feat: dcm转vtkVolume

2023-12-27 13:52:01 +08:00 · 2023-12-27 13:52:01 +08:00 · b291ce1216
commit b291ce1216
parent a34b2f725d
18 changed files with 2268 additions and 55 deletions
--- a/.vscode/tasks.json
+++ b/.vscode/tasks.json
@ -5,6 +5,7 @@
      "label": "start-all-tasks",
      "dependsOn": [
        "build:pkg",
+        "phoenix-web",
        "cert-web",
        "aorta-web",
        "dmp-web",
@ -36,6 +37,18 @@
        "dev:logger"
      ]
    },
+    {
+      "label": "phoneix-web",
+      "type": "shell",
+      "command": "pnpm",
+      "args": [
+        "dev:phoenix"
+      ],
+      "dependsOn": [
+        "build:pkg"
+      ],
+      "problemMatcher": []
+    },
    {
      "label": "aorta-web",
      "type": "shell",
--- a/apps/aorta/package.json
+++ b/apps/aorta/package.json
@ -35,9 +35,7 @@
    "@cornerstonejs/streaming-image-volume-loader": "1.41.0",
    "@cornerstonejs/calculate-suv": "1.1.0",
    "vtk.js": "29.2.0",
-    "itk": "14.1.1",
    "@itk-wasm/dicom": "5.0.2",
-    "itk-wasm": "1.0.0-b.160",
    "itk-image-io": "^1.0.0-b.18",
    "itk-mesh-io": "^1.0.0-b.18",
    "web-workers": "0.9.1"
--- a/apps/aorta/src/modules/Root/Viewer/LocalMpr/index.tsx
+++ b/apps/aorta/src/modules/Root/Viewer/LocalMpr/index.tsx
@ -5,10 +5,12 @@ import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
 import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";

 import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
-import DicomLoader from "./dicomLoader.js";

 // import readImageDICOMFileSeries from "itk/readImageDICOMFileSeries";
+
 import { readImageDicomFileSeries } from "@itk-wasm/dicom";
+// import { readImageDicomFileSeries } from 'itk-wasm'
+
 // import { readImageDICOMFileSeries } from "itk-wasm";

 interface LocalMprProps {
--- a/apps/phoenix/.eslintrc.cjs
+++ b/apps/phoenix/.eslintrc.cjs
@ -0,0 +1,18 @@
+module.exports = {
+  root: true,
+  env: { browser: true, es2020: true },
+  extends: [
+    'eslint:recommended',
+    'plugin:@typescript-eslint/recommended',
+    'plugin:react-hooks/recommended',
+  ],
+  ignorePatterns: ['dist', '.eslintrc.cjs'],
+  parser: '@typescript-eslint/parser',
+  plugins: ['react-refresh'],
+  rules: {
+    'react-refresh/only-export-components': [
+      'warn',
+      { allowConstantExport: true },
+    ],
+  },
+}
--- a/apps/phoenix/.gitignore
+++ b/apps/phoenix/.gitignore
@ -0,0 +1,24 @@
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+pnpm-debug.log*
+lerna-debug.log*
+
+node_modules
+dist
+dist-ssr
+*.local
+
+# Editor directories and files
+.vscode/*
+!.vscode/extensions.json
+.idea
+.DS_Store
+*.suo
+*.ntvs*
+*.njsproj
+*.sln
+*.sw?
--- a/apps/phoenix/README.md
+++ b/apps/phoenix/README.md
@ -0,0 +1,30 @@
+# React + TypeScript + Vite
+
+This template provides a minimal setup to get React working in Vite with HMR and some ESLint rules.
+
+Currently, two official plugins are available:
+
+- [@vitejs/plugin-react](https://github.com/vitejs/vite-plugin-react/blob/main/packages/plugin-react/README.md) uses [Babel](https://babeljs.io/) for Fast Refresh
+- [@vitejs/plugin-react-swc](https://github.com/vitejs/vite-plugin-react-swc) uses [SWC](https://swc.rs/) for Fast Refresh
+
+## Expanding the ESLint configuration
+
+If you are developing a production application, we recommend updating the configuration to enable type aware lint rules:
+
+- Configure the top-level `parserOptions` property like this:
+
+```js
+export default {
+  // other rules...
+  parserOptions: {
+    ecmaVersion: 'latest',
+    sourceType: 'module',
+    project: ['./tsconfig.json', './tsconfig.node.json'],
+    tsconfigRootDir: __dirname,
+  },
+}
+```
+
+- Replace `plugin:@typescript-eslint/recommended` to `plugin:@typescript-eslint/recommended-type-checked` or `plugin:@typescript-eslint/strict-type-checked`
+- Optionally add `plugin:@typescript-eslint/stylistic-type-checked`
+- Install [eslint-plugin-react](https://github.com/jsx-eslint/eslint-plugin-react) and add `plugin:react/recommended` & `plugin:react/jsx-runtime` to the `extends` list
--- a/apps/phoenix/index.html
+++ b/apps/phoenix/index.html
@ -0,0 +1,13 @@
+<!doctype html>
+<html lang="en">
+  <head>
+    <meta charset="UTF-8" />
+    <link rel="icon" type="image/svg+xml" href="/vite.svg" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+    <title>Vite + React + TS</title>
+  </head>
+  <body>
+    <div id="root"></div>
+    <script type="module" src="/src/main.tsx"></script>
+  </body>
+</html>
--- a/apps/phoenix/package.json
+++ b/apps/phoenix/package.json
@ -0,0 +1,33 @@
+{
+  "name": "@tavi/phoenix",
+  "private": true,
+  "version": "0.0.0",
+  "type": "module",
+  "scripts": {
+    "dev": "vite",
+    "build": "tsc && vite build",
+    "lint": "eslint . --ext ts,tsx --report-unused-disable-directives --max-warnings 0",
+    "preview": "vite preview"
+  },
+  "dependencies": {
+    "react": "^18.2.0",
+    "react-dom": "^18.2.0",
+    "@kitware/vtk.js": "29.3.0",
+    "@itk-wasm/image-io": "0.5.2",
+    "@itk-wasm/mesh-io": "0.2.2",
+    "@itk-wasm/dicom": "5.0.2"
+  },
+  "devDependencies": {
+    "@types/react": "^18.2.43",
+    "@types/react-dom": "^18.2.17",
+    "@typescript-eslint/eslint-plugin": "^6.14.0",
+    "@typescript-eslint/parser": "^6.14.0",
+    "@vitejs/plugin-react": "^4.2.1",
+    "eslint": "^8.55.0",
+    "eslint-plugin-react-hooks": "^4.6.0",
+    "eslint-plugin-react-refresh": "^0.4.5",
+    "typescript": "^5.2.2",
+    "vite": "^5.0.8",
+    "vite-plugin-static-copy": "1.0.0"
+  }
+}
--- a/apps/phoenix/public/vite.svg
+++ b/apps/phoenix/public/vite.svg
@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="31.88" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 257"><defs><linearGradient id="IconifyId1813088fe1fbc01fb466" x1="-.828%" x2="57.636%" y1="7.652%" y2="78.411%"><stop offset="0%" stop-color="#41D1FF"></stop><stop offset="100%" stop-color="#BD34FE"></stop></linearGradient><linearGradient id="IconifyId1813088fe1fbc01fb467" x1="43.376%" x2="50.316%" y1="2.242%" y2="89.03%"><stop offset="0%" stop-color="#FFEA83"></stop><stop offset="8.333%" stop-color="#FFDD35"></stop><stop offset="100%" stop-color="#FFA800"></stop></linearGradient></defs><path fill="url(#IconifyId1813088fe1fbc01fb466)" d="M255.153 37.938L134.897 252.976c-2.483 4.44-8.862 4.466-11.382.048L.875 37.958c-2.746-4.814 1.371-10.646 6.827-9.67l120.385 21.517a6.537 6.537 0 0 0 2.322-.004l117.867-21.483c5.438-.991 9.574 4.796 6.877 9.62Z"></path><path fill="url(#IconifyId1813088fe1fbc01fb467)" d="M185.432.063L96.44 17.501a3.268 3.268 0 0 0-2.634 3.014l-5.474 92.456a3.268 3.268 0 0 0 3.997 3.378l24.777-5.718c2.318-.535 4.413 1.507 3.936 3.838l-7.361 36.047c-.495 2.426 1.782 4.5 4.151 3.78l15.304-4.649c2.372-.72 4.652 1.36 4.15 3.788l-11.698 56.621c-.732 3.542 3.979 5.473 5.943 2.437l1.313-2.028l72.516-144.72c1.215-2.423-.88-5.186-3.54-4.672l-25.505 4.922c-2.396.462-4.435-1.77-3.759-4.114l16.646-57.705c.677-2.35-1.37-4.583-3.769-4.113Z"></path></svg>
--- a/apps/phoenix/src/App.tsx
+++ b/apps/phoenix/src/App.tsx
@ -0,0 +1,62 @@
+import { readImageDicomFileSeries } from "@itk-wasm/dicom";
+import vtkITKHelper from "@kitware/vtk.js/Common/DataModel/ITKHelper";
+import vtkVolume from "@kitware/vtk.js/Rendering/Core/Volume";
+import vtkFullScreenRenderWindow from "@kitware/vtk.js/Rendering/Misc/FullScreenRenderWindow";
+import "@kitware/vtk.js/Rendering/Profiles/Volume";
+import vtkActor from "@kitware/vtk.js/Rendering/Core/Actor";
+import { useEffect, useRef, useState } from "react";
+import vtkRenderer from "@kitware/vtk.js/Rendering/Core/Renderer";
+import vtkVolumeMapper from "@kitware/vtk.js/Rendering/Core/VolumeMapper";
+
+function App() {
+  const [files, setFiles] = useState<File[]>([]);
+  const rendererRef = useRef<vtkRenderer>();
+  const mapperRef = useRef();
+  const actorRef = useRef();
+  const renderWindowRef = useRef();
+
+  useEffect(() => {
+    if (files.length > 0) {
+      const fullScreenRenderer = vtkFullScreenRenderWindow.newInstance({});
+      rendererRef.current = fullScreenRenderer.getRenderer();
+      renderWindowRef.current = fullScreenRenderer.getRenderWindow();
+      actorRef.current = vtkVolume.newInstance();
+      mapperRef.current = vtkVolumeMapper.newInstance({ sampleDistance: 1.1});
+
+      readImageDicomFileSeries(null, {
+        inputImages: files,
+      }).then((image) => {
+        const vtkImage = vtkITKHelper.convertItkToVtkImage(image.outputImage);
+
+        mapperRef.current.setInputData(vtkImage);
+        actorRef.current.setMapper(mapperRef.current);
+
+        rendererRef.current?.addVolume(actorRef.current)
+        rendererRef.current.resetCamera();
+        renderWindowRef.current.render();
+      });
+    }
+  }, [files]);
+
+  const handleFolderUpload = async (event: Event) => {
+    const target = event.target as HTMLInputElement;
+    if (!target.files) return;
+    const files = [...target.files].filter((file) =>
+      file.name.endsWith(".dcm")
+    );
+    setFiles(files);
+  };
+
+  return (
+    <>
+      <input
+        type="file"
+        onChange={handleFolderUpload}
+        webkitdirectory="true"
+        style={{ position: "fixed", zIndex: 100 }}
+      />
+    </>
+  );
+}
+
+export default App;
--- a/apps/phoenix/src/assets/react.svg
+++ b/apps/phoenix/src/assets/react.svg
@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" role="img" class="iconify iconify--logos" width="35.93" height="32" preserveAspectRatio="xMidYMid meet" viewBox="0 0 256 228"><path fill="#00D8FF" d="M210.483 73.824a171.49 171.49 0 0 0-8.24-2.597c.465-1.9.893-3.777 1.273-5.621c6.238-30.281 2.16-54.676-11.769-62.708c-13.355-7.7-35.196.329-57.254 19.526a171.23 171.23 0 0 0-6.375 5.848a155.866 155.866 0 0 0-4.241-3.917C100.759 3.829 77.587-4.822 63.673 3.233C50.33 10.957 46.379 33.89 51.995 62.588a170.974 170.974 0 0 0 1.892 8.48c-3.28.932-6.445 1.924-9.474 2.98C17.309 83.498 0 98.307 0 113.668c0 15.865 18.582 31.778 46.812 41.427a145.52 145.52 0 0 0 6.921 2.165a167.467 167.467 0 0 0-2.01 9.138c-5.354 28.2-1.173 50.591 12.134 58.266c13.744 7.926 36.812-.22 59.273-19.855a145.567 145.567 0 0 0 5.342-4.923a168.064 168.064 0 0 0 6.92 6.314c21.758 18.722 43.246 26.282 56.54 18.586c13.731-7.949 18.194-32.003 12.4-61.268a145.016 145.016 0 0 0-1.535-6.842c1.62-.48 3.21-.974 4.76-1.488c29.348-9.723 48.443-25.443 48.443-41.52c0-15.417-17.868-30.326-45.517-39.844Zm-6.365 70.984c-1.4.463-2.836.91-4.3 1.345c-3.24-10.257-7.612-21.163-12.963-32.432c5.106-11 9.31-21.767 12.459-31.957c2.619.758 5.16 1.557 7.61 2.4c23.69 8.156 38.14 20.213 38.14 29.504c0 9.896-15.606 22.743-40.946 31.14Zm-10.514 20.834c2.562 12.94 2.927 24.64 1.23 33.787c-1.524 8.219-4.59 13.698-8.382 15.893c-8.067 4.67-25.32-1.4-43.927-17.412a156.726 156.726 0 0 1-6.437-5.87c7.214-7.889 14.423-17.06 21.459-27.246c12.376-1.098 24.068-2.894 34.671-5.345a134.17 134.17 0 0 1 1.386 6.193ZM87.276 214.515c-7.882 2.783-14.16 2.863-17.955.675c-8.075-4.657-11.432-22.636-6.853-46.752a156.923 156.923 0 0 1 1.869-8.499c10.486 2.32 22.093 3.988 34.498 4.994c7.084 9.967 14.501 19.128 21.976 27.15a134.668 134.668 0 0 1-4.877 4.492c-9.933 8.682-19.886 14.842-28.658 17.94ZM50.35 144.747c-12.483-4.267-22.792-9.812-29.858-15.863c-6.35-5.437-9.555-10.836-9.555-15.216c0-9.322 13.897-21.212 37.076-29.293c2.813-.98 5.757-1.905 8.812-2.773c3.204 10.42 7.406 21.315 12.477 32.332c-5.137 11.18-9.399 22.249-12.634 32.792a134.718 134.718 0 0 1-6.318-1.979Zm12.378-84.26c-4.811-24.587-1.616-43.134 6.425-47.789c8.564-4.958 27.502 2.111 47.463 19.835a144.318 144.318 0 0 1 3.841 3.545c-7.438 7.987-14.787 17.08-21.808 26.988c-12.04 1.116-23.565 2.908-34.161 5.309a160.342 160.342 0 0 1-1.76-7.887Zm110.427 27.268a347.8 347.8 0 0 0-7.785-12.803c8.168 1.033 15.994 2.404 23.343 4.08c-2.206 7.072-4.956 14.465-8.193 22.045a381.151 381.151 0 0 0-7.365-13.322Zm-45.032-43.861c5.044 5.465 10.096 11.566 15.065 18.186a322.04 322.04 0 0 0-30.257-.006c4.974-6.559 10.069-12.652 15.192-18.18ZM82.802 87.83a323.167 323.167 0 0 0-7.227 13.238c-3.184-7.553-5.909-14.98-8.134-22.152c7.304-1.634 15.093-2.97 23.209-3.984a321.524 321.524 0 0 0-7.848 12.897Zm8.081 65.352c-8.385-.936-16.291-2.203-23.593-3.793c2.26-7.3 5.045-14.885 8.298-22.6a321.187 321.187 0 0 0 7.257 13.246c2.594 4.48 5.28 8.868 8.038 13.147Zm37.542 31.03c-5.184-5.592-10.354-11.779-15.403-18.433c4.902.192 9.899.29 14.978.29c5.218 0 10.376-.117 15.453-.343c-4.985 6.774-10.018 12.97-15.028 18.486Zm52.198-57.817c3.422 7.8 6.306 15.345 8.596 22.52c-7.422 1.694-15.436 3.058-23.88 4.071a382.417 382.417 0 0 0 7.859-13.026a347.403 347.403 0 0 0 7.425-13.565Zm-16.898 8.101a358.557 358.557 0 0 1-12.281 19.815a329.4 329.4 0 0 1-23.444.823c-7.967 0-15.716-.248-23.178-.732a310.202 310.202 0 0 1-12.513-19.846h.001a307.41 307.41 0 0 1-10.923-20.627a310.278 310.278 0 0 1 10.89-20.637l-.001.001a307.318 307.318 0 0 1 12.413-19.761c7.613-.576 15.42-.876 23.31-.876H128c7.926 0 15.743.303 23.354.883a329.357 329.357 0 0 1 12.335 19.695a358.489 358.489 0 0 1 11.036 20.54a329.472 329.472 0 0 1-11 20.722Zm22.56-122.124c8.572 4.944 11.906 24.881 6.52 51.026c-.344 1.668-.73 3.367-1.15 5.09c-10.622-2.452-22.155-4.275-34.23-5.408c-7.034-10.017-14.323-19.124-21.64-27.008a160.789 160.789 0 0 1 5.888-5.4c18.9-16.447 36.564-22.941 44.612-18.3ZM128 90.808c12.625 0 22.86 10.235 22.86 22.86s-10.235 22.86-22.86 22.86s-22.86-10.235-22.86-22.86s10.235-22.86 22.86-22.86Z"></path></svg>
--- a/apps/phoenix/src/main.tsx
+++ b/apps/phoenix/src/main.tsx
@ -0,0 +1,5 @@
+import React from "react";
+import ReactDOM from "react-dom/client";
+import App from "./App.tsx";
+
+ReactDOM.createRoot(document.getElementById("root")!).render(<App />);
--- a/apps/phoenix/src/vite-env.d.ts
+++ b/apps/phoenix/src/vite-env.d.ts
@ -0,0 +1 @@
+/// <reference types="vite/client" />
--- a/apps/phoenix/tsconfig.json
+++ b/apps/phoenix/tsconfig.json
@ -0,0 +1,25 @@
+{
+  "compilerOptions": {
+    "target": "ES2020",
+    "useDefineForClassFields": true,
+    "lib": ["ES2020", "DOM", "DOM.Iterable"],
+    "module": "ESNext",
+    "skipLibCheck": true,
+
+    /* Bundler mode */
+    "moduleResolution": "bundler",
+    "allowImportingTsExtensions": true,
+    "resolveJsonModule": true,
+    "isolatedModules": true,
+    "noEmit": true,
+    "jsx": "react-jsx",
+
+    /* Linting */
+    "strict": true,
+    "noUnusedLocals": true,
+    "noUnusedParameters": true,
+    "noFallthroughCasesInSwitch": true
+  },
+  "include": ["src"],
+  "references": [{ "path": "./tsconfig.node.json" }]
+}
--- a/apps/phoenix/tsconfig.node.json
+++ b/apps/phoenix/tsconfig.node.json
@ -0,0 +1,10 @@
+{
+  "compilerOptions": {
+    "composite": true,
+    "skipLibCheck": true,
+    "module": "ESNext",
+    "moduleResolution": "bundler",
+    "allowSyntheticDefaultImports": true
+  },
+  "include": ["vite.config.ts"]
+}
--- a/apps/phoenix/vite.config.ts
+++ b/apps/phoenix/vite.config.ts
@ -0,0 +1,25 @@
+import { defineConfig } from "vite";
+import react from "@vitejs/plugin-react";
+import { viteStaticCopy } from "vite-plugin-static-copy";
+
+// https://vitejs.dev/config/
+export default defineConfig({
+  worker: {
+    format: "es",
+  },
+  optimizeDeps: {
+    exclude: ["itk-wasm", "@itk-wasm/image-io"],
+  },
+  plugins: [
+    react(),
+    viteStaticCopy({
+      targets: [
+        { src: "../../../dist/pipelines/*", dest: "pipelines" },
+        {
+          src: "../../../node_modules/@itk-wasm/image-io/dist/pipelines/*.{js,wasm,wasm.zst}",
+          dest: "pipelines",
+        },
+      ],
+    }),
+  ],
+});
--- a/package.json
+++ b/package.json
@ -2,8 +2,8 @@
  "name": "@tavi-universe",
  "version": "1.0.0",
  "scripts": {
-    "dev:all": "chmod 777 ./terminal.sh && ./terminal.sh",
    "mock": "pnpm run --filter @tavi/mock mock",
+    "dev:phoenix": "pnpm run --filter @tavi/phoenix dev",
    "dev:dicom": "pnpm run --filter @tavi/dicom start:dev",
    "dev:logger": "pnpm run --filter @tavi/logger start:dev",
    "dev:dmp-web": "pnpm run --filter @tavi/dmp-web dev",
--- a/pnpm-lock.yaml
+++ b/pnpm-lock.yaml
				`@ -0,0 +1 @@`
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