
|
||||||
|
|
||||||
toolGroup.setToolActive(CrosshairsTool.toolName, {
|
|
||||||
bindings: [{ mouseButton: 1 }],
|
|
||||||
});
|
|
||||||
// As the Stack Scroll mouse wheel is a tool using the `mouseWheelCallback`
|
|
||||||
// hook instead of mouse buttons, it does not need to assign any mouse button.
|
|
||||||
toolGroup.setToolActive(StackScrollMouseWheelTool.toolName);
|
|
||||||
}
|
|
||||||
|
|
||||||
renderingEngine.current.renderViewports([
|
|
||||||
viewportId1,
|
|
||||||
viewportId2,
|
|
||||||
viewportId3,
|
|
||||||
]);
|
|
||||||
};
|
|
||||||
|
|
||||||
useEffect(() => {
|
|
||||||
cornerstoneTools.addTool(StackScrollMouseWheelTool);
|
|
||||||
cornerstoneTools.addTool(CrosshairsTool);
|
|
||||||
console.log("添加tool1");
|
|
||||||
|
|
||||||
run();
|
|
||||||
|
|
||||||
return () => {
|
|
||||||
// TODO: 是否需要写在组件，根据页面需要
|
|
||||||
console.log("卸载tool2");
|
|
||||||
cornerstoneTools.removeTool(StackScrollMouseWheelTool);
|
|
||||||
cornerstoneTools.removeTool(CrosshairsTool);
|
|
||||||
};
|
|
||||||
}, []);
|
|
||||||
|
|
||||||
useEffect(() => {
|
|
||||||
window.addEventListener("resize", () => {
|
|
||||||
renderingEngine.current?.resize();
|
|
||||||
});
|
|
||||||
}, []);
|
|
||||||
|
|
||||||
const test = () => {
|
|
||||||
// console.log(volumeLoader)
|
|
||||||
console.log(cornerstone.cache.getVolume(volumeId).getScalarData());
|
|
||||||
};
|
|
||||||
|
|
||||||
useEffect(() => {
|
|
||||||
document.addEventListener(Enums.Events.VOLUME_CACHE_VOLUME_ADDED, () => {
|
|
||||||
console.log(111);
|
|
||||||
});
|
|
||||||
}, []);
|
|
||||||
|
|
||||||
return (
|
|
||||||
<div>
|
|
||||||
<div style={{ display: "flex", gap: 20 }}>
|
|
||||||
<div style={{ width: 300, height: 300 }} ref={viewportId1Ref}></div>
|
|
||||||
<div style={{ width: 300, height: 300 }} ref={viewportId2Ref}></div>
|
|
||||||
<div style={{ width: 300, height: 300 }} ref={viewportId3Ref}></div>
|
|
||||||
</div>
|
|
||||||
<button onClick={test}>测试</button>
|
|
||||||
</div>
|
|
||||||
);
|
|
||||||
};
|
|
||||||
|
|
@ -1,65 +0,0 @@
|
||||||
import { metaData } from '@cornerstonejs/core';
|
|
||||||
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
|
|
||||||
/**
|
|
||||||
* preloads imageIds metadata in memory
|
|
||||||
**/
|
|
||||||
async function prefetchMetadataInformation(imageIdsToPrefetch) {
|
|
||||||
for (let i = 0; i < imageIdsToPrefetch.length; i++) {
|
|
||||||
await cornerstoneDICOMImageLoader.wadouri.loadImage(imageIdsToPrefetch[i])
|
|
||||||
.promise;
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
function getFrameInformation(imageId) {
|
|
||||||
if (imageId.includes('wadors:')) {
|
|
||||||
const frameIndex = imageId.indexOf('/frames/');
|
|
||||||
const imageIdFrameless =
|
|
||||||
frameIndex > 0 ? imageId.slice(0, frameIndex + 8) : imageId;
|
|
||||||
return {
|
|
||||||
frameIndex,
|
|
||||||
imageIdFrameless,
|
|
||||||
};
|
|
||||||
} else {
|
|
||||||
const frameIndex = imageId.indexOf('&frame=');
|
|
||||||
let imageIdFrameless =
|
|
||||||
frameIndex > 0 ? imageId.slice(0, frameIndex + 7) : imageId;
|
|
||||||
if (!imageIdFrameless.includes('&frame=')) {
|
|
||||||
imageIdFrameless = imageIdFrameless + '&frame=';
|
|
||||||
}
|
|
||||||
return {
|
|
||||||
frameIndex,
|
|
||||||
imageIdFrameless,
|
|
||||||
};
|
|
||||||
}
|
|
||||||
}
|
|
||||||
/**
|
|
||||||
* Receives a list of imageids possibly referring to multiframe dicom images
|
|
||||||
* and returns a list of imageid where each imageid referes to one frame.
|
|
||||||
* For each imageId representing a multiframe image with n frames,
|
|
||||||
* it will create n new imageids, one for each frame, and returns the new list of imageids
|
|
||||||
* If a particular imageid no refer to a mutiframe image data, it will be just copied into the new list
|
|
||||||
* @returns new list of imageids where each imageid represents a frame
|
|
||||||
*/
|
|
||||||
function convertMultiframeImageIds(imageIds) {
|
|
||||||
const newImageIds = [];
|
|
||||||
imageIds.forEach((imageId) => {
|
|
||||||
const { imageIdFrameless } = getFrameInformation(imageId);
|
|
||||||
const instanceMetaData = metaData.get('multiframeModule', imageId);
|
|
||||||
if (
|
|
||||||
instanceMetaData &&
|
|
||||||
instanceMetaData.NumberOfFrames &&
|
|
||||||
instanceMetaData.NumberOfFrames > 1
|
|
||||||
) {
|
|
||||||
const NumberOfFrames = instanceMetaData.NumberOfFrames;
|
|
||||||
for (let i = 0; i < NumberOfFrames; i++) {
|
|
||||||
const newImageId = imageIdFrameless + (i + 1);
|
|
||||||
newImageIds.push(newImageId);
|
|
||||||
}
|
|
||||||
} else {
|
|
||||||
newImageIds.push(imageId);
|
|
||||||
}
|
|
||||||
});
|
|
||||||
return newImageIds;
|
|
||||||
}
|
|
||||||
|
|
||||||
export { convertMultiframeImageIds, prefetchMetadataInformation };
|
|
||||||
|
|
@ -1,101 +0,0 @@
|
||||||
import { api } from 'dicomweb-client';
|
|
||||||
import dcmjs from 'dcmjs';
|
|
||||||
import { utilities } from '@cornerstonejs/core';
|
|
||||||
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
|
|
||||||
import getPixelSpacingInformation from './getPixelSpacingInformation';
|
|
||||||
import { convertMultiframeImageIds } from './convertMultiframeImageIds';
|
|
||||||
import removeInvalidTags from './removeInvalidTags';
|
|
||||||
|
|
||||||
const { DicomMetaDictionary } = dcmjs.data;
|
|
||||||
const { calibratedPixelSpacingMetadataProvider } = utilities;
|
|
||||||
|
|
||||||
/**
|
|
||||||
/**
|
|
||||||
* Uses dicomweb-client to fetch metadata of a study, cache it in cornerstone,
|
|
||||||
* and return a list of imageIds for the frames.
|
|
||||||
*
|
|
||||||
* Uses the app config to choose which study to fetch, and which
|
|
||||||
* dicom-web server to fetch it from.
|
|
||||||
*
|
|
||||||
* @returns {string[]} An array of imageIds for instances in the study.
|
|
||||||
*/
|
|
||||||
|
|
||||||
export default async function createImageIdsAndCacheMetaData({
|
|
||||||
StudyInstanceUID,
|
|
||||||
SeriesInstanceUID,
|
|
||||||
SOPInstanceUID = null,
|
|
||||||
wadoRsRoot,
|
|
||||||
client = null,
|
|
||||||
}) {
|
|
||||||
const SOP_INSTANCE_UID = '00080018';
|
|
||||||
const SERIES_INSTANCE_UID = '0020000E';
|
|
||||||
const MODALITY = '00080060';
|
|
||||||
|
|
||||||
const studySearchOptions = {
|
|
||||||
studyInstanceUID: StudyInstanceUID,
|
|
||||||
seriesInstanceUID: SeriesInstanceUID,
|
|
||||||
};
|
|
||||||
|
|
||||||
client = client || new api.DICOMwebClient({ url: wadoRsRoot });
|
|
||||||
let instances = await client.retrieveSeriesMetadata(studySearchOptions);
|
|
||||||
|
|
||||||
// if sop instance is provided we should filter the instances to only include the one we want
|
|
||||||
if (SOPInstanceUID) {
|
|
||||||
instances = instances.filter((instance) => {
|
|
||||||
return instance[SOP_INSTANCE_UID].Value[0] === SOPInstanceUID;
|
|
||||||
});
|
|
||||||
}
|
|
||||||
|
|
||||||
const modality = instances[0][MODALITY].Value[0];
|
|
||||||
let imageIds = instances.map((instanceMetaData) => {
|
|
||||||
const SeriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0];
|
|
||||||
const SOPInstanceUIDToUse =
|
|
||||||
SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0];
|
|
||||||
|
|
||||||
const prefix = 'wadors:';
|
|
||||||
|
|
||||||
const imageId =
|
|
||||||
prefix +
|
|
||||||
wadoRsRoot +
|
|
||||||
'/studies/' +
|
|
||||||
StudyInstanceUID +
|
|
||||||
'/series/' +
|
|
||||||
SeriesInstanceUID +
|
|
||||||
'/instances/' +
|
|
||||||
SOPInstanceUIDToUse +
|
|
||||||
'/frames/1';
|
|
||||||
|
|
||||||
cornerstoneDICOMImageLoader.wadors.metaDataManager.add(
|
|
||||||
imageId,
|
|
||||||
instanceMetaData
|
|
||||||
);
|
|
||||||
return imageId;
|
|
||||||
});
|
|
||||||
|
|
||||||
// if the image ids represent multiframe information, creates a new list with one image id per frame
|
|
||||||
// if not multiframe data available, just returns the same list given
|
|
||||||
imageIds = convertMultiframeImageIds(imageIds);
|
|
||||||
|
|
||||||
imageIds.forEach((imageId) => {
|
|
||||||
let instanceMetaData =
|
|
||||||
cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId);
|
|
||||||
|
|
||||||
// It was using JSON.parse(JSON.stringify(...)) before but it is 8x slower
|
|
||||||
instanceMetaData = removeInvalidTags(instanceMetaData);
|
|
||||||
|
|
||||||
if (instanceMetaData) {
|
|
||||||
// Add calibrated pixel spacing
|
|
||||||
const metadata = DicomMetaDictionary.naturalizeDataset(instanceMetaData);
|
|
||||||
const pixelSpacing = getPixelSpacingInformation(metadata);
|
|
||||||
|
|
||||||
if (pixelSpacing) {
|
|
||||||
calibratedPixelSpacingMetadataProvider.add(imageId, {
|
|
||||||
rowPixelSpacing: parseFloat(pixelSpacing[0]),
|
|
||||||
columnPixelSpacing: parseFloat(pixelSpacing[1]),
|
|
||||||
});
|
|
||||||
}
|
|
||||||
}
|
|
||||||
});
|
|
||||||
|
|
||||||
return imageIds;
|
|
||||||
}
|
|
||||||
|
|
@ -1,136 +0,0 @@
|
||||||
// See https://github.com/OHIF/Viewers/blob/94a9067fe3d291d30e25a1bda5913511388edea2/platform/core/src/utils/metadataProvider/getPixelSpacingInformation.js
|
|
||||||
|
|
||||||
export default function getPixelSpacingInformation(instance) {
|
|
||||||
// See http://gdcm.sourceforge.net/wiki/index.php/Imager_Pixel_Spacing
|
|
||||||
|
|
||||||
// TODO: Add Ultrasound region spacing
|
|
||||||
// TODO: Add manual calibration
|
|
||||||
|
|
||||||
// TODO: Use ENUMS from dcmjs
|
|
||||||
const projectionRadiographSOPClassUIDs = [
|
|
||||||
'1.2.840.10008.5.1.4.1.1.1', // CR Image Storage
|
|
||||||
'1.2.840.10008.5.1.4.1.1.1.1', // Digital X-Ray Image Storage – for Presentation
|
|
||||||
'1.2.840.10008.5.1.4.1.1.1.1.1', // Digital X-Ray Image Storage – for Processing
|
|
||||||
'1.2.840.10008.5.1.4.1.1.1.2', // Digital Mammography X-Ray Image Storage – for Presentation
|
|
||||||
'1.2.840.10008.5.1.4.1.1.1.2.1', // Digital Mammography X-Ray Image Storage – for Processing
|
|
||||||
'1.2.840.10008.5.1.4.1.1.1.3', // Digital Intra – oral X-Ray Image Storage – for Presentation
|
|
||||||
'1.2.840.10008.5.1.4.1.1.1.3.1', // Digital Intra – oral X-Ray Image Storage – for Processing
|
|
||||||
'1.2.840.10008.5.1.4.1.1.12.1', // X-Ray Angiographic Image Storage
|
|
||||||
'1.2.840.10008.5.1.4.1.1.12.1.1', // Enhanced XA Image Storage
|
|
||||||
'1.2.840.10008.5.1.4.1.1.12.2', // X-Ray Radiofluoroscopic Image Storage
|
|
||||||
'1.2.840.10008.5.1.4.1.1.12.2.1', // Enhanced XRF Image Storage
|
|
||||||
'1.2.840.10008.5.1.4.1.1.12.3', // X-Ray Angiographic Bi-plane Image Storage Retired
|
|
||||||
];
|
|
||||||
|
|
||||||
const {
|
|
||||||
PixelSpacing,
|
|
||||||
ImagerPixelSpacing,
|
|
||||||
SOPClassUID,
|
|
||||||
PixelSpacingCalibrationType,
|
|
||||||
PixelSpacingCalibrationDescription,
|
|
||||||
EstimatedRadiographicMagnificationFactor,
|
|
||||||
SequenceOfUltrasoundRegions,
|
|
||||||
} = instance;
|
|
||||||
|
|
||||||
const isProjection = projectionRadiographSOPClassUIDs.includes(SOPClassUID);
|
|
||||||
|
|
||||||
const TYPES = {
|
|
||||||
NOT_APPLICABLE: 'NOT_APPLICABLE',
|
|
||||||
UNKNOWN: 'UNKNOWN',
|
|
||||||
CALIBRATED: 'CALIBRATED',
|
|
||||||
DETECTOR: 'DETECTOR',
|
|
||||||
};
|
|
||||||
|
|
||||||
if (!isProjection) {
|
|
||||||
return PixelSpacing;
|
|
||||||
}
|
|
||||||
|
|
||||||
if (isProjection && !ImagerPixelSpacing) {
|
|
||||||
// If only Pixel Spacing is present, and this is a projection radiograph,
|
|
||||||
// PixelSpacing should be used, but the user should be informed that
|
|
||||||
// what it means is unknown
|
|
||||||
return {
|
|
||||||
PixelSpacing,
|
|
||||||
type: TYPES.UNKNOWN,
|
|
||||||
isProjection,
|
|
||||||
};
|
|
||||||
} else if (
|
|
||||||
PixelSpacing &&
|
|
||||||
ImagerPixelSpacing &&
|
|
||||||
PixelSpacing === ImagerPixelSpacing
|
|
||||||
) {
|
|
||||||
// If Imager Pixel Spacing and Pixel Spacing are present and they have the same values,
|
|
||||||
// then the user should be informed that the measurements are at the detector plane
|
|
||||||
return {
|
|
||||||
PixelSpacing,
|
|
||||||
type: TYPES.DETECTOR,
|
|
||||||
isProjection,
|
|
||||||
};
|
|
||||||
} else if (
|
|
||||||
PixelSpacing &&
|
|
||||||
ImagerPixelSpacing &&
|
|
||||||
PixelSpacing !== ImagerPixelSpacing
|
|
||||||
) {
|
|
||||||
// If Imager Pixel Spacing and Pixel Spacing are present and they have different values,
|
|
||||||
// then the user should be informed that these are "calibrated"
|
|
||||||
// (in some unknown manner if Pixel Spacing Calibration Type and/or
|
|
||||||
// Pixel Spacing Calibration Description are absent)
|
|
||||||
return {
|
|
||||||
PixelSpacing,
|
|
||||||
type: TYPES.CALIBRATED,
|
|
||||||
isProjection,
|
|
||||||
PixelSpacingCalibrationType,
|
|
||||||
PixelSpacingCalibrationDescription,
|
|
||||||
};
|
|
||||||
} else if (!PixelSpacing && ImagerPixelSpacing) {
|
|
||||||
let CorrectedImagerPixelSpacing = ImagerPixelSpacing;
|
|
||||||
if (EstimatedRadiographicMagnificationFactor) {
|
|
||||||
// Note that in IHE Mammo profile compliant displays, the value of Imager Pixel Spacing is required to be corrected by
|
|
||||||
// Estimated Radiographic Magnification Factor and the user informed of that.
|
|
||||||
// TODO: should this correction be done before all of this logic?
|
|
||||||
CorrectedImagerPixelSpacing = ImagerPixelSpacing.map(
|
|
||||||
(pixelSpacing) =>
|
|
||||||
pixelSpacing / EstimatedRadiographicMagnificationFactor
|
|
||||||
);
|
|
||||||
} else {
|
|
||||||
console.warn(
|
|
||||||
'EstimatedRadiographicMagnificationFactor was not present. Unable to correct ImagerPixelSpacing.'
|
|
||||||
);
|
|
||||||
}
|
|
||||||
|
|
||||||
return {
|
|
||||||
PixelSpacing: CorrectedImagerPixelSpacing,
|
|
||||||
isProjection,
|
|
||||||
};
|
|
||||||
} else if (
|
|
||||||
SequenceOfUltrasoundRegions &&
|
|
||||||
typeof SequenceOfUltrasoundRegions === 'object'
|
|
||||||
) {
|
|
||||||
const { PhysicalDeltaX, PhysicalDeltaY } = SequenceOfUltrasoundRegions;
|
|
||||||
const USPixelSpacing = [PhysicalDeltaX * 10, PhysicalDeltaY * 10];
|
|
||||||
|
|
||||||
return {
|
|
||||||
PixelSpacing: USPixelSpacing,
|
|
||||||
};
|
|
||||||
} else if (
|
|
||||||
SequenceOfUltrasoundRegions &&
|
|
||||||
Array.isArray(SequenceOfUltrasoundRegions) &&
|
|
||||||
SequenceOfUltrasoundRegions.length > 1
|
|
||||||
) {
|
|
||||||
console.warn(
|
|
||||||
'Sequence of Ultrasound Regions > one entry. This is not yet implemented, all measurements will be shown in pixels.'
|
|
||||||
);
|
|
||||||
} else if (isProjection === false && !ImagerPixelSpacing) {
|
|
||||||
// If only Pixel Spacing is present, and this is not a projection radiograph,
|
|
||||||
// we can stop here
|
|
||||||
return {
|
|
||||||
PixelSpacing,
|
|
||||||
type: TYPES.NOT_APPLICABLE,
|
|
||||||
isProjection,
|
|
||||||
};
|
|
||||||
}
|
|
||||||
|
|
||||||
console.warn(
|
|
||||||
'Unknown combination of PixelSpacing and ImagerPixelSpacing identified. Unable to determine spacing.'
|
|
||||||
);
|
|
||||||
}
|
|
||||||
|
|
@ -1,41 +0,0 @@
|
||||||
import dicomParser from 'dicom-parser';
|
|
||||||
import * as cornerstone from '@cornerstonejs/core';
|
|
||||||
import * as cornerstoneTools from '@cornerstonejs/tools';
|
|
||||||
import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader';
|
|
||||||
|
|
||||||
window.cornerstone = cornerstone;
|
|
||||||
window.cornerstoneTools = cornerstoneTools;
|
|
||||||
const { preferSizeOverAccuracy, useNorm16Texture } =
|
|
||||||
cornerstone.getConfiguration().rendering;
|
|
||||||
|
|
||||||
export default function initCornerstoneDICOMImageLoader() {
|
|
||||||
// TODO: 此处非常的蛇皮
|
|
||||||
cornerstone.setUseSharedArrayBuffer(false)
|
|
||||||
cornerstone.setConfiguration({
|
|
||||||
detectGPUConfig: {
|
|
||||||
benchmarksURL: "http://localhost:9000"
|
|
||||||
}
|
|
||||||
})
|
|
||||||
cornerstoneDICOMImageLoader.external.cornerstone = cornerstone;
|
|
||||||
cornerstoneDICOMImageLoader.external.dicomParser = dicomParser;
|
|
||||||
cornerstoneDICOMImageLoader.configure({
|
|
||||||
useWebWorkers: true,
|
|
||||||
decodeConfig: {
|
|
||||||
convertFloatPixelDataToInt: false,
|
|
||||||
use16BitDataType: preferSizeOverAccuracy || useNorm16Texture,
|
|
||||||
},
|
|
||||||
});
|
|
||||||
|
|
||||||
const config = {
|
|
||||||
maxWebWorkers: navigator.hardwareConcurrency ? Math.min(navigator.hardwareConcurrency, 7) : 1,
|
|
||||||
startWebWorkersOnDemand: false,
|
|
||||||
taskConfiguration: {
|
|
||||||
decodeTask: {
|
|
||||||
initializeCodecsOnStartup: false,
|
|
||||||
strict: false,
|
|
||||||
},
|
|
||||||
},
|
|
||||||
};
|
|
||||||
|
|
||||||
cornerstoneDICOMImageLoader.webWorkerManager.initialize(config);
|
|
||||||
}
|
|
||||||
|
|
@ -1,13 +0,0 @@
|
||||||
import initProviders from './initProviders.js';
|
|
||||||
import initCornerstoneDICOMImageLoader from './initCornerstoneDICOMImageLoader';
|
|
||||||
import initVolumeLoader from './initVolumeLoader';
|
|
||||||
import { init as csRenderInit } from '@cornerstonejs/core';
|
|
||||||
import { init as csToolsInit } from '@cornerstonejs/tools';
|
|
||||||
|
|
||||||
export default async function initDemo() {
|
|
||||||
initProviders();
|
|
||||||
initCornerstoneDICOMImageLoader();
|
|
||||||
initVolumeLoader();
|
|
||||||
await csRenderInit();
|
|
||||||
await csToolsInit();
|
|
||||||
}
|
|
||||||
|
|
@ -1,17 +0,0 @@
|
||||||
import * as cornerstone from '@cornerstonejs/core';
|
|
||||||
import ptScalingMetaDataProvider from './ptScalingMetaDataProvider';
|
|
||||||
|
|
||||||
const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities;
|
|
||||||
|
|
||||||
export default function initProviders() {
|
|
||||||
cornerstone.metaData.addProvider(
|
|
||||||
ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider),
|
|
||||||
10000
|
|
||||||
);
|
|
||||||
cornerstone.metaData.addProvider(
|
|
||||||
calibratedPixelSpacingMetadataProvider.get.bind(
|
|
||||||
calibratedPixelSpacingMetadataProvider
|
|
||||||
),
|
|
||||||
11000
|
|
||||||
);
|
|
||||||
}
|
|
||||||
|
|
@ -1,19 +0,0 @@
|
||||||
import { volumeLoader } from '@cornerstonejs/core';
|
|
||||||
import {
|
|
||||||
cornerstoneStreamingImageVolumeLoader,
|
|
||||||
cornerstoneStreamingDynamicImageVolumeLoader,
|
|
||||||
} from '@cornerstonejs/streaming-image-volume-loader';
|
|
||||||
|
|
||||||
export default function initVolumeLoader() {
|
|
||||||
volumeLoader.registerUnknownVolumeLoader(
|
|
||||||
cornerstoneStreamingImageVolumeLoader
|
|
||||||
);
|
|
||||||
volumeLoader.registerVolumeLoader(
|
|
||||||
'cornerstoneStreamingImageVolume',
|
|
||||||
cornerstoneStreamingImageVolumeLoader
|
|
||||||
);
|
|
||||||
volumeLoader.registerVolumeLoader(
|
|
||||||
'cornerstoneStreamingDynamicImageVolume',
|
|
||||||
cornerstoneStreamingDynamicImageVolumeLoader
|
|
||||||
);
|
|
||||||
}
|
|
||||||
|
|
@ -1,17 +0,0 @@
|
||||||
import { utilities as csUtils } from '@cornerstonejs/core';
|
|
||||||
|
|
||||||
const scalingPerImageId = {};
|
|
||||||
|
|
||||||
function addInstance(imageId, scalingMetaData) {
|
|
||||||
const imageURI = csUtils.imageIdToURI(imageId);
|
|
||||||
scalingPerImageId[imageURI] = scalingMetaData;
|
|
||||||
}
|
|
||||||
|
|
||||||
function get(type, imageId) {
|
|
||||||
if (type === 'scalingModule') {
|
|
||||||
const imageURI = csUtils.imageIdToURI(imageId);
|
|
||||||
return scalingPerImageId[imageURI];
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
export default { addInstance, get };
|
|
||||||
|
|
@ -1,33 +0,0 @@
|
||||||
/**
|
|
||||||
* Remove invalid tags from a metadata and return a new object.
|
|
||||||
*
|
|
||||||
* At this time it is only removing tags that has `null` or `undefined` values
|
|
||||||
* which is our main goal because that breaks when `naturalizeDataset(...)` is
|
|
||||||
* called.
|
|
||||||
*
|
|
||||||
* Validating the tag id using regex like /^[a-fA-F0-9]{8}$/ make it run
|
|
||||||
* +50% slower and looping through all characteres (split+every+Set or simple
|
|
||||||
* FOR+Set) double the time it takes to run. It is currently taking +12ms/1k
|
|
||||||
* images on average which can change depending on the machine.
|
|
||||||
*
|
|
||||||
* @param srcMetadata - source metadata
|
|
||||||
* @returns new metadata object without invalid tags
|
|
||||||
*/
|
|
||||||
function removeInvalidTags(srcMetadata) {
|
|
||||||
// Object.create(null) make it ~9% faster
|
|
||||||
const dstMetadata = Object.create(null);
|
|
||||||
const tagIds = Object.keys(srcMetadata);
|
|
||||||
let tagValue;
|
|
||||||
|
|
||||||
tagIds.forEach((tagId) => {
|
|
||||||
tagValue = srcMetadata[tagId];
|
|
||||||
|
|
||||||
if (tagValue !== undefined && tagValue !== null) {
|
|
||||||
dstMetadata[tagId] = tagValue;
|
|
||||||
}
|
|
||||||
});
|
|
||||||
|
|
||||||
return dstMetadata;
|
|
||||||
}
|
|
||||||
|
|
||||||
export { removeInvalidTags as default, removeInvalidTags };
|
|
||||||
|
|
@ -1,16 +0,0 @@
|
||||||
const windowWidth = 400;
|
|
||||||
const windowCenter = 40;
|
|
||||||
|
|
||||||
const lower = windowCenter - windowWidth / 2.0;
|
|
||||||
const upper = windowCenter + windowWidth / 2.0;
|
|
||||||
|
|
||||||
const ctVoiRange = { lower, upper };
|
|
||||||
|
|
||||||
export default function setCtTransferFunctionForVolumeActor({ volumeActor }) {
|
|
||||||
volumeActor
|
|
||||||
.getProperty()
|
|
||||||
.getRGBTransferFunction(0)
|
|
||||||
.setMappingRange(lower, upper);
|
|
||||||
}
|
|
||||||
|
|
||||||
export { ctVoiRange };
|
|
||||||
|
|
@ -1,87 +0,0 @@
|
||||||
import macro from "@kitware/vtk.js/macro";
|
|
||||||
import Helper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
|
|
||||||
|
|
||||||
|
|
||||||
const { convertItkToVtkImage } = Helper;
|
|
||||||
|
|
||||||
import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
|
|
||||||
|
|
||||||
function getArrayName(filename) {
|
|
||||||
const idx = filename.lastIndexOf(".");
|
|
||||||
const name = idx > -1 ? filename.substring(0, idx) : filename;
|
|
||||||
return `Scalars ${name}`;
|
|
||||||
}
|
|
||||||
|
|
||||||
// ----------------------------------------------------------------------------
|
|
||||||
// vtkITKDicomImageReader methods
|
|
||||||
// ----------------------------------------------------------------------------
|
|
||||||
|
|
||||||
function vtkITKDicomImageReader(publicAPI, model) {
|
|
||||||
// Set our className
|
|
||||||
model.classHierarchy.push("vtkITKDicomImageReader");
|
|
||||||
|
|
||||||
// Returns a promise to signal when image is ready
|
|
||||||
publicAPI.readFileSeries = (files, fileName) => {
|
|
||||||
if (!files || !files.length || files === model.files) {
|
|
||||||
return Promise.resolve();
|
|
||||||
}
|
|
||||||
|
|
||||||
if (fileName && fileName !== model.fileName) {
|
|
||||||
model.fileName = fileName;
|
|
||||||
}
|
|
||||||
|
|
||||||
model.files = files;
|
|
||||||
|
|
||||||
return readImageDICOMFileSeries(null, files)
|
|
||||||
.then(({ webWorker, image }) => {
|
|
||||||
webWorker.terminate();
|
|
||||||
return image;
|
|
||||||
})
|
|
||||||
.then(itkImage => {
|
|
||||||
const imageData = convertItkToVtkImage(itkImage, {
|
|
||||||
scalarArrayName: model.arrayName || getArrayName(model.fileName)
|
|
||||||
});
|
|
||||||
model.output[0] = imageData;
|
|
||||||
|
|
||||||
publicAPI.modified();
|
|
||||||
|
|
||||||
return imageData;
|
|
||||||
});
|
|
||||||
};
|
|
||||||
|
|
||||||
publicAPI.requestData = (/* inData, outData */) => {
|
|
||||||
publicAPI.readFileSeries(model.files, model.fileName);
|
|
||||||
};
|
|
||||||
}
|
|
||||||
|
|
||||||
// ----------------------------------------------------------------------------
|
|
||||||
// Object factory
|
|
||||||
// ----------------------------------------------------------------------------
|
|
||||||
|
|
||||||
const DEFAULT_VALUES = {
|
|
||||||
fileName: "",
|
|
||||||
// If null/undefined a unique array will be generated
|
|
||||||
arrayName: null
|
|
||||||
};
|
|
||||||
|
|
||||||
// ----------------------------------------------------------------------------
|
|
||||||
|
|
||||||
export function extend(publicAPI, model, initialValues = {}) {
|
|
||||||
Object.assign(model, DEFAULT_VALUES, initialValues);
|
|
||||||
|
|
||||||
// Build VTK API
|
|
||||||
macro.obj(publicAPI, model);
|
|
||||||
macro.algo(publicAPI, model, 0, 1);
|
|
||||||
macro.setGet(publicAPI, model, ["fileName", "arrayName"]);
|
|
||||||
|
|
||||||
// vtkITKDicomImageReader methods
|
|
||||||
vtkITKDicomImageReader(publicAPI, model);
|
|
||||||
}
|
|
||||||
|
|
||||||
// ----------------------------------------------------------------------------
|
|
||||||
|
|
||||||
export const newInstance = macro.newInstance(extend, "vtkITKDicomImageReader");
|
|
||||||
|
|
||||||
// ----------------------------------------------------------------------------
|
|
||||||
|
|
||||||
export default { newInstance, extend };
|
|
||||||
|
|
@ -1,74 +0,0 @@
|
||||||
import { useRef, useState } from "react";
|
|
||||||
import dicomParser from "dicom-parser";
|
|
||||||
import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
|
|
||||||
import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
|
|
||||||
import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
|
|
||||||
|
|
||||||
import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
|
|
||||||
|
|
||||||
// import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
|
|
||||||
|
|
||||||
import { readImageDicomFileSeries } from "@itk-wasm/dicom";
|
|
||||||
// import { readImageDicomFileSeries } from 'itk-wasm'
|
|
||||||
|
|
||||||
// import { readImageDICOMFileSeries } from "itk-wasm";
|
|
||||||
|
|
||||||
interface LocalMprProps {
|
|
||||||
children?: JSX.Element;
|
|
||||||
}
|
|
||||||
|
|
||||||
export const LocalMpr = (props: LocalMprProps) => {
|
|
||||||
const containerRef = useRef(null);
|
|
||||||
const handleFolderUpload = async (
|
|
||||||
event: React.ChangeEvent<HTMLInputElement>
|
|
||||||
) => {
|
|
||||||
if (event.target.files) {
|
|
||||||
const files = event.target.files;
|
|
||||||
if (!files.length) {
|
|
||||||
return;
|
|
||||||
}
|
|
||||||
|
|
||||||
const fileList: File[] = [];
|
|
||||||
for (let i = 0; i < files.length; i++) {
|
|
||||||
fileList.push(files[i]);
|
|
||||||
}
|
|
||||||
|
|
||||||
const image = await readImageDicomFileSeries(null, {
|
|
||||||
inputImages: fileList,
|
|
||||||
});
|
|
||||||
const vtkImage = vtkITKHelper.convertItkToVtkImage(image);
|
|
||||||
const volume = vtkVolume.newInstance();
|
|
||||||
const mapper = vtkVolumeMapper.newInstance();
|
|
||||||
volume.setMapper(mapper);
|
|
||||||
mapper.setInputData(vtkImage);
|
|
||||||
|
|
||||||
// 创建 vtk 的全屏渲染窗口
|
|
||||||
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
|
|
||||||
background: [0, 0, 0],
|
|
||||||
container: containerRef.current!,
|
|
||||||
});
|
|
||||||
const renderer = fullScreenRenderer.getRenderer();
|
|
||||||
const renderWindow = fullScreenRenderer.getRenderWindow();
|
|
||||||
|
|
||||||
// 将 volume 添加到渲染器
|
|
||||||
renderer.addVolume(volume);
|
|
||||||
// 设置相机位置等
|
|
||||||
renderer.resetCamera();
|
|
||||||
renderWindow.render();
|
|
||||||
}
|
|
||||||
};
|
|
||||||
|
|
||||||
return (
|
|
||||||
<div>
|
|
||||||
<div>
|
|
||||||
<input
|
|
||||||
type="file"
|
|
||||||
webkitdirectory="true"
|
|
||||||
directory=""
|
|
||||||
onChange={handleFolderUpload}
|
|
||||||
/>
|
|
||||||
</div>
|
|
||||||
<div style={{ width: 400, height: 400 }} ref={containerRef}></div>
|
|
||||||
</div>
|
|
||||||
);
|
|
||||||
};
|
|
||||||
|
|
@ -5,9 +5,6 @@ import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
|
||||||
import { getPixelSpacingInformation } from "./getPixelSpacingInformation";
|
import { getPixelSpacingInformation } from "./getPixelSpacingInformation";
|
||||||
import { convertMultiframeImageIds } from "./convertMultiframeImageIds";
|
import { convertMultiframeImageIds } from "./convertMultiframeImageIds";
|
||||||
import { removeInvalidTags } from "./removeInvalidTags";
|
import { removeInvalidTags } from "./removeInvalidTags";
|
||||||
import getPTImageIdInstanceMetadata from "./getPTImageIdInstanceMetadata";
|
|
||||||
import { calculateSUVScalingFactors } from "@cornerstonejs/calculate-suv";
|
|
||||||
import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider";
|
|
||||||
|
|
||||||
const { DicomMetaDictionary } = dcmjs.data;
|
const { DicomMetaDictionary } = dcmjs.data;
|
||||||
const { calibratedPixelSpacingMetadataProvider } = utilities;
|
const { calibratedPixelSpacingMetadataProvider } = utilities;
|
||||||
|
|
@ -47,22 +44,11 @@ export const createImageIdsAndCacheMetaData = async (
|
||||||
console.log("modality", modality);
|
console.log("modality", modality);
|
||||||
|
|
||||||
let imageIds = instances.map((instanceMetaData: any) => {
|
let imageIds = instances.map((instanceMetaData: any) => {
|
||||||
const SeriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0];
|
const seriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0];
|
||||||
const SOPInstanceUIDToUse =
|
const sopInstanceUIDToUse =
|
||||||
options.SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0];
|
options.SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0];
|
||||||
|
|
||||||
const prefix = "wadors:";
|
const imageId = `wadors:${options.wadoRsRoot}/studies/${options.StudyInstanceUID}/series/${seriesInstanceUID}/instances/${sopInstanceUIDToUse}/frames/1`;
|
||||||
|
|
||||||
const imageId =
|
|
||||||
prefix +
|
|
||||||
options.wadoRsRoot +
|
|
||||||
"/studies/" +
|
|
||||||
options.StudyInstanceUID +
|
|
||||||
"/series/" +
|
|
||||||
SeriesInstanceUID +
|
|
||||||
"/instances/" +
|
|
||||||
SOPInstanceUIDToUse +
|
|
||||||
"/frames/1";
|
|
||||||
|
|
||||||
cornerstoneDICOMImageLoader.wadors.metaDataManager.add(
|
cornerstoneDICOMImageLoader.wadors.metaDataManager.add(
|
||||||
imageId,
|
imageId,
|
||||||
|
|
@ -76,7 +62,6 @@ export const createImageIdsAndCacheMetaData = async (
|
||||||
imageIds.forEach((imageId) => {
|
imageIds.forEach((imageId) => {
|
||||||
let instanceMetaData =
|
let instanceMetaData =
|
||||||
cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId);
|
cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId);
|
||||||
|
|
||||||
instanceMetaData = removeInvalidTags(instanceMetaData);
|
instanceMetaData = removeInvalidTags(instanceMetaData);
|
||||||
|
|
||||||
if (instanceMetaData) {
|
if (instanceMetaData) {
|
||||||
|
|
@ -96,44 +81,8 @@ export const createImageIdsAndCacheMetaData = async (
|
||||||
}
|
}
|
||||||
});
|
});
|
||||||
|
|
||||||
if (modality === "PT") {
|
|
||||||
const InstanceMetadataArray: any = [];
|
|
||||||
imageIds.forEach((imageId) => {
|
|
||||||
const instanceMetadata = getPTImageIdInstanceMetadata(imageId);
|
|
||||||
|
|
||||||
// TODO: Temporary fix because static-wado is producing a string, not an array of values
|
|
||||||
// (or maybe dcmjs isn't parsing it correctly?)
|
|
||||||
// It's showing up like 'DECY\\ATTN\\SCAT\\DTIM\\RAN\\RADL\\DCAL\\SLSENS\\NORM'
|
|
||||||
// but calculate-suv expects ['DECY', 'ATTN', ...]
|
|
||||||
if (typeof instanceMetadata.CorrectedImage === "string") {
|
|
||||||
instanceMetadata.CorrectedImage =
|
|
||||||
instanceMetadata.CorrectedImage.split("\\");
|
|
||||||
}
|
|
||||||
|
|
||||||
if (instanceMetadata) {
|
|
||||||
InstanceMetadataArray.push(instanceMetadata);
|
|
||||||
}
|
|
||||||
});
|
|
||||||
if (InstanceMetadataArray.length) {
|
|
||||||
try {
|
|
||||||
const suvScalingFactors = calculateSUVScalingFactors(
|
|
||||||
InstanceMetadataArray
|
|
||||||
);
|
|
||||||
InstanceMetadataArray.forEach((instanceMetadata, index) => {
|
|
||||||
ptScalingMetaDataProvider.addInstance(
|
|
||||||
imageIds[index],
|
|
||||||
suvScalingFactors[index]
|
|
||||||
);
|
|
||||||
});
|
|
||||||
} catch (error) {
|
|
||||||
console.log(error);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
return imageIds;
|
return imageIds;
|
||||||
} catch (error) {
|
} catch (error) {
|
||||||
console.log(error);
|
|
||||||
throw new Error("PACS 中数据不存在");
|
throw new Error("PACS 中数据不存在");
|
||||||
}
|
}
|
||||||
};
|
};
|
||||||
|
|
@ -1,13 +1,13 @@
|
||||||
import { useEffect, useRef } from "react";
|
import { useEffect, useRef } from "react";
|
||||||
import { Enums, RenderingEngine, cache } from "@cornerstonejs/core";
|
import { Enums, RenderingEngine, cache } from "@cornerstonejs/core";
|
||||||
import { initCornerstone } from "../CornerstoneDicomLoader/init";
|
import { initCornerstone } from "./initCornerstoneDicomImageLoader";
|
||||||
import { createImageIdsAndCacheMetaData } from "../CornerstoneDicomLoader/createImageIdsAndCacheMetaData";
|
import { createImageIdsAndCacheMetaData } from "./createImageIdsAndCacheMetaData";
|
||||||
import {
|
import {
|
||||||
IStackViewport,
|
IStackViewport,
|
||||||
PublicViewportInput,
|
PublicViewportInput,
|
||||||
} from "@cornerstonejs/core/dist/types/types";
|
} from "@cornerstonejs/core/dist/types/types";
|
||||||
|
|
||||||
interface StackViewerProps {
|
interface VolumeViewerProps {
|
||||||
children?: JSX.Element;
|
children?: JSX.Element;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
@ -21,7 +21,7 @@ const StudyInstanceUID =
|
||||||
const SeriesInstanceUID =
|
const SeriesInstanceUID =
|
||||||
"1.3.12.2.1107.5.1.4.76315.30000021042706150001900118311";
|
"1.3.12.2.1107.5.1.4.76315.30000021042706150001900118311";
|
||||||
|
|
||||||
export const StackViewer = (props: StackViewerProps) => {
|
export const VolumeViewer = (props: VolumeViewerProps) => {
|
||||||
const dicomRef = useRef(null);
|
const dicomRef = useRef(null);
|
||||||
|
|
||||||
const run = async () => {
|
const run = async () => {
|
||||||
|
|
@ -1,20 +1,12 @@
|
||||||
|
import { init as csRenderInit } from "@cornerstonejs/core";
|
||||||
import dicomParser from "dicom-parser";
|
import dicomParser from "dicom-parser";
|
||||||
import * as cornerstone from "@cornerstonejs/core";
|
import * as cornerstone from "@cornerstonejs/core";
|
||||||
import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
|
import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
|
||||||
|
|
||||||
window.cornerstone = cornerstone;
|
const initCornerstoneDICOMImageLoader = () => {
|
||||||
|
|
||||||
export const initCornerstoneDICOMImageLoader = () => {
|
|
||||||
const { preferSizeOverAccuracy, useNorm16Texture } =
|
const { preferSizeOverAccuracy, useNorm16Texture } =
|
||||||
cornerstone.getConfiguration().rendering;
|
cornerstone.getConfiguration().rendering;
|
||||||
|
|
||||||
cornerstone.setConfiguration({
|
|
||||||
detectGPUConfig: {
|
|
||||||
benchmarksURL: "http://localhost:9000",
|
|
||||||
},
|
|
||||||
rendering: cornerstone.getConfiguration().rendering,
|
|
||||||
});
|
|
||||||
|
|
||||||
cornerstoneDICOMImageLoader.external.cornerstone = cornerstone;
|
cornerstoneDICOMImageLoader.external.cornerstone = cornerstone;
|
||||||
cornerstoneDICOMImageLoader.external.dicomParser = dicomParser;
|
cornerstoneDICOMImageLoader.external.dicomParser = dicomParser;
|
||||||
cornerstoneDICOMImageLoader.configure({
|
cornerstoneDICOMImageLoader.configure({
|
||||||
|
|
@ -25,14 +17,8 @@ export const initCornerstoneDICOMImageLoader = () => {
|
||||||
},
|
},
|
||||||
});
|
});
|
||||||
|
|
||||||
let maxWebWorkers = 1;
|
|
||||||
|
|
||||||
if (navigator.hardwareConcurrency) {
|
|
||||||
maxWebWorkers = Math.min(navigator.hardwareConcurrency, 7);
|
|
||||||
}
|
|
||||||
|
|
||||||
const config = {
|
const config = {
|
||||||
maxWebWorkers,
|
maxWebWorkers: navigator.hardwareConcurrency ?? 7,
|
||||||
startWebWorkersOnDemand: false,
|
startWebWorkersOnDemand: false,
|
||||||
taskConfiguration: {
|
taskConfiguration: {
|
||||||
decodeTask: {
|
decodeTask: {
|
||||||
|
|
@ -44,3 +30,8 @@ export const initCornerstoneDICOMImageLoader = () => {
|
||||||
|
|
||||||
cornerstoneDICOMImageLoader.webWorkerManager.initialize(config);
|
cornerstoneDICOMImageLoader.webWorkerManager.initialize(config);
|
||||||
};
|
};
|
||||||
|
|
||||||
|
export const initCornerstone = async () => {
|
||||||
|
initCornerstoneDICOMImageLoader();
|
||||||
|
await csRenderInit();
|
||||||
|
};
|
||||||
|
|
@ -1,8 +1,6 @@
|
||||||
import { CrosshairMpr } from "./Crosshair";
|
|
||||||
import { DiffViewer } from "./DiffViewer";
|
import { DiffViewer } from "./DiffViewer";
|
||||||
import { LocalMpr } from "./LocalMpr";
|
|
||||||
import { MprViewer } from "./MprViewer";
|
import { MprViewer } from "./MprViewer";
|
||||||
import { StackViewer } from "./StackViewer";
|
import { VolumeViewer } from "./VolumeViewer";
|
||||||
|
|
||||||
interface RootViewerProps {
|
interface RootViewerProps {
|
||||||
children?: JSX.Element;
|
children?: JSX.Element;
|
||||||
|
|
@ -11,9 +9,7 @@ interface RootViewerProps {
|
||||||
export const RootViewer = (props: RootViewerProps) => {
|
export const RootViewer = (props: RootViewerProps) => {
|
||||||
return (
|
return (
|
||||||
<div>
|
<div>
|
||||||
<LocalMpr />
|
<VolumeViewer />
|
||||||
{/* <CrosshairMpr /> */}
|
|
||||||
{/* <StackViewer /> */}
|
|
||||||
</div>
|
</div>
|
||||||
);
|
);
|
||||||
};
|
};
|
||||||
|
|
|
||||||
|
|
@ -1,18 +0,0 @@
|
||||||
module.exports = {
|
|
||||||
root: true,
|
|
||||||
env: { browser: true, es2020: true },
|
|
||||||
extends: [
|
|
||||||
'eslint:recommended',
|
|
||||||
'plugin:@typescript-eslint/recommended',
|
|
||||||
'plugin:react-hooks/recommended',
|
|
||||||
],
|
|
||||||
ignorePatterns: ['dist', '.eslintrc.cjs'],
|
|
||||||
parser: '@typescript-eslint/parser',
|
|
||||||
plugins: ['react-refresh'],
|
|
||||||
rules: {
|
|
||||||
'react-refresh/only-export-components': [
|
|
||||||
'warn',
|
|
||||||
{ allowConstantExport: true },
|
|
||||||
],
|
|
||||||
},
|
|
||||||
}
|
|
||||||
24
apps/phoenix/.gitignore
vendored
24
apps/phoenix/.gitignore
vendored
|
|
@ -1,24 +0,0 @@
|
||||||
# Logs
|
|
||||||
logs
|
|
||||||
*.log
|
|
||||||
npm-debug.log*
|
|
||||||
yarn-debug.log*
|
|
||||||
yarn-error.log*
|
|
||||||
pnpm-debug.log*
|
|
||||||
lerna-debug.log*
|
|
||||||
|
|
||||||
node_modules
|
|
||||||
dist
|
|
||||||
dist-ssr
|
|
||||||
*.local
|
|
||||||
|
|
||||||
# Editor directories and files
|
|
||||||
.vscode/*
|
|
||||||
!.vscode/extensions.json
|
|
||||||
.idea
|
|
||||||
.DS_Store
|
|
||||||
*.suo
|
|
||||||
*.ntvs*
|
|
||||||
*.njsproj
|
|
||||||
*.sln
|
|
||||||
*.sw?
|
|
||||||
|
|
@ -1,30 +0,0 @@
|
||||||
# React + TypeScript + Vite
|
|
||||||
|
|
||||||
This template provides a minimal setup to get React working in Vite with HMR and some ESLint rules.
|
|
||||||
|
|
||||||
Currently, two official plugins are available:
|
|
||||||
|
|
||||||
- [@vitejs/plugin-react](https://github.com/vitejs/vite-plugin-react/blob/main/packages/plugin-react/README.md) uses [Babel](https://babeljs.io/) for Fast Refresh
|
|
||||||
- [@vitejs/plugin-react-swc](https://github.com/vitejs/vite-plugin-react-swc) uses [SWC](https://swc.rs/) for Fast Refresh
|
|
||||||
|
|
||||||
## Expanding the ESLint configuration
|
|
||||||
|
|
||||||
If you are developing a production application, we recommend updating the configuration to enable type aware lint rules:
|
|
||||||
|
|
||||||
- Configure the top-level `parserOptions` property like this:
|
|
||||||
|
|
||||||
```js
|
|
||||||
export default {
|
|
||||||
// other rules...
|
|
||||||
parserOptions: {
|
|
||||||
ecmaVersion: 'latest',
|
|
||||||
sourceType: 'module',
|
|
||||||
project: ['./tsconfig.json', './tsconfig.node.json'],
|
|
||||||
tsconfigRootDir: __dirname,
|
|
||||||
},
|
|
||||||
}
|
|
||||||
```
|
|
||||||
|
|
||||||
- Replace `plugin:@typescript-eslint/recommended` to `plugin:@typescript-eslint/recommended-type-checked` or `plugin:@typescript-eslint/strict-type-checked`
|
|
||||||
- Optionally add `plugin:@typescript-eslint/stylistic-type-checked`
|
|
||||||
- Install [eslint-plugin-react](https://github.com/jsx-eslint/eslint-plugin-react) and add `plugin:react/recommended` & `plugin:react/jsx-runtime` to the `extends` list
|
|
||||||
|
|
@ -1,13 +0,0 @@
|
||||||
<!doctype html>
|
|
||||||
<html lang="en">
|
|
||||||
<head>
|
|
||||||
<meta charset="UTF-8" />
|
|
||||||
<link rel="icon" type="image/svg+xml" href="/vite.svg" />
|
|
||||||
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
|
|
||||||
<title>Vite + React + TS</title>
|
|
||||||
</head>
|
|
||||||
<body>
|
|
||||||
<div id="root"></div>
|
|
||||||
<script type="module" src="/src/main.tsx"></script>
|
|
||||||
</body>
|
|
||||||
</html>
|
|
||||||
|
|
@ -1,33 +0,0 @@
|
||||||
{
|
|
||||||
"name": "@tavi/phoenix",
|
|
||||||
"private": true,
|
|
||||||
"version": "0.0.0",
|
|
||||||
"type": "module",
|
|
||||||
"scripts": {
|
|
||||||
"dev": "vite",
|
|
||||||
"build": "tsc && vite build",
|
|
||||||
"lint": "eslint . --ext ts,tsx --report-unused-disable-directives --max-warnings 0",
|
|
||||||
"preview": "vite preview"
|
|
||||||
},
|
|
||||||
"dependencies": {
|
|
||||||
"react": "^18.2.0",
|
|
||||||
"react-dom": "^18.2.0",
|
|
||||||
"@kitware/vtk.js": "29.3.0",
|
|
||||||
"@itk-wasm/image-io": "0.5.2",
|
|
||||||
"@itk-wasm/mesh-io": "0.2.2",
|
|
||||||
"@itk-wasm/dicom": "5.0.2"
|
|
||||||
},
|
|
||||||
"devDependencies": {
|
|
||||||
"@types/react": "^18.2.43",
|
|
||||||
"@types/react-dom": "^18.2.17",
|
|
||||||
"@typescript-eslint/eslint-plugin": "^6.14.0",
|
|
||||||
"@typescript-eslint/parser": "^6.14.0",
|
|
||||||
"@vitejs/plugin-react": "^4.2.1",
|
|
||||||
"eslint": "^8.55.0",
|
|
||||||
"eslint-plugin-react-hooks": "^4.6.0",
|
|
||||||
"eslint-plugin-react-refresh": "^0.4.5",
|
|
||||||
"typescript": "^5.2.2",
|
|
||||||
"vite": "^5.0.8",
|
|
||||||
"vite-plugin-static-copy": "1.0.0"
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
@ -1 +0,0 @@
|
||||||
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="31.88" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 257"><defs><linearGradient id="IconifyId1813088fe1fbc01fb466" x1="-.828%" x2="57.636%" y1="7.652%" y2="78.411%"><stop offset="0%" stop-color="#41D1FF"></stop><stop offset="100%" stop-color="#BD34FE"></stop></linearGradient><linearGradient id="IconifyId1813088fe1fbc01fb467" x1="43.376%" x2="50.316%" y1="2.242%" y2="89.03%"><stop offset="0%" stop-color="#FFEA83"></stop><stop offset="8.333%" stop-color="#FFDD35"></stop><stop offset="100%" stop-color="#FFA800"></stop></linearGradient></defs><path fill="url(#IconifyId1813088fe1fbc01fb466)" d="M255.153 37.938L134.897 252.976c-2.483 4.44-8.862 4.466-11.382.048L.875 37.958c-2.746-4.814 1.371-10.646 6.827-9.67l120.385 21.517a6.537 6.537 0 0 0 2.322-.004l117.867-21.483c5.438-.991 9.574 4.796 6.877 9.62Z"></path><path fill="url(#IconifyId1813088fe1fbc01fb467)" d="M185.432.063L96.44 17.501a3.268 3.268 0 0 0-2.634 3.014l-5.474 92.456a3.268 3.268 0 0 0 3.997 3.378l24.777-5.718c2.318-.535 4.413 1.507 3.936 3.838l-7.361 36.047c-.495 2.426 1.782 4.5 4.151 3.78l15.304-4.649c2.372-.72 4.652 1.36 4.15 3.788l-11.698 56.621c-.732 3.542 3.979 5.473 5.943 2.437l1.313-2.028l72.516-144.72c1.215-2.423-.88-5.186-3.54-4.672l-25.505 4.922c-2.396.462-4.435-1.77-3.759-4.114l16.646-57.705c.677-2.35-1.37-4.583-3.769-4.113Z"></path></svg>
|
|
||||||
|
Before Width: | Height: | Size: 1.5 KiB |
|
|
@ -1,128 +0,0 @@
|
||||||
import { useEffect, useRef, useState } from "react";
|
|
||||||
import { readImageDicomFileSeries } from "@itk-wasm/dicom";
|
|
||||||
import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
|
|
||||||
import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
|
|
||||||
import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
|
|
||||||
import "@kitware/vtk.js/Rendering/Profiles/Volume";
|
|
||||||
import vtkRenderer from "@kitware/vtk.js/Rendering/Core/Renderer";
|
|
||||||
import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
|
|
||||||
import vtkRenderWindow from "@kitware/vtk.js/Rendering/Core/RenderWindow";
|
|
||||||
|
|
||||||
import "./app.css";
|
|
||||||
import {
|
|
||||||
checkExistenceInIndexedDB,
|
|
||||||
loadImageFromIndexedDB,
|
|
||||||
saveImageToIndexedDB,
|
|
||||||
} from "./util";
|
|
||||||
import { extractAxialSliceAsImage } from "./extract";
|
|
||||||
|
|
||||||
function App() {
|
|
||||||
const [files, setFiles] = useState<File[]>([]);
|
|
||||||
const inputRef = useRef<HTMLInputElement>(null);
|
|
||||||
|
|
||||||
const axialRef = useRef<HTMLElement | null>(null);
|
|
||||||
const sagittalRef = useRef<HTMLElement | null>(null);
|
|
||||||
const coronalRef = useRef<HTMLElement | null>(null);
|
|
||||||
|
|
||||||
const rendererRef = useRef<vtkRenderer>();
|
|
||||||
const mapperRef = useRef<vtkVolumeMapper>();
|
|
||||||
const actorRef = useRef<vtkVolume>();
|
|
||||||
const renderWindowRef = useRef<vtkRenderWindow>();
|
|
||||||
|
|
||||||
const [image, setImage] = useState();
|
|
||||||
|
|
||||||
useEffect(() => {
|
|
||||||
if (inputRef.current) inputRef.current.webkitdirectory = true;
|
|
||||||
}, []);
|
|
||||||
|
|
||||||
useEffect(() => {
|
|
||||||
checkExistenceInIndexedDB("outputImageKey").then((exist) => {
|
|
||||||
if (exist) {
|
|
||||||
console.time("start load from cache");
|
|
||||||
loadImageFromIndexedDB().then((outputImage) => {
|
|
||||||
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
|
|
||||||
container: axialRef.current,
|
|
||||||
});
|
|
||||||
rendererRef.current = fullScreenRenderer.getRenderer();
|
|
||||||
renderWindowRef.current = fullScreenRenderer.getRenderWindow();
|
|
||||||
actorRef.current = vtkVolume.newInstance();
|
|
||||||
mapperRef.current = vtkVolumeMapper.newInstance({
|
|
||||||
sampleDistance: 1.1,
|
|
||||||
});
|
|
||||||
const vtkImage = vtkITKHelper.convertItkToVtkImage(outputImage);
|
|
||||||
mapperRef.current?.setInputData(vtkImage);
|
|
||||||
mapperRef.current && actorRef.current?.setMapper(mapperRef.current);
|
|
||||||
actorRef.current && rendererRef.current?.addVolume(actorRef.current);
|
|
||||||
rendererRef.current?.resetCamera();
|
|
||||||
renderWindowRef.current?.render();
|
|
||||||
console.timeEnd("start load from cache");
|
|
||||||
|
|
||||||
const imgSource = extractAxialSliceAsImage(vtkImage, 1);
|
|
||||||
setImage(imgSource);
|
|
||||||
});
|
|
||||||
}
|
|
||||||
});
|
|
||||||
}, []);
|
|
||||||
|
|
||||||
useEffect(() => {
|
|
||||||
if (files.length > 0) {
|
|
||||||
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({
|
|
||||||
container: axialRef.current,
|
|
||||||
});
|
|
||||||
rendererRef.current = fullScreenRenderer.getRenderer();
|
|
||||||
renderWindowRef.current = fullScreenRenderer.getRenderWindow();
|
|
||||||
actorRef.current = vtkVolume.newInstance();
|
|
||||||
mapperRef.current = vtkVolumeMapper.newInstance({ sampleDistance: 1.1 });
|
|
||||||
console.time("itk-wasm parse vtkVolumeImageData");
|
|
||||||
readImageDicomFileSeries(null, {
|
|
||||||
inputImages: files,
|
|
||||||
}).then((image) => {
|
|
||||||
const vtkImage = vtkITKHelper.convertItkToVtkImage(image.outputImage);
|
|
||||||
console.timeEnd("itk-wasm parse vtkVolumeImageData");
|
|
||||||
saveImageToIndexedDB(image.outputImage);
|
|
||||||
mapperRef.current?.setInputData(vtkImage);
|
|
||||||
mapperRef.current && actorRef.current?.setMapper(mapperRef.current);
|
|
||||||
actorRef.current && rendererRef.current?.addVolume(actorRef.current);
|
|
||||||
rendererRef.current?.resetCamera();
|
|
||||||
renderWindowRef.current?.render();
|
|
||||||
});
|
|
||||||
|
|
||||||
return () => {
|
|
||||||
actorRef.current = undefined;
|
|
||||||
mapperRef.current = undefined;
|
|
||||||
rendererRef.current = undefined;
|
|
||||||
renderWindowRef.current = undefined;
|
|
||||||
};
|
|
||||||
}
|
|
||||||
}, [files]);
|
|
||||||
|
|
||||||
const handleFolderUpload = async (
|
|
||||||
event: React.ChangeEvent<HTMLInputElement>
|
|
||||||
) => {
|
|
||||||
const target = event.target as HTMLInputElement;
|
|
||||||
if (!target.files) return;
|
|
||||||
const files = [...target.files].filter((file) =>
|
|
||||||
file.name.endsWith(".dcm")
|
|
||||||
);
|
|
||||||
setFiles(files);
|
|
||||||
};
|
|
||||||
|
|
||||||
return (
|
|
||||||
<>
|
|
||||||
<input
|
|
||||||
type="file"
|
|
||||||
onChange={handleFolderUpload}
|
|
||||||
ref={inputRef}
|
|
||||||
style={{ position: "fixed", zIndex: 100 }}
|
|
||||||
/>
|
|
||||||
<div className="mpr">
|
|
||||||
<div ref={axialRef} style={{ width: 500, height: 500 }}></div>
|
|
||||||
{/* <div ref={sagittalRef} style={{ width: 300, height: 300 }}></div>
|
|
||||||
<div ref={coronalRef} style={{ width: 300, height: 300 }}></div> */}
|
|
||||||
</div>
|
|
||||||
<img src={image} style={{ width: 200, height: 200 }} />
|
|
||||||
</>
|
|
||||||
);
|
|
||||||
}
|
|
||||||
|
|
||||||
export default App;
|
|
||||||
|
|
@ -1,8 +0,0 @@
|
||||||
.mpr {
|
|
||||||
position: fixed;
|
|
||||||
top: 20px;
|
|
||||||
left: 50%;
|
|
||||||
transform: translateX(-50%);
|
|
||||||
display: flex;
|
|
||||||
flex-direction: column;
|
|
||||||
}
|
|
||||||
|
|
@ -1 +0,0 @@
|
||||||
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="35.93" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 228"><path fill="#00D8FF" d="M210.483 73.824a171.49 171.49 0 0 0-8.24-2.597c.465-1.9.893-3.777 1.273-5.621c6.238-30.281 2.16-54.676-11.769-62.708c-13.355-7.7-35.196.329-57.254 19.526a171.23 171.23 0 0 0-6.375 5.848a155.866 155.866 0 0 0-4.241-3.917C100.759 3.829 77.587-4.822 63.673 3.233C50.33 10.957 46.379 33.89 51.995 62.588a170.974 170.974 0 0 0 1.892 8.48c-3.28.932-6.445 1.924-9.474 2.98C17.309 83.498 0 98.307 0 113.668c0 15.865 18.582 31.778 46.812 41.427a145.52 145.52 0 0 0 6.921 2.165a167.467 167.467 0 0 0-2.01 9.138c-5.354 28.2-1.173 50.591 12.134 58.266c13.744 7.926 36.812-.22 59.273-19.855a145.567 145.567 0 0 0 5.342-4.923a168.064 168.064 0 0 0 6.92 6.314c21.758 18.722 43.246 26.282 56.54 18.586c13.731-7.949 18.194-32.003 12.4-61.268a145.016 145.016 0 0 0-1.535-6.842c1.62-.48 3.21-.974 4.76-1.488c29.348-9.723 48.443-25.443 48.443-41.52c0-15.417-17.868-30.326-45.517-39.844Zm-6.365 70.984c-1.4.463-2.836.91-4.3 1.345c-3.24-10.257-7.612-21.163-12.963-32.432c5.106-11 9.31-21.767 12.459-31.957c2.619.758 5.16 1.557 7.61 2.4c23.69 8.156 38.14 20.213 38.14 29.504c0 9.896-15.606 22.743-40.946 31.14Zm-10.514 20.834c2.562 12.94 2.927 24.64 1.23 33.787c-1.524 8.219-4.59 13.698-8.382 15.893c-8.067 4.67-25.32-1.4-43.927-17.412a156.726 156.726 0 0 1-6.437-5.87c7.214-7.889 14.423-17.06 21.459-27.246c12.376-1.098 24.068-2.894 34.671-5.345a134.17 134.17 0 0 1 1.386 6.193ZM87.276 214.515c-7.882 2.783-14.16 2.863-17.955.675c-8.075-4.657-11.432-22.636-6.853-46.752a156.923 156.923 0 0 1 1.869-8.499c10.486 2.32 22.093 3.988 34.498 4.994c7.084 9.967 14.501 19.128 21.976 27.15a134.668 134.668 0 0 1-4.877 4.492c-9.933 8.682-19.886 14.842-28.658 17.94ZM50.35 144.747c-12.483-4.267-22.792-9.812-29.858-15.863c-6.35-5.437-9.555-10.836-9.555-15.216c0-9.322 13.897-21.212 37.076-29.293c2.813-.98 5.757-1.905 8.812-2.773c3.204 10.42 7.406 21.315 12.477 32.332c-5.137 11.18-9.399 22.249-12.634 32.792a134.718 134.718 0 0 1-6.318-1.979Zm12.378-84.26c-4.811-24.587-1.616-43.134 6.425-47.789c8.564-4.958 27.502 2.111 47.463 19.835a144.318 144.318 0 0 1 3.841 3.545c-7.438 7.987-14.787 17.08-21.808 26.988c-12.04 1.116-23.565 2.908-34.161 5.309a160.342 160.342 0 0 1-1.76-7.887Zm110.427 27.268a347.8 347.8 0 0 0-7.785-12.803c8.168 1.033 15.994 2.404 23.343 4.08c-2.206 7.072-4.956 14.465-8.193 22.045a381.151 381.151 0 0 0-7.365-13.322Zm-45.032-43.861c5.044 5.465 10.096 11.566 15.065 18.186a322.04 322.04 0 0 0-30.257-.006c4.974-6.559 10.069-12.652 15.192-18.18ZM82.802 87.83a323.167 323.167 0 0 0-7.227 13.238c-3.184-7.553-5.909-14.98-8.134-22.152c7.304-1.634 15.093-2.97 23.209-3.984a321.524 321.524 0 0 0-7.848 12.897Zm8.081 65.352c-8.385-.936-16.291-2.203-23.593-3.793c2.26-7.3 5.045-14.885 8.298-22.6a321.187 321.187 0 0 0 7.257 13.246c2.594 4.48 5.28 8.868 8.038 13.147Zm37.542 31.03c-5.184-5.592-10.354-11.779-15.403-18.433c4.902.192 9.899.29 14.978.29c5.218 0 10.376-.117 15.453-.343c-4.985 6.774-10.018 12.97-15.028 18.486Zm52.198-57.817c3.422 7.8 6.306 15.345 8.596 22.52c-7.422 1.694-15.436 3.058-23.88 4.071a382.417 382.417 0 0 0 7.859-13.026a347.403 347.403 0 0 0 7.425-13.565Zm-16.898 8.101a358.557 358.557 0 0 1-12.281 19.815a329.4 329.4 0 0 1-23.444.823c-7.967 0-15.716-.248-23.178-.732a310.202 310.202 0 0 1-12.513-19.846h.001a307.41 307.41 0 0 1-10.923-20.627a310.278 310.278 0 0 1 10.89-20.637l-.001.001a307.318 307.318 0 0 1 12.413-19.761c7.613-.576 15.42-.876 23.31-.876H128c7.926 0 15.743.303 23.354.883a329.357 329.357 0 0 1 12.335 19.695a358.489 358.489 0 0 1 11.036 20.54a329.472 329.472 0 0 1-11 20.722Zm22.56-122.124c8.572 4.944 11.906 24.881 6.52 51.026c-.344 1.668-.73 3.367-1.15 5.09c-10.622-2.452-22.155-4.275-34.23-5.408c-7.034-10.017-14.323-19.124-21.64-27.008a160.789 160.789 0 0 1 5.888-5.4c18.9-16.447 36.564-22.941 44.612-18.3ZM128 90.808c12.625 0 22.86 10.235 22.86 22.86s-10.235 22.86-22.86 22.86s-22.86-10.235-22.86-22.86s10.235-22.86 22.86-22.86Z"></path></svg>
|
|
||||||
|
Before Width: | Height: | Size: 4.0 KiB |
|
|
@ -1,38 +0,0 @@
|
||||||
import vtkImageData from "@kitware/vtk.js/Common/DataModel/ImageData";
|
|
||||||
|
|
||||||
export const extractAxialSliceAsImage = (
|
|
||||||
volumeData: vtkImageData,
|
|
||||||
sliceIndex: number
|
|
||||||
): string => {
|
|
||||||
const dimensions = volumeData.getDimensions();
|
|
||||||
|
|
||||||
if (sliceIndex < 0 || sliceIndex >= dimensions[2]) {
|
|
||||||
throw new Error("Invalid slice index");
|
|
||||||
}
|
|
||||||
|
|
||||||
const scalars = volumeData.getPointData().getScalars();
|
|
||||||
const slice = scalars
|
|
||||||
.getData()
|
|
||||||
.slice(
|
|
||||||
sliceIndex * dimensions[0] * dimensions[1],
|
|
||||||
(sliceIndex + 1) * dimensions[0] * dimensions[1]
|
|
||||||
);
|
|
||||||
|
|
||||||
const canvas = document.createElement("canvas");
|
|
||||||
canvas.width = dimensions[0];
|
|
||||||
canvas.height = dimensions[1];
|
|
||||||
const context = canvas.getContext("2d")!;
|
|
||||||
const imageDataObj = context.createImageData(dimensions[0], dimensions[1]);
|
|
||||||
|
|
||||||
for (let i = 0; i < slice.length; i++) {
|
|
||||||
const value = slice[i];
|
|
||||||
imageDataObj.data[i * 4] = value;
|
|
||||||
imageDataObj.data[i * 4 + 1] = value;
|
|
||||||
imageDataObj.data[i * 4 + 2] = value;
|
|
||||||
imageDataObj.data[i * 4 + 3] = 255;
|
|
||||||
}
|
|
||||||
|
|
||||||
context.putImageData(imageDataObj, 0, 0);
|
|
||||||
|
|
||||||
return canvas.toDataURL();
|
|
||||||
};
|
|
||||||
|
|
@ -1,5 +0,0 @@
|
||||||
import React from "react";
|
|
||||||
import ReactDOM from "react-dom/client";
|
|
||||||
import App from "./App.tsx";
|
|
||||||
|
|
||||||
ReactDOM.createRoot(document.getElementById("root")!).render(<App />);
|
|
||||||
|
|
@ -1,91 +0,0 @@
|
||||||
const dbName = "myDatabase";
|
|
||||||
const storeName = "images";
|
|
||||||
|
|
||||||
export const openDatabase = async (): Promise<IDBDatabase> => {
|
|
||||||
return new Promise((resolve, reject) => {
|
|
||||||
const request = indexedDB.open(dbName);
|
|
||||||
|
|
||||||
request.onupgradeneeded = (event: IDBVersionChangeEvent) => {
|
|
||||||
const db = request.result;
|
|
||||||
if (!db.objectStoreNames.contains(storeName)) {
|
|
||||||
db.createObjectStore(storeName);
|
|
||||||
}
|
|
||||||
};
|
|
||||||
|
|
||||||
request.onerror = (event) => reject(request.error);
|
|
||||||
request.onsuccess = (event) => resolve(request.result);
|
|
||||||
});
|
|
||||||
};
|
|
||||||
|
|
||||||
export const saveImageToIndexedDB = async (outputImage: any) => {
|
|
||||||
try {
|
|
||||||
const db = await openDatabase();
|
|
||||||
|
|
||||||
const transaction = db.transaction(storeName, "readwrite");
|
|
||||||
const store = transaction.objectStore(storeName);
|
|
||||||
|
|
||||||
const request = store.put(outputImage, "outputImageKey");
|
|
||||||
request.onerror = (event) =>
|
|
||||||
console.error("Error saving to IndexedDB", request.error);
|
|
||||||
request.onsuccess = (event) => console.log("Image saved to IndexedDB");
|
|
||||||
} catch (error) {
|
|
||||||
console.error("Error with IndexedDB operation", error);
|
|
||||||
}
|
|
||||||
};
|
|
||||||
|
|
||||||
export const loadImageFromIndexedDB = async (): Promise<any> => {
|
|
||||||
try {
|
|
||||||
const db = await openDatabase();
|
|
||||||
|
|
||||||
const transaction = db.transaction(storeName, "readonly");
|
|
||||||
const store = transaction.objectStore(storeName);
|
|
||||||
|
|
||||||
const request = store.get("outputImageKey");
|
|
||||||
return new Promise((resolve, reject) => {
|
|
||||||
request.onerror = (event) => {
|
|
||||||
console.error("Error fetching from IndexedDB", request.error);
|
|
||||||
reject(request.error);
|
|
||||||
};
|
|
||||||
request.onsuccess = (event) => {
|
|
||||||
if (request.result) {
|
|
||||||
console.log("Image loaded from IndexedDB");
|
|
||||||
resolve(request.result);
|
|
||||||
} else {
|
|
||||||
console.log("No data found in IndexedDB");
|
|
||||||
resolve(null);
|
|
||||||
}
|
|
||||||
};
|
|
||||||
});
|
|
||||||
} catch (error) {
|
|
||||||
console.error("Error with IndexedDB operation", error);
|
|
||||||
throw error;
|
|
||||||
}
|
|
||||||
};
|
|
||||||
|
|
||||||
export const checkExistenceInIndexedDB = async (
|
|
||||||
key: string
|
|
||||||
): Promise<boolean> => {
|
|
||||||
try {
|
|
||||||
const dbName = "myDatabase";
|
|
||||||
const storeName = "images";
|
|
||||||
const db = await openDatabase();
|
|
||||||
|
|
||||||
const transaction = db.transaction(storeName, "readonly");
|
|
||||||
const store = transaction.objectStore(storeName);
|
|
||||||
|
|
||||||
const request = store.get(key);
|
|
||||||
|
|
||||||
return new Promise((resolve, reject) => {
|
|
||||||
request.onerror = (event) => {
|
|
||||||
console.error("Error fetching from IndexedDB", request.error);
|
|
||||||
reject(request.error);
|
|
||||||
};
|
|
||||||
request.onsuccess = (event) => {
|
|
||||||
resolve(request.result !== undefined);
|
|
||||||
};
|
|
||||||
});
|
|
||||||
} catch (error) {
|
|
||||||
console.error("Error with IndexedDB operation", error);
|
|
||||||
throw error;
|
|
||||||
}
|
|
||||||
};
|
|
||||||
1
apps/phoenix/src/vite-env.d.ts
vendored
1
apps/phoenix/src/vite-env.d.ts
vendored
|
|
@ -1 +0,0 @@
|
||||||
/// <reference types="vite/client" />
|
|
||||||
|
|
@ -1,25 +0,0 @@
|
||||||
{
|
|
||||||
"compilerOptions": {
|
|
||||||
"target": "ES2020",
|
|
||||||
"useDefineForClassFields": true,
|
|
||||||
"lib": ["ES2020", "DOM", "DOM.Iterable"],
|
|
||||||
"module": "ESNext",
|
|
||||||
"skipLibCheck": true,
|
|
||||||
|
|
||||||
/* Bundler mode */
|
|
||||||
"moduleResolution": "bundler",
|
|
||||||
"allowImportingTsExtensions": true,
|
|
||||||
"resolveJsonModule": true,
|
|
||||||
"isolatedModules": true,
|
|
||||||
"noEmit": true,
|
|
||||||
"jsx": "react-jsx",
|
|
||||||
|
|
||||||
/* Linting */
|
|
||||||
"strict": true,
|
|
||||||
"noUnusedLocals": true,
|
|
||||||
"noUnusedParameters": true,
|
|
||||||
"noFallthroughCasesInSwitch": true
|
|
||||||
},
|
|
||||||
"include": ["src"],
|
|
||||||
"references": [{ "path": "./tsconfig.node.json" }]
|
|
||||||
}
|
|
||||||
|
|
@ -1,10 +0,0 @@
|
||||||
{
|
|
||||||
"compilerOptions": {
|
|
||||||
"composite": true,
|
|
||||||
"skipLibCheck": true,
|
|
||||||
"module": "ESNext",
|
|
||||||
"moduleResolution": "bundler",
|
|
||||||
"allowSyntheticDefaultImports": true
|
|
||||||
},
|
|
||||||
"include": ["vite.config.ts"]
|
|
||||||
}
|
|
||||||
|
|
@ -1,25 +0,0 @@
|
||||||
import { defineConfig } from "vite";
|
|
||||||
import react from "@vitejs/plugin-react";
|
|
||||||
import { viteStaticCopy } from "vite-plugin-static-copy";
|
|
||||||
|
|
||||||
// https://vitejs.dev/config/
|
|
||||||
export default defineConfig({
|
|
||||||
worker: {
|
|
||||||
format: "es",
|
|
||||||
},
|
|
||||||
optimizeDeps: {
|
|
||||||
exclude: ["itk-wasm", "@itk-wasm/image-io"],
|
|
||||||
},
|
|
||||||
plugins: [
|
|
||||||
react(),
|
|
||||||
viteStaticCopy({
|
|
||||||
targets: [
|
|
||||||
{ src: "../../../dist/pipelines/*", dest: "pipelines" },
|
|
||||||
{
|
|
||||||
src: "../../../node_modules/@itk-wasm/image-io/dist/pipelines/*.{js,wasm,wasm.zst}",
|
|
||||||
dest: "pipelines",
|
|
||||||
},
|
|
||||||
],
|
|
||||||
}),
|
|
||||||
],
|
|
||||||
});
|
|
||||||
|
|
@ -2,8 +2,8 @@
|
||||||
"name": "@tavi-universe",
|
"name": "@tavi-universe",
|
||||||
"version": "1.0.0",
|
"version": "1.0.0",
|
||||||
"scripts": {
|
"scripts": {
|
||||||
|
"dev:all": "chmod 777 ./terminal.sh && ./terminal.sh",
|
||||||
"mock": "pnpm run --filter @tavi/mock mock",
|
"mock": "pnpm run --filter @tavi/mock mock",
|
||||||
"dev:phoenix": "pnpm run --filter @tavi/phoenix dev",
|
|
||||||
"dev:dicom": "pnpm run --filter @tavi/dicom start:dev",
|
"dev:dicom": "pnpm run --filter @tavi/dicom start:dev",
|
||||||
"dev:logger": "pnpm run --filter @tavi/logger start:dev",
|
"dev:logger": "pnpm run --filter @tavi/logger start:dev",
|
||||||
"dev:dmp-web": "pnpm run --filter @tavi/dmp-web dev",
|
"dev:dmp-web": "pnpm run --filter @tavi/dmp-web dev",
|
||||||
|
|
|
||||||
3407
pnpm-lock.yaml
3407
pnpm-lock.yaml
File diff suppressed because it is too large
Load Diff
Loading…
Reference in New Issue
Block a user