feat: dcm转vtkVolume
This commit is contained in:
mozzie
parent
a34b2f725d
commit
b291ce1216
13
.vscode/tasks.json
vendored
13
.vscode/tasks.json
vendored
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@ -5,6 +5,7 @@
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"label": "start-all-tasks",
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"label": "start-all-tasks",
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"dependsOn": [
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"dependsOn": [
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"build:pkg",
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"build:pkg",
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"phoenix-web",
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"cert-web",
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"cert-web",
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"aorta-web",
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"aorta-web",
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"dmp-web",
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"dmp-web",
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@ -36,6 +37,18 @@
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"dev:logger"
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"dev:logger"
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]
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]
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},
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},
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{
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"label": "phoneix-web",
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"type": "shell",
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"command": "pnpm",
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"args": [
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"dev:phoenix"
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],
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"dependsOn": [
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"build:pkg"
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],
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"problemMatcher": []
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},
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{
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{
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"label": "aorta-web",
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"label": "aorta-web",
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"type": "shell",
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"type": "shell",
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@ -35,9 +35,7 @@
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"@cornerstonejs/streaming-image-volume-loader": "1.41.0",
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"@cornerstonejs/streaming-image-volume-loader": "1.41.0",
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"@cornerstonejs/calculate-suv": "1.1.0",
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"@cornerstonejs/calculate-suv": "1.1.0",
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"vtk.js": "29.2.0",
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"vtk.js": "29.2.0",
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"itk": "14.1.1",
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"@itk-wasm/dicom": "5.0.2",
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"@itk-wasm/dicom": "5.0.2",
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"itk-wasm": "1.0.0-b.160",
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"itk-image-io": "^1.0.0-b.18",
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"itk-image-io": "^1.0.0-b.18",
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"itk-mesh-io": "^1.0.0-b.18",
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"itk-mesh-io": "^1.0.0-b.18",
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"web-workers": "0.9.1"
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"web-workers": "0.9.1"
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@ -5,10 +5,12 @@ import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
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import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
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import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
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import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
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import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
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import DicomLoader from "./dicomLoader.js";
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// import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
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// import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
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import { readImageDicomFileSeries } from "@itk-wasm/dicom";
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import { readImageDicomFileSeries } from "@itk-wasm/dicom";
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// import { readImageDicomFileSeries } from 'itk-wasm'
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// import { readImageDICOMFileSeries } from "itk-wasm";
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// import { readImageDICOMFileSeries } from "itk-wasm";
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interface LocalMprProps {
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interface LocalMprProps {
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18
apps/phoenix/.eslintrc.cjs
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18
apps/phoenix/.eslintrc.cjs
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module.exports = {
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root: true,
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env: { browser: true, es2020: true },
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extends: [
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'eslint:recommended',
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'plugin:@typescript-eslint/recommended',
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'plugin:react-hooks/recommended',
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],
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ignorePatterns: ['dist', '.eslintrc.cjs'],
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parser: '@typescript-eslint/parser',
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plugins: ['react-refresh'],
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rules: {
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'react-refresh/only-export-components': [
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'warn',
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{ allowConstantExport: true },
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],
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},
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}
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24
apps/phoenix/.gitignore
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24
apps/phoenix/.gitignore
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@ -0,0 +1,24 @@
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# Logs
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logs
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*.log
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npm-debug.log*
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yarn-debug.log*
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yarn-error.log*
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pnpm-debug.log*
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lerna-debug.log*
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node_modules
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dist
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dist-ssr
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*.local
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# Editor directories and files
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.vscode/*
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!.vscode/extensions.json
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.idea
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.DS_Store
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*.suo
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*.ntvs*
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*.njsproj
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*.sln
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*.sw?
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30
apps/phoenix/README.md
Normal file
30
apps/phoenix/README.md
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@ -0,0 +1,30 @@
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# React + TypeScript + Vite
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This template provides a minimal setup to get React working in Vite with HMR and some ESLint rules.
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Currently, two official plugins are available:
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- [@vitejs/plugin-react](https://github.com/vitejs/vite-plugin-react/blob/main/packages/plugin-react/README.md) uses [Babel](https://babeljs.io/) for Fast Refresh
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- [@vitejs/plugin-react-swc](https://github.com/vitejs/vite-plugin-react-swc) uses [SWC](https://swc.rs/) for Fast Refresh
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## Expanding the ESLint configuration
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If you are developing a production application, we recommend updating the configuration to enable type aware lint rules:
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- Configure the top-level `parserOptions` property like this:
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```js
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export default {
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// other rules...
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parserOptions: {
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ecmaVersion: 'latest',
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sourceType: 'module',
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project: ['./tsconfig.json', './tsconfig.node.json'],
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tsconfigRootDir: __dirname,
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},
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}
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```
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- Replace `plugin:@typescript-eslint/recommended` to `plugin:@typescript-eslint/recommended-type-checked` or `plugin:@typescript-eslint/strict-type-checked`
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- Optionally add `plugin:@typescript-eslint/stylistic-type-checked`
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- Install [eslint-plugin-react](https://github.com/jsx-eslint/eslint-plugin-react) and add `plugin:react/recommended` & `plugin:react/jsx-runtime` to the `extends` list
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13
apps/phoenix/index.html
Normal file
13
apps/phoenix/index.html
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<!doctype html>
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<html lang="en">
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<head>
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<meta charset="UTF-8" />
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<link rel="icon" type="image/svg+xml" href="/vite.svg" />
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
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<title>Vite + React + TS</title>
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</head>
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<body>
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<div id="root"></div>
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<script type="module" src="/src/main.tsx"></script>
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</body>
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</html>
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33
apps/phoenix/package.json
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33
apps/phoenix/package.json
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{
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"name": "@tavi/phoenix",
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"private": true,
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"version": "0.0.0",
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"type": "module",
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"scripts": {
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"dev": "vite",
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"build": "tsc && vite build",
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"lint": "eslint . --ext ts,tsx --report-unused-disable-directives --max-warnings 0",
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"preview": "vite preview"
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},
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"dependencies": {
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"react": "^18.2.0",
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"react-dom": "^18.2.0",
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"@kitware/vtk.js": "29.3.0",
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"@itk-wasm/image-io": "0.5.2",
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"@itk-wasm/mesh-io": "0.2.2",
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"@itk-wasm/dicom": "5.0.2"
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},
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"devDependencies": {
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"@types/react": "^18.2.43",
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"@types/react-dom": "^18.2.17",
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"@typescript-eslint/eslint-plugin": "^6.14.0",
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"@typescript-eslint/parser": "^6.14.0",
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"@vitejs/plugin-react": "^4.2.1",
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"eslint": "^8.55.0",
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"eslint-plugin-react-hooks": "^4.6.0",
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"eslint-plugin-react-refresh": "^0.4.5",
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"typescript": "^5.2.2",
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"vite": "^5.0.8",
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"vite-plugin-static-copy": "1.0.0"
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}
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}
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1
apps/phoenix/public/vite.svg
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1
apps/phoenix/public/vite.svg
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<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="31.88" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 257"><defs><linearGradient id="IconifyId1813088fe1fbc01fb466" x1="-.828%" x2="57.636%" y1="7.652%" y2="78.411%"><stop offset="0%" stop-color="#41D1FF"></stop><stop offset="100%" stop-color="#BD34FE"></stop></linearGradient><linearGradient id="IconifyId1813088fe1fbc01fb467" x1="43.376%" x2="50.316%" y1="2.242%" y2="89.03%"><stop offset="0%" stop-color="#FFEA83"></stop><stop offset="8.333%" stop-color="#FFDD35"></stop><stop offset="100%" stop-color="#FFA800"></stop></linearGradient></defs><path fill="url(#IconifyId1813088fe1fbc01fb466)" d="M255.153 37.938L134.897 252.976c-2.483 4.44-8.862 4.466-11.382.048L.875 37.958c-2.746-4.814 1.371-10.646 6.827-9.67l120.385 21.517a6.537 6.537 0 0 0 2.322-.004l117.867-21.483c5.438-.991 9.574 4.796 6.877 9.62Z"></path><path fill="url(#IconifyId1813088fe1fbc01fb467)" d="M185.432.063L96.44 17.501a3.268 3.268 0 0 0-2.634 3.014l-5.474 92.456a3.268 3.268 0 0 0 3.997 3.378l24.777-5.718c2.318-.535 4.413 1.507 3.936 3.838l-7.361 36.047c-.495 2.426 1.782 4.5 4.151 3.78l15.304-4.649c2.372-.72 4.652 1.36 4.15 3.788l-11.698 56.621c-.732 3.542 3.979 5.473 5.943 2.437l1.313-2.028l72.516-144.72c1.215-2.423-.88-5.186-3.54-4.672l-25.505 4.922c-2.396.462-4.435-1.77-3.759-4.114l16.646-57.705c.677-2.35-1.37-4.583-3.769-4.113Z"></path></svg>
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After Width: | Height: | Size: 1.5 KiB |
62
apps/phoenix/src/App.tsx
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62
apps/phoenix/src/App.tsx
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import { readImageDicomFileSeries } from "@itk-wasm/dicom";
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import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
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import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
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import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
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import "@kitware/vtk.js/Rendering/Profiles/Volume";
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import vtkActor from "@kitware/vtk.js/Rendering/Core/Actor";
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import { useEffect, useRef, useState } from "react";
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import vtkRenderer from "@kitware/vtk.js/Rendering/Core/Renderer";
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import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
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function App() {
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const [files, setFiles] = useState<File[]>([]);
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const rendererRef = useRef<vtkRenderer>();
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const mapperRef = useRef();
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const actorRef = useRef();
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const renderWindowRef = useRef();
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useEffect(() => {
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if (files.length > 0) {
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const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({});
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rendererRef.current = fullScreenRenderer.getRenderer();
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renderWindowRef.current = fullScreenRenderer.getRenderWindow();
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actorRef.current = vtkVolume.newInstance();
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mapperRef.current = vtkVolumeMapper.newInstance({ sampleDistance: 1.1});
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readImageDicomFileSeries(null, {
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inputImages: files,
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}).then((image) => {
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const vtkImage = vtkITKHelper.convertItkToVtkImage(image.outputImage);
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mapperRef.current.setInputData(vtkImage);
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actorRef.current.setMapper(mapperRef.current);
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rendererRef.current?.addVolume(actorRef.current)
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rendererRef.current.resetCamera();
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renderWindowRef.current.render();
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});
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}
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}, [files]);
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const handleFolderUpload = async (event: Event) => {
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const target = event.target as HTMLInputElement;
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if (!target.files) return;
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const files = [...target.files].filter((file) =>
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file.name.endsWith(".dcm")
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);
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setFiles(files);
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};
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return (
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<>
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<input
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type="file"
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onChange={handleFolderUpload}
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webkitdirectory="true"
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style={{ position: "fixed", zIndex: 100 }}
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/>
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</>
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);
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}
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export default App;
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1
apps/phoenix/src/assets/react.svg
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1
apps/phoenix/src/assets/react.svg
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||||||
|
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="35.93" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 228"><path fill="#00D8FF" d="M210.483 73.824a171.49 171.49 0 0 0-8.24-2.597c.465-1.9.893-3.777 1.273-5.621c6.238-30.281 2.16-54.676-11.769-62.708c-13.355-7.7-35.196.329-57.254 19.526a171.23 171.23 0 0 0-6.375 5.848a155.866 155.866 0 0 0-4.241-3.917C100.759 3.829 77.587-4.822 63.673 3.233C50.33 10.957 46.379 33.89 51.995 62.588a170.974 170.974 0 0 0 1.892 8.48c-3.28.932-6.445 1.924-9.474 2.98C17.309 83.498 0 98.307 0 113.668c0 15.865 18.582 31.778 46.812 41.427a145.52 145.52 0 0 0 6.921 2.165a167.467 167.467 0 0 0-2.01 9.138c-5.354 28.2-1.173 50.591 12.134 58.266c13.744 7.926 36.812-.22 59.273-19.855a145.567 145.567 0 0 0 5.342-4.923a168.064 168.064 0 0 0 6.92 6.314c21.758 18.722 43.246 26.282 56.54 18.586c13.731-7.949 18.194-32.003 12.4-61.268a145.016 145.016 0 0 0-1.535-6.842c1.62-.48 3.21-.974 4.76-1.488c29.348-9.723 48.443-25.443 48.443-41.52c0-15.417-17.868-30.326-45.517-39.844Zm-6.365 70.984c-1.4.463-2.836.91-4.3 1.345c-3.24-10.257-7.612-21.163-12.963-32.432c5.106-11 9.31-21.767 12.459-31.957c2.619.758 5.16 1.557 7.61 2.4c23.69 8.156 38.14 20.213 38.14 29.504c0 9.896-15.606 22.743-40.946 31.14Zm-10.514 20.834c2.562 12.94 2.927 24.64 1.23 33.787c-1.524 8.219-4.59 13.698-8.382 15.893c-8.067 4.67-25.32-1.4-43.927-17.412a156.726 156.726 0 0 1-6.437-5.87c7.214-7.889 14.423-17.06 21.459-27.246c12.376-1.098 24.068-2.894 34.671-5.345a134.17 134.17 0 0 1 1.386 6.193ZM87.276 214.515c-7.882 2.783-14.16 2.863-17.955.675c-8.075-4.657-11.432-22.636-6.853-46.752a156.923 156.923 0 0 1 1.869-8.499c10.486 2.32 22.093 3.988 34.498 4.994c7.084 9.967 14.501 19.128 21.976 27.15a134.668 134.668 0 0 1-4.877 4.492c-9.933 8.682-19.886 14.842-28.658 17.94ZM50.35 144.747c-12.483-4.267-22.792-9.812-29.858-15.863c-6.35-5.437-9.555-10.836-9.555-15.216c0-9.322 13.897-21.212 37.076-29.293c2.813-.98 5.757-1.905 8.812-2.773c3.204 10.42 7.406 21.315 12.477 32.332c-5.137 11.18-9.399 22.249-12.634 32.792a134.718 134.718 0 0 1-6.318-1.979Zm12.378-84.26c-4.811-24.587-1.616-43.134 6.425-47.789c8.564-4.958 27.502 2.111 47.463 19.835a144.318 144.318 0 0 1 3.841 3.545c-7.438 7.987-14.787 17.08-21.808 26.988c-12.04 1.116-23.565 2.908-34.161 5.309a160.342 160.342 0 0 1-1.76-7.887Zm110.427 27.268a347.8 347.8 0 0 0-7.785-12.803c8.168 1.033 15.994 2.404 23.343 4.08c-2.206 7.072-4.956 14.465-8.193 22.045a381.151 381.151 0 0 0-7.365-13.322Zm-45.032-43.861c5.044 5.465 10.096 11.566 15.065 18.186a322.04 322.04 0 0 0-30.257-.006c4.974-6.559 10.069-12.652 15.192-18.18ZM82.802 87.83a323.167 323.167 0 0 0-7.227 13.238c-3.184-7.553-5.909-14.98-8.134-22.152c7.304-1.634 15.093-2.97 23.209-3.984a321.524 321.524 0 0 0-7.848 12.897Zm8.081 65.352c-8.385-.936-16.291-2.203-23.593-3.793c2.26-7.3 5.045-14.885 8.298-22.6a321.187 321.187 0 0 0 7.257 13.246c2.594 4.48 5.28 8.868 8.038 13.147Zm37.542 31.03c-5.184-5.592-10.354-11.779-15.403-18.433c4.902.192 9.899.29 14.978.29c5.218 0 10.376-.117 15.453-.343c-4.985 6.774-10.018 12.97-15.028 18.486Zm52.198-57.817c3.422 7.8 6.306 15.345 8.596 22.52c-7.422 1.694-15.436 3.058-23.88 4.071a382.417 382.417 0 0 0 7.859-13.026a347.403 347.403 0 0 0 7.425-13.565Zm-16.898 8.101a358.557 358.557 0 0 1-12.281 19.815a329.4 329.4 0 0 1-23.444.823c-7.967 0-15.716-.248-23.178-.732a310.202 310.202 0 0 1-12.513-19.846h.001a307.41 307.41 0 0 1-10.923-20.627a310.278 310.278 0 0 1 10.89-20.637l-.001.001a307.318 307.318 0 0 1 12.413-19.761c7.613-.576 15.42-.876 23.31-.876H128c7.926 0 15.743.303 23.354.883a329.357 329.357 0 0 1 12.335 19.695a358.489 358.489 0 0 1 11.036 20.54a329.472 329.472 0 0 1-11 20.722Zm22.56-122.124c8.572 4.944 11.906 24.881 6.52 51.026c-.344 1.668-.73 3.367-1.15 5.09c-10.622-2.452-22.155-4.275-34.23-5.408c-7.034-10.017-14.323-19.124-21.64-27.008a160.789 160.789 0 0 1 5.888-5.4c18.9-16.447 36.564-22.941 44.612-18.3ZM128 90.808c12.625 0 22.86 10.235 22.86 22.86s-10.235 22.86-22.86 22.86s-22.86-10.235-22.86-22.86s10.235-22.86 22.86-22.86Z"></path></svg>
|
||||||
|
After Width: | Height: | Size: 4.0 KiB |
5
apps/phoenix/src/main.tsx
Normal file
5
apps/phoenix/src/main.tsx
Normal file
|
|
@ -0,0 +1,5 @@
|
||||||
|
import React from "react";
|
||||||
|
import ReactDOM from "react-dom/client";
|
||||||
|
import App from "./App.tsx";
|
||||||
|
|
||||||
|
ReactDOM.createRoot(document.getElementById("root")!).render(<App />);
|
||||||
1
apps/phoenix/src/vite-env.d.ts
vendored
Normal file
1
apps/phoenix/src/vite-env.d.ts
vendored
Normal file
|
|
@ -0,0 +1 @@
|
||||||
|
/// <reference types="vite/client" />
|
||||||
25
apps/phoenix/tsconfig.json
Normal file
25
apps/phoenix/tsconfig.json
Normal file
|
|
@ -0,0 +1,25 @@
|
||||||
|
{
|
||||||
|
"compilerOptions": {
|
||||||
|
"target": "ES2020",
|
||||||
|
"useDefineForClassFields": true,
|
||||||
|
"lib": ["ES2020", "DOM", "DOM.Iterable"],
|
||||||
|
"module": "ESNext",
|
||||||
|
"skipLibCheck": true,
|
||||||
|
|
||||||
|
/* Bundler mode */
|
||||||
|
"moduleResolution": "bundler",
|
||||||
|
"allowImportingTsExtensions": true,
|
||||||
|
"resolveJsonModule": true,
|
||||||
|
"isolatedModules": true,
|
||||||
|
"noEmit": true,
|
||||||
|
"jsx": "react-jsx",
|
||||||
|
|
||||||
|
/* Linting */
|
||||||
|
"strict": true,
|
||||||
|
"noUnusedLocals": true,
|
||||||
|
"noUnusedParameters": true,
|
||||||
|
"noFallthroughCasesInSwitch": true
|
||||||
|
},
|
||||||
|
"include": ["src"],
|
||||||
|
"references": [{ "path": "./tsconfig.node.json" }]
|
||||||
|
}
|
||||||
10
apps/phoenix/tsconfig.node.json
Normal file
10
apps/phoenix/tsconfig.node.json
Normal file
|
|
@ -0,0 +1,10 @@
|
||||||
|
{
|
||||||
|
"compilerOptions": {
|
||||||
|
"composite": true,
|
||||||
|
"skipLibCheck": true,
|
||||||
|
"module": "ESNext",
|
||||||
|
"moduleResolution": "bundler",
|
||||||
|
"allowSyntheticDefaultImports": true
|
||||||
|
},
|
||||||
|
"include": ["vite.config.ts"]
|
||||||
|
}
|
||||||
25
apps/phoenix/vite.config.ts
Normal file
25
apps/phoenix/vite.config.ts
Normal file
|
|
@ -0,0 +1,25 @@
|
||||||
|
import { defineConfig } from "vite";
|
||||||
|
import react from "@vitejs/plugin-react";
|
||||||
|
import { viteStaticCopy } from "vite-plugin-static-copy";
|
||||||
|
|
||||||
|
// https://vitejs.dev/config/
|
||||||
|
export default defineConfig({
|
||||||
|
worker: {
|
||||||
|
format: "es",
|
||||||
|
},
|
||||||
|
optimizeDeps: {
|
||||||
|
exclude: ["itk-wasm", "@itk-wasm/image-io"],
|
||||||
|
},
|
||||||
|
plugins: [
|
||||||
|
react(),
|
||||||
|
viteStaticCopy({
|
||||||
|
targets: [
|
||||||
|
{ src: "../../../dist/pipelines/*", dest: "pipelines" },
|
||||||
|
{
|
||||||
|
src: "../../../node_modules/@itk-wasm/image-io/dist/pipelines/*.{js,wasm,wasm.zst}",
|
||||||
|
dest: "pipelines",
|
||||||
|
},
|
||||||
|
],
|
||||||
|
}),
|
||||||
|
],
|
||||||
|
});
|
||||||
|
|
@ -2,8 +2,8 @@
|
||||||
"name": "@tavi-universe",
|
"name": "@tavi-universe",
|
||||||
"version": "1.0.0",
|
"version": "1.0.0",
|
||||||
"scripts": {
|
"scripts": {
|
||||||
"dev:all": "chmod 777 ./terminal.sh && ./terminal.sh",
|
|
||||||
"mock": "pnpm run --filter @tavi/mock mock",
|
"mock": "pnpm run --filter @tavi/mock mock",
|
||||||
|
"dev:phoenix": "pnpm run --filter @tavi/phoenix dev",
|
||||||
"dev:dicom": "pnpm run --filter @tavi/dicom start:dev",
|
"dev:dicom": "pnpm run --filter @tavi/dicom start:dev",
|
||||||
"dev:logger": "pnpm run --filter @tavi/logger start:dev",
|
"dev:logger": "pnpm run --filter @tavi/logger start:dev",
|
||||||
"dev:dmp-web": "pnpm run --filter @tavi/dmp-web dev",
|
"dev:dmp-web": "pnpm run --filter @tavi/dmp-web dev",
|
||||||
|
|
|
||||||
2054
pnpm-lock.yaml
2054
pnpm-lock.yaml
File diff suppressed because it is too large
Load Diff
Loading…
Reference in New Issue
Block a user