feat: dcm转vtkVolume

This commit is contained in:
mozzie 2023-12-27 13:52:01 +08:00
parent a34b2f725d
commit b291ce1216
18 changed files with 2268 additions and 55 deletions

13
.vscode/tasks.json vendored
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@ -5,6 +5,7 @@
"label": "start-all-tasks",
"dependsOn": [
"build:pkg",
"phoenix-web",
"cert-web",
"aorta-web",
"dmp-web",
@ -36,6 +37,18 @@
"dev:logger"
]
},
{
"label": "phoneix-web",
"type": "shell",
"command": "pnpm",
"args": [
"dev:phoenix"
],
"dependsOn": [
"build:pkg"
],
"problemMatcher": []
},
{
"label": "aorta-web",
"type": "shell",

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@ -35,9 +35,7 @@
"@cornerstonejs/streaming-image-volume-loader": "1.41.0",
"@cornerstonejs/calculate-suv": "1.1.0",
"vtk.js": "29.2.0",
"itk": "14.1.1",
"@itk-wasm/dicom": "5.0.2",
"itk-wasm": "1.0.0-b.160",
"itk-image-io": "^1.0.0-b.18",
"itk-mesh-io": "^1.0.0-b.18",
"web-workers": "0.9.1"

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@ -5,10 +5,12 @@ import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
import DicomLoader from "./dicomLoader.js";
// import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
import { readImageDicomFileSeries } from "@itk-wasm/dicom";
// import { readImageDicomFileSeries } from 'itk-wasm'
// import { readImageDICOMFileSeries } from "itk-wasm";
interface LocalMprProps {

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module.exports = {
root: true,
env: { browser: true, es2020: true },
extends: [
'eslint:recommended',
'plugin:@typescript-eslint/recommended',
'plugin:react-hooks/recommended',
],
ignorePatterns: ['dist', '.eslintrc.cjs'],
parser: '@typescript-eslint/parser',
plugins: ['react-refresh'],
rules: {
'react-refresh/only-export-components': [
'warn',
{ allowConstantExport: true },
],
},
}

24
apps/phoenix/.gitignore vendored Normal file
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# Logs
logs
*.log
npm-debug.log*
yarn-debug.log*
yarn-error.log*
pnpm-debug.log*
lerna-debug.log*
node_modules
dist
dist-ssr
*.local
# Editor directories and files
.vscode/*
!.vscode/extensions.json
.idea
.DS_Store
*.suo
*.ntvs*
*.njsproj
*.sln
*.sw?

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apps/phoenix/README.md Normal file
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# React + TypeScript + Vite
This template provides a minimal setup to get React working in Vite with HMR and some ESLint rules.
Currently, two official plugins are available:
- [@vitejs/plugin-react](https://github.com/vitejs/vite-plugin-react/blob/main/packages/plugin-react/README.md) uses [Babel](https://babeljs.io/) for Fast Refresh
- [@vitejs/plugin-react-swc](https://github.com/vitejs/vite-plugin-react-swc) uses [SWC](https://swc.rs/) for Fast Refresh
## Expanding the ESLint configuration
If you are developing a production application, we recommend updating the configuration to enable type aware lint rules:
- Configure the top-level `parserOptions` property like this:
```js
export default {
// other rules...
parserOptions: {
ecmaVersion: 'latest',
sourceType: 'module',
project: ['./tsconfig.json', './tsconfig.node.json'],
tsconfigRootDir: __dirname,
},
}
```
- Replace `plugin:@typescript-eslint/recommended` to `plugin:@typescript-eslint/recommended-type-checked` or `plugin:@typescript-eslint/strict-type-checked`
- Optionally add `plugin:@typescript-eslint/stylistic-type-checked`
- Install [eslint-plugin-react](https://github.com/jsx-eslint/eslint-plugin-react) and add `plugin:react/recommended` & `plugin:react/jsx-runtime` to the `extends` list

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apps/phoenix/index.html Normal file
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<!doctype html>
<html lang="en">
<head>
<meta charset="UTF-8" />
<link rel="icon" type="image/svg+xml" href="/vite.svg" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Vite + React + TS</title>
</head>
<body>
<div id="root"></div>
<script type="module" src="/src/main.tsx"></script>
</body>
</html>

33
apps/phoenix/package.json Normal file
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{
"name": "@tavi/phoenix",
"private": true,
"version": "0.0.0",
"type": "module",
"scripts": {
"dev": "vite",
"build": "tsc && vite build",
"lint": "eslint . --ext ts,tsx --report-unused-disable-directives --max-warnings 0",
"preview": "vite preview"
},
"dependencies": {
"react": "^18.2.0",
"react-dom": "^18.2.0",
"@kitware/vtk.js": "29.3.0",
"@itk-wasm/image-io": "0.5.2",
"@itk-wasm/mesh-io": "0.2.2",
"@itk-wasm/dicom": "5.0.2"
},
"devDependencies": {
"@types/react": "^18.2.43",
"@types/react-dom": "^18.2.17",
"@typescript-eslint/eslint-plugin": "^6.14.0",
"@typescript-eslint/parser": "^6.14.0",
"@vitejs/plugin-react": "^4.2.1",
"eslint": "^8.55.0",
"eslint-plugin-react-hooks": "^4.6.0",
"eslint-plugin-react-refresh": "^0.4.5",
"typescript": "^5.2.2",
"vite": "^5.0.8",
"vite-plugin-static-copy": "1.0.0"
}
}

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apps/phoenix/src/App.tsx Normal file
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import { readImageDicomFileSeries } from "@itk-wasm/dicom";
import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
import "@kitware/vtk.js/Rendering/Profiles/Volume";
import vtkActor from "@kitware/vtk.js/Rendering/Core/Actor";
import { useEffect, useRef, useState } from "react";
import vtkRenderer from "@kitware/vtk.js/Rendering/Core/Renderer";
import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
function App() {
const [files, setFiles] = useState<File[]>([]);
const rendererRef = useRef<vtkRenderer>();
const mapperRef = useRef();
const actorRef = useRef();
const renderWindowRef = useRef();
useEffect(() => {
if (files.length > 0) {
const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({});
rendererRef.current = fullScreenRenderer.getRenderer();
renderWindowRef.current = fullScreenRenderer.getRenderWindow();
actorRef.current = vtkVolume.newInstance();
mapperRef.current = vtkVolumeMapper.newInstance({ sampleDistance: 1.1});
readImageDicomFileSeries(null, {
inputImages: files,
}).then((image) => {
const vtkImage = vtkITKHelper.convertItkToVtkImage(image.outputImage);
mapperRef.current.setInputData(vtkImage);
actorRef.current.setMapper(mapperRef.current);
rendererRef.current?.addVolume(actorRef.current)
rendererRef.current.resetCamera();
renderWindowRef.current.render();
});
}
}, [files]);
const handleFolderUpload = async (event: Event) => {
const target = event.target as HTMLInputElement;
if (!target.files) return;
const files = [...target.files].filter((file) =>
file.name.endsWith(".dcm")
);
setFiles(files);
};
return (
<>
<input
type="file"
onChange={handleFolderUpload}
webkitdirectory="true"
style={{ position: "fixed", zIndex: 100 }}
/>
</>
);
}
export default App;

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import React from "react";
import ReactDOM from "react-dom/client";
import App from "./App.tsx";
ReactDOM.createRoot(document.getElementById("root")!).render(<App />);

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apps/phoenix/src/vite-env.d.ts vendored Normal file
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/// <reference types="vite/client" />

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{
"compilerOptions": {
"target": "ES2020",
"useDefineForClassFields": true,
"lib": ["ES2020", "DOM", "DOM.Iterable"],
"module": "ESNext",
"skipLibCheck": true,
/* Bundler mode */
"moduleResolution": "bundler",
"allowImportingTsExtensions": true,
"resolveJsonModule": true,
"isolatedModules": true,
"noEmit": true,
"jsx": "react-jsx",
/* Linting */
"strict": true,
"noUnusedLocals": true,
"noUnusedParameters": true,
"noFallthroughCasesInSwitch": true
},
"include": ["src"],
"references": [{ "path": "./tsconfig.node.json" }]
}

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{
"compilerOptions": {
"composite": true,
"skipLibCheck": true,
"module": "ESNext",
"moduleResolution": "bundler",
"allowSyntheticDefaultImports": true
},
"include": ["vite.config.ts"]
}

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import { defineConfig } from "vite";
import react from "@vitejs/plugin-react";
import { viteStaticCopy } from "vite-plugin-static-copy";
// https://vitejs.dev/config/
export default defineConfig({
worker: {
format: "es",
},
optimizeDeps: {
exclude: ["itk-wasm", "@itk-wasm/image-io"],
},
plugins: [
react(),
viteStaticCopy({
targets: [
{ src: "../../../dist/pipelines/*", dest: "pipelines" },
{
src: "../../../node_modules/@itk-wasm/image-io/dist/pipelines/*.{js,wasm,wasm.zst}",
dest: "pipelines",
},
],
}),
],
});

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"name": "@tavi-universe",
"version": "1.0.0",
"scripts": {
"dev:all": "chmod 777 ./terminal.sh && ./terminal.sh",
"mock": "pnpm run --filter @tavi/mock mock",
"dev:phoenix": "pnpm run --filter @tavi/phoenix dev",
"dev:dicom": "pnpm run --filter @tavi/dicom start:dev",
"dev:logger": "pnpm run --filter @tavi/logger start:dev",
"dev:dmp-web": "pnpm run --filter @tavi/dmp-web dev",

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