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feat: mpr doing

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This commit is contained in:
mozzie 2023-12-20 17:02:33 +08:00
parent 5008849d82
commit c73fdb6a6d
15 changed files with 514 additions and 36 deletions

5
apps/aorta/package.json
View File

@ -29,10 +29,11 @@
"pako": "2.1.0",
"@kitware/vtk.js": "29.2.0",
"@cornerstonejs/dicom-image-loader": "1.41.0",
"cornerstone-wado-image-loader": "4.13.2",
"@cornerstonejs/core": "1.41.0",
"dcmjs": "0.30.0",
"dicomweb-client": "0.10.3"
"dicomweb-client": "0.10.3",
"@cornerstonejs/tools": "3.0.2",
"@cornerstonejs/streaming-image-volume-loader": "1.41.0"
},
"devDependencies": {
"@babel/core": "^7.21.8",

0
apps/aorta/src/modules/Root/Viewer/VolumeViewer/convertMultiframeImageIds.ts → apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/convertMultiframeImageIds.ts
View File

0
apps/aorta/src/modules/Root/Viewer/VolumeViewer/createImageIdsAndCacheMetaData.ts → apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/createImageIdsAndCacheMetaData.ts
View File

0
apps/aorta/src/modules/Root/Viewer/VolumeViewer/getPixelSpacingInformation.ts → apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/getPixelSpacingInformation.ts
View File

10
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/init.ts Normal file
View File

@ -0,0 +1,10 @@
import { initCornerstoneDICOMImageLoader } from "./initCornerstoneDicomImageLoader";
import initVolumeLoader from "./initVolumeLoader";
import { init as csRenderInit } from "@cornerstonejs/core";
// 入口
export const initCornerstone = async () => {
initCornerstoneDICOMImageLoader();
initVolumeLoader();
await csRenderInit();
};

8
apps/aorta/src/modules/Root/Viewer/VolumeViewer/initCornerstoneDICOMImageLoader.ts → apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/initCornerstoneDicomImageLoader.ts
View File

@ -1,9 +1,8 @@
import { init as csRenderInit } from "@cornerstonejs/core";
import dicomParser from "dicom-parser";
import * as cornerstone from "@cornerstonejs/core";
import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader";
const initCornerstoneDICOMImageLoader = () => {
export const initCornerstoneDICOMImageLoader = () => {
const { preferSizeOverAccuracy, useNorm16Texture } =
cornerstone.getConfiguration().rendering;
@ -30,8 +29,3 @@ const initCornerstoneDICOMImageLoader = () => {
cornerstoneDICOMImageLoader.webWorkerManager.initialize(config);
};
export const initCornerstone = async () => {
initCornerstoneDICOMImageLoader();
await csRenderInit();
};

17
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/initProviders.ts Normal file
View File

@ -0,0 +1,17 @@
import * as cornerstone from "@cornerstonejs/core";
import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider";
const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities;
export default function initProviders() {
cornerstone.metaData.addProvider(
ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider),
10000
);
cornerstone.metaData.addProvider(
calibratedPixelSpacingMetadataProvider.get.bind(
calibratedPixelSpacingMetadataProvider
),
11000
);
}

19
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/initVolumeLoader.ts Normal file
View File

@ -0,0 +1,19 @@
import { volumeLoader } from "@cornerstonejs/core";
import {
cornerstoneStreamingImageVolumeLoader,
cornerstoneStreamingDynamicImageVolumeLoader,
} from "@cornerstonejs/streaming-image-volume-loader";
export default function initVolumeLoader() {
volumeLoader.registerUnknownVolumeLoader(
cornerstoneStreamingImageVolumeLoader
);
volumeLoader.registerVolumeLoader(
"cornerstoneStreamingImageVolume",
cornerstoneStreamingImageVolumeLoader
);
volumeLoader.registerVolumeLoader(
"cornerstoneStreamingDynamicImageVolume",
cornerstoneStreamingDynamicImageVolumeLoader
);
}

17
apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/ptScalingMetaDataProvider.ts Normal file
View File

@ -0,0 +1,17 @@
import { utilities as csUtils } from "@cornerstonejs/core";
const scalingPerImageId = {};
function addInstance(imageId, scalingMetaData) {
const imageURI = csUtils.imageIdToURI(imageId);
scalingPerImageId[imageURI] = scalingMetaData;
}
function get(type, imageId) {
if (type === "scalingModule") {
const imageURI = csUtils.imageIdToURI(imageId);
return scalingPerImageId[imageURI];
}
}
export default { addInstance, get };

0
apps/aorta/src/modules/Root/Viewer/VolumeViewer/removeInvalidTags.ts → apps/aorta/src/modules/Root/Viewer/CornerstoneDicomLoader/removeInvalidTags.ts
View File

146
apps/aorta/src/modules/Root/Viewer/Crosshair/index.tsx Normal file
View File

@ -0,0 +1,146 @@
import {
Enums,
RenderingEngine,
setVolumesForViewports,
volumeLoader,
} from "@cornerstonejs/core";
import { createImageIdsAndCacheMetaData } from "../CornerstoneDicomLoader/createImageIdsAndCacheMetaData";
import { initCornerstone } from "../CornerstoneDicomLoader/init";
import { useEffect, useRef } from "react";
import * as cornerstoneTools from "@cornerstonejs/tools";
import { PublicViewportInput } from "@cornerstonejs/core/dist/types/types";
import { setCtTransferFunctionForVolumeActor } from "./setCtTransferFunctionForVolumeActor";
interface CorsshairProps {
children?: JSX.Element;
}
const {
ToolGroupManager,
Enums: csToolsEnums,
CrosshairsTool,
StackScrollMouseWheelTool,
} = cornerstoneTools;
const toolGroupId = "MY_TOOLGROUP_ID";
const volumeName = "CT_VOLUME_ID"; // Id of the volume less loader prefix
const volumeLoaderScheme = "cornerstoneStreamingImageVolume"; // Loader id which defines which volume loader to use
const volumeId = `${volumeLoaderScheme}:${volumeName}`; // VolumeId with loader id + volume id
const renderingEngineId = "myRenderingEngine";
const viewportA = "CT_AXIAL";
const viewportB = "CT_SAGITTAL";
const viewportC = "CT_CORONAL";
const viewportColors = {
[viewportA]: "rgb(200, 0, 0)",
[viewportB]: "rgb(200, 200, 0)",
[viewportC]: "rgb(0, 200, 0)",
};
const { ViewportType } = Enums;
const StudyInstanceUID =
"1.2.840.113564.345049290535.9692.637552042156233117.433089";
const SeriesInstanceUID =
"1.3.12.2.1107.5.1.4.76315.30000021042706150001900118311";
export const Corsshair = (props: CorsshairProps) => {
const viewportA = useRef(null);
const viewportB = useRef(null);
const viewportC = useRef(null);
const run = async () => {
await initCornerstone();
// Get Cornerstone imageIds and fetch metadata into RAM
const imageIds = await createImageIdsAndCacheMetaData({
StudyInstanceUID,
SeriesInstanceUID,
wadoRsRoot: "/dicom-web",
});
const volume = await volumeLoader.createAndCacheVolume(volumeId, {
imageIds,
});
console.log(volume)
// Instantiate a rendering engine
// const renderingEngine = new RenderingEngine(renderingEngineId);
// if (viewportA.current && viewportB.current && viewportC.current) {
// // Create the viewports
// const viewportInputArray: PublicViewportInput[] = [
// {
// viewportId: viewportA.current,
// type: ViewportType.ORTHOGRAPHIC,
// element: viewportA.current,
// defaultOptions: {
// orientation: Enums.OrientationAxis.AXIAL,
// background: [0, 0, 0],
// },
// },
// {
// viewportId: viewportB.current,
// type: ViewportType.ORTHOGRAPHIC,
// element: viewportB.current,
// defaultOptions: {
// orientation: Enums.OrientationAxis.SAGITTAL,
// background: [0, 0, 0],
// },
// },
// {
// viewportId: viewportC.current,
// type: ViewportType.ORTHOGRAPHIC,
// element: viewportC.current,
// defaultOptions: {
// orientation: Enums.OrientationAxis.CORONAL,
// background: [0, 0, 0],
// },
// },
// ];
// renderingEngine.setViewports(viewportInputArray);
// volume.load();
// await setVolumesForViewports(
// renderingEngine,
// [
// {
// volumeId,
// callback: () => setCtTransferFunctionForVolumeActor,
// },
// ],
// [viewportA.current!, viewportB.current!, viewportC.current!]
// );
// // Render the image
// renderingEngine.renderViewports([
// viewportA.current!,
// viewportB.current!,
// viewportC.current!,
// ]);
// }
};
useEffect(() => {
run();
}, []);
return (
<div
style={{
display: "flex",
justifyContent: "space-evenly",
gap: 20,
height: 300,
}}
>
<div ref={viewportA}></div>
<div ref={viewportB}></div>
<div ref={viewportC}></div>
</div>
);
};

20
apps/aorta/src/modules/Root/Viewer/Crosshair/setCtTransferFunctionForVolumeActor.ts Normal file
View File

@ -0,0 +1,20 @@
import { VolumeActor } from "@cornerstonejs/core/dist/types/types";
const windowWidth = 400;
const windowCenter = 40;
const lower = windowCenter - windowWidth / 2.0;
const upper = windowCenter + windowWidth / 2.0;
export const ctVoiRange = { lower, upper };
export const setCtTransferFunctionForVolumeActor = ({
volumeActor,
}: {
volumeActor: VolumeActor;
}) => {
volumeActor
.getProperty()
.getRGBTransferFunction(0)
.setMappingRange(lower, upper);
};

4
apps/aorta/src/modules/Root/Viewer/VolumeViewer/index.tsx
View File

@ -1,7 +1,7 @@
import { useEffect, useRef } from "react";
import { Enums, RenderingEngine, cache } from "@cornerstonejs/core";
import { initCornerstone } from "./initCornerstoneDicomImageLoader";
import { createImageIdsAndCacheMetaData } from "./createImageIdsAndCacheMetaData";
import { initCornerstone } from "../CornerstoneDicomLoader/initCornerstoneDicomImageLoader";
import { createImageIdsAndCacheMetaData } from "../CornerstoneDicomLoader/createImageIdsAndCacheMetaData";
import {
IStackViewport,
PublicViewportInput,

3
apps/aorta/src/modules/Root/Viewer/index.tsx
View File

@ -1,3 +1,4 @@
import { Corsshair } from "./Crosshair";
import { DiffViewer } from "./DiffViewer";
import { MprViewer } from "./MprViewer";
import { VolumeViewer } from "./VolumeViewer";
@ -9,7 +10,7 @@ interface RootViewerProps {
export const RootViewer = (props: RootViewerProps) => {
return (
<div>
<VolumeViewer />
<Corsshair />
</div>
);
};

301
pnpm-lock.yaml
View File

@ -20,6 +20,12 @@ importers:
'@cornerstonejs/dicom-image-loader':
specifier: 1.41.0
version: 192.168.4.201+4873/@cornerstonejs/dicom-image-loader@1.41.0(@babel/preset-env@7.21.5)(autoprefixer@10.4.15)(webpack@5.75.0)(wslink@1.11.4)
'@cornerstonejs/streaming-image-volume-loader':
specifier: 1.41.0
version: 1.41.0(@babel/preset-env@7.21.5)(autoprefixer@10.4.15)(webpack@5.75.0)(wslink@1.11.4)
'@cornerstonejs/tools':
specifier: 3.0.2
version: 3.0.2
'@kitware/vtk.js':
specifier: 29.2.0
version: 192.168.4.201+4873/@kitware/vtk.js@29.2.0(@babel/preset-env@7.21.5)(autoprefixer@10.4.15)(webpack@5.75.0)(wslink@1.11.4)
@ -2966,6 +2972,19 @@ packages:
regenerator-runtime: 0.14.0
dev: false
/@babel/runtime@7.1.2:
resolution: {integrity: sha512-Y3SCjmhSupzFB6wcv1KmmFucH6gDVnI30WjOcicV10ju0cZjak3Jcs67YLIXBrmZYw1xCrVeJPbycFwrqNyxpg==, tarball: http://192.168.4.201:4873/@babel%2fruntime/-/runtime-7.1.2.tgz}
dependencies:
regenerator-runtime: 0.12.1
dev: false
/@babel/runtime@7.17.9:
resolution: {integrity: sha512-lSiBBvodq29uShpWGNbgFdKYNiFDo5/HIYsaCEY9ff4sb10x9jizo2+pRrSyF4jKZCXqgzuqBOQKbUm90gQwJg==, tarball: http://192.168.4.201:4873/@babel%2fruntime/-/runtime-7.17.9.tgz}
engines: {node: '>=6.9.0'}
dependencies:
regenerator-runtime: 0.13.11
dev: false
/@babel/runtime@7.22.15:
resolution: {integrity: sha512-T0O+aa+4w0u06iNmapipJXMV4HoUir03hpx3/YqXXhu9xim3w+dVphjFWl1OH8NbZHw5Lbm9k45drDkgq2VNNA==}
engines: {node: '>=6.9.0'}
@ -3202,6 +3221,41 @@ packages:
dev: true
optional: true
/@cornerstonejs/core@1.41.0(@babel/preset-env@7.21.5)(autoprefixer@10.4.15)(webpack@5.75.0)(wslink@1.11.4):
resolution: {integrity: sha512-bAHLDGixOgenDPQee+LaB7N7TSDix9RLAwVDFpXWVglFadYxWBtupWg3b6+lMGZGUL2PLfBI9z7nnGQOCV4pgw==, tarball: http://192.168.4.201:4873/@cornerstonejs%2fcore/-/core-1.41.0.tgz}
dependencies:
'@kitware/vtk.js': 27.3.1(@babel/preset-env@7.21.5)(autoprefixer@10.4.15)(webpack@5.75.0)(wslink@1.11.4)
comlink: 4.4.1
detect-gpu: 5.0.37
gl-matrix: 3.4.3
lodash.clonedeep: 4.5.0
transitivePeerDependencies:
- '@babel/preset-env'
- autoprefixer
- webpack
- wslink
dev: false
/@cornerstonejs/streaming-image-volume-loader@1.41.0(@babel/preset-env@7.21.5)(autoprefixer@10.4.15)(webpack@5.75.0)(wslink@1.11.4):
resolution: {integrity: sha512-k86onbU0uRq9ZTlGXlYJKXCfnqKscLJJlGV0HNqQO84rHgr+dOxceTevYU573xs5+a3L+eNZU8SpeJmVO+WA6g==, tarball: http://192.168.4.201:4873/@cornerstonejs%2fstreaming-image-volume-loader/-/streaming-image-volume-loader-1.41.0.tgz}
dependencies:
'@cornerstonejs/core': 1.41.0(@babel/preset-env@7.21.5)(autoprefixer@10.4.15)(webpack@5.75.0)(wslink@1.11.4)
comlink: 4.4.1
transitivePeerDependencies:
- '@babel/preset-env'
- autoprefixer
- webpack
- wslink
dev: false
/@cornerstonejs/tools@3.0.2:
resolution: {integrity: sha512-RgPQbRey8gMIjvGUgEdMQ4E6kOxXZzqwFzmmY6YgwVc1YPubeODoESgPDhlIfasTN7DWAxcmoFRyHMQgcvu2lg==, tarball: http://192.168.4.201:4873/@cornerstonejs%2ftools/-/tools-3.0.2.tgz}
deprecated: Use cornerstone-tools instead if you are looking for cornerstone legacy, this package name will be reused for cornerstone3d tools soon
dependencies:
'@babel/runtime': 7.1.2
cornerstone-math: 0.1.10
dev: false
/@cspotcode/source-map-support@0.8.1:
resolution: {integrity: sha512-IchNf6dN4tHoMFIn/7OE8LWZ19Y6q/67Bmf6vnGREv8RSbBVb9LPJxEcnwrcwX6ixSvaiGoomAUvu4YSxXrVgw==}
engines: {node: '>=12'}
@ -3538,6 +3592,36 @@ packages:
'@jridgewell/resolve-uri': 3.1.1
'@jridgewell/sourcemap-codec': 1.4.15
/@kitware/vtk.js@27.3.1(@babel/preset-env@7.21.5)(autoprefixer@10.4.15)(webpack@5.75.0)(wslink@1.11.4):
resolution: {integrity: sha512-GvAXdOKtDDbkaSdO+UhKnDST4CW1C3fHgaDvA0wn1ZWTLm/6SFAMzarTjpzsVGYCPoEYIhCAAlBQ7K7aDcu3Vg==, tarball: http://192.168.4.201:4873/@kitware%2fvtk.js/-/vtk.js-27.3.1.tgz}
hasBin: true
peerDependencies:
'@babel/preset-env': ^7.17.10
autoprefixer: ^10.4.7
wslink: ^1.1.0
dependencies:
'@babel/preset-env': 7.21.5(@babel/core@7.21.8)
'@babel/runtime': 7.17.9
autoprefixer: 10.4.15(postcss@8.4.29)
commander: 9.2.0
d3-scale: 4.0.2
fast-deep-equal: 3.1.3
fflate: 0.7.3
gl-matrix: 3.4.3
globalthis: 1.0.3
seedrandom: 3.0.5
shader-loader: 1.3.1
shelljs: 0.8.5
spark-md5: 3.0.2
stream-browserify: 3.0.0
webworker-promise: 0.5.0
worker-loader: 3.0.8(webpack@5.75.0)
wslink: 1.11.4
xmlbuilder2: 3.0.2
transitivePeerDependencies:
- webpack
dev: false
/@leichtgewicht/ip-codec@2.0.4:
resolution: {integrity: sha512-Hcv+nVC0kZnQ3tD9GVu5xSMR4VVYOteQIr/hwFPVEvPdlXqgGEuRjiheChHgdM+JyqdgNcmzZOX/tnl0JOiI7A==}
@ -3548,7 +3632,7 @@ packages:
/@manypkg/find-root@1.1.0:
resolution: {integrity: sha512-mki5uBvhHzO8kYYix/WRy2WX8S3B5wdVSc9D6KcU5lQNglP2yt58/VfLuAK49glRXChosY8ap2oJ1qgma3GUVA==}
dependencies:
'@babel/runtime': 192.168.4.201+4873/@babel/runtime@7.22.15
'@babel/runtime': 7.22.15
'@types/node': 12.20.55
find-up: 4.1.0
fs-extra: 8.1.0
@ -4091,6 +4175,35 @@ packages:
transitivePeerDependencies:
- encoding
/@oozcitak/dom@1.15.10:
resolution: {integrity: sha512-0JT29/LaxVgRcGKvHmSrUTEvZ8BXvZhGl2LASRUgHqDTC1M5g1pLmVv56IYNyt3bG2CUjDkc67wnyZC14pbQrQ==, tarball: http://192.168.4.201:4873/@oozcitak%2fdom/-/dom-1.15.10.tgz}
engines: {node: '>=8.0'}
dependencies:
'@oozcitak/infra': 1.0.8
'@oozcitak/url': 1.0.4
'@oozcitak/util': 8.3.8
dev: false
/@oozcitak/infra@1.0.8:
resolution: {integrity: sha512-JRAUc9VR6IGHOL7OGF+yrvs0LO8SlqGnPAMqyzOuFZPSZSXI7Xf2O9+awQPSMXgIWGtgUf/dA6Hs6X6ySEaWTg==, tarball: http://192.168.4.201:4873/@oozcitak%2finfra/-/infra-1.0.8.tgz}
engines: {node: '>=6.0'}
dependencies:
'@oozcitak/util': 8.3.8
dev: false
/@oozcitak/url@1.0.4:
resolution: {integrity: sha512-kDcD8y+y3FCSOvnBI6HJgl00viO/nGbQoCINmQ0h98OhnGITrWR3bOGfwYCthgcrV8AnTJz8MzslTQbC3SOAmw==, tarball: http://192.168.4.201:4873/@oozcitak%2furl/-/url-1.0.4.tgz}
engines: {node: '>=8.0'}
dependencies:
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'@oozcitak/util': 8.3.8
dev: false
/@oozcitak/util@8.3.8:
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engines: {node: '>=8.0'}
dev: false
/@pmmmwh/react-refresh-webpack-plugin@0.5.10(react-refresh@0.14.0)(webpack-dev-server@4.13.3)(webpack@5.75.0):
resolution: {integrity: sha512-j0Ya0hCFZPd4x40qLzbhGsh9TMtdb+CJQiso+WxLOPNasohq9cc5SNUcwsZaRH6++Xh91Xkm/xHCkuIiIu0LUA==}
engines: {node: '>= 10.13'}
@ -4168,7 +4281,7 @@ packages:
react: '>=16.9.0'
react-dom: '>=16.9.0'
dependencies:
'@babel/runtime': 192.168.4.201+4873/@babel/runtime@7.22.15
'@babel/runtime': 7.22.15
rc-util: 5.37.0(react-dom@18.2.0)(react@18.2.0)
react: 18.2.0
react-dom: 18.2.0(react@18.2.0)
@ -4178,7 +4291,7 @@ packages:
resolution: {integrity: sha512-jS4E7T9Li2GuYwI6PyiVXmxTiM6b07rlD9Ge8uGZSCz3WlzcG5ZK7g5bbuKNeZ9pgUuPK/5guV781ujdVpm4HQ==}
engines: {node: '>=8.x'}
dependencies:
'@babel/runtime': 192.168.4.201+4873/@babel/runtime@7.22.15
'@babel/runtime': 7.22.15
dev: false
/@rc-component/mutate-observer@1.1.0(react-dom@18.2.0)(react@18.2.0):
@ -4202,7 +4315,7 @@ packages:
react: '>=16.9.0'
react-dom: '>=16.9.0'
dependencies:
'@babel/runtime': 192.168.4.201+4873/@babel/runtime@7.22.15
'@babel/runtime': 7.22.15
classnames: 2.3.2
rc-util: 5.37.0(react-dom@18.2.0)(react@18.2.0)
react: 18.2.0
@ -5538,7 +5651,6 @@ packages:
resolution: {integrity: sha512-o5Roy6tNG4SL/FOkCAN6RzjiakZS25RLYFrcMttJqbdd8BWrnA+fGz57iN5Pb06pvBGvl5gQ0B48dJlslXvoTg==}
dependencies:
sprintf-js: 1.0.3
dev: true
/argparse@2.0.1:
resolution: {integrity: sha512-8+9WqebbFzpX9OR+Wa6O29asIogeRMzcGtAINdpMHHyAg10f05aSFVBbcEqGf/PXw1EjAZ+q2/bEBg3DvurK3Q==}
@ -5752,7 +5864,6 @@ packages:
/big.js@5.2.2:
resolution: {integrity: sha512-vyL2OymJxmarO8gxMr0mhChsO9QGwhynfuu4+MHTAW6czfq9humCB7rKpUjDd9YUiDPU4mzpyupFSvOClAwbmQ==}
dev: true
/binary-extensions@2.2.0:
resolution: {integrity: sha512-jDctJ/IVQbZoJykoeHbhXpOlNBqGNcwXJKJog42E5HDPUwQTSdjCHdihjj0DlnheQ7blbT6dHOafNAiS8ooQKA==}
@ -6015,11 +6126,11 @@ packages:
engines: {node: '>=10.0.0'}
requiresBuild: true
dependencies:
'@babel/runtime': 192.168.4.201+4873/@babel/runtime@7.22.15
'@babel/runtime': 7.22.15
'@types/raf': 3.4.0
core-js: 3.30.1
raf: 3.4.1
regenerator-runtime: 192.168.4.201+4873/regenerator-runtime@0.13.11
regenerator-runtime: 0.13.11
rgbcolor: 1.0.1
stackblur-canvas: 2.6.0
svg-pathdata: 6.0.3
@ -6292,6 +6403,10 @@ packages:
dependencies:
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