diff --git a/apps/desktop/electron/core/pacs.ts b/apps/desktop/electron/core/pacs.ts index 03bd332..dff16cd 100644 --- a/apps/desktop/electron/core/pacs.ts +++ b/apps/desktop/electron/core/pacs.ts @@ -25,9 +25,10 @@ export const getPacsPath = ( export const runOrthancServer = (pacsPath: string) => { if (existsSync(pacsPath)) { - const child_process = spawn(pacsPath); + const configPath = path.join(path.dirname(pacsPath), "config.json"); + const child_process = spawn(pacsPath, [configPath]); child_process.stdout.on("data", (data) => log.info(data)); - // child_process.stderr.on('data', data => log.error(data)) + child_process.stderr.on("data", (data) => log.error(data)); } else { console.error("pacsPath is a not exist"); log.error("pacsPath is a not exist"); diff --git a/apps/desktop/electron/main.ts b/apps/desktop/electron/main.ts index 92985cc..447ec14 100644 --- a/apps/desktop/electron/main.ts +++ b/apps/desktop/electron/main.ts @@ -38,6 +38,8 @@ const themeTitleBarStyles = { export const platform = process.platform === "darwin" ? "macos" : "windows"; +app.commandLine.appendSwitch('disable-web-security'); + function createWindow() { win = new BrowserWindow({ width: 1280, @@ -49,7 +51,7 @@ function createWindow() { titleBarOverlay: { height: 36, ...themeTitleBarStyles[theme] }, // 渲染进程发消息动态改变这个 webPreferences: { preload: path.join(__dirname, "preload.mjs"), - nodeIntegration: true, + nodeIntegration: true }, }); diff --git a/apps/desktop/extraResources/orthanc-mac-24.8.1/WebViewerCache/cache.db b/apps/desktop/extraResources/orthanc-mac-24.8.1/WebViewerCache/cache.db new file mode 100644 index 0000000..e28397d Binary files /dev/null and b/apps/desktop/extraResources/orthanc-mac-24.8.1/WebViewerCache/cache.db differ diff --git a/apps/desktop/extraResources/orthanc-mac-24.8.1/WebViewerCache/cache.db-wal b/apps/desktop/extraResources/orthanc-mac-24.8.1/WebViewerCache/cache.db-wal new file mode 100644 index 0000000..e69de29 diff --git a/apps/desktop/extraResources/orthanc-mac-24.8.1/configMacOS.json b/apps/desktop/extraResources/orthanc-mac-24.8.1/config.json similarity index 57% rename from apps/desktop/extraResources/orthanc-mac-24.8.1/configMacOS.json rename to apps/desktop/extraResources/orthanc-mac-24.8.1/config.json index 1aac1d9..5a1dc66 100644 --- a/apps/desktop/extraResources/orthanc-mac-24.8.1/configMacOS.json +++ b/apps/desktop/extraResources/orthanc-mac-24.8.1/config.json @@ -1,14 +1,26 @@ { // The reference of the Orthanc configuration file is available at: // https://orthanc.uclouvain.be/hg/orthanc/file/default/OrthancServer/Resources/Configuration.json - "Name" : "MyOrthanc", + "Name": "macos-othanc-dev", // Load all the Orthanc plugins that are available in this folder: - "Plugins" : [ "." ], + "Plugins": ["./libOrthancDicomWeb.dylib"], + + "DicomWeb": { + "Enable": true, + "Root": "/dicom-web/", + "EnableWado": true, + "WadoRoot": "/wado", + "Ssl": false, + "StudiesMetadata": "Full", + "SeriesMetadata": "Full", + "MetadataWorkerThreadsCount": 4, + "PublicRoot": "/" + }, // Orthanc Explorer 2 configuration. Reference is available at: // https://github.com/orthanc-server/orthanc-explorer-2/blob/master/Plugin/DefaultConfiguration.json - "OrthancExplorer2" : { + "OrthancExplorer2": { "Enable": true, "IsDefaultOrthancUI": false } diff --git a/apps/desktop/extraResources/orthanc-win64-1.12.4/config.json b/apps/desktop/extraResources/orthanc-win64-1.12.4/config.json new file mode 100644 index 0000000..5a1dc66 --- /dev/null +++ b/apps/desktop/extraResources/orthanc-win64-1.12.4/config.json @@ -0,0 +1,27 @@ +{ + // The reference of the Orthanc configuration file is available at: + // https://orthanc.uclouvain.be/hg/orthanc/file/default/OrthancServer/Resources/Configuration.json + "Name": "macos-othanc-dev", + + // Load all the Orthanc plugins that are available in this folder: + "Plugins": ["./libOrthancDicomWeb.dylib"], + + "DicomWeb": { + "Enable": true, + "Root": "/dicom-web/", + "EnableWado": true, + "WadoRoot": "/wado", + "Ssl": false, + "StudiesMetadata": "Full", + "SeriesMetadata": "Full", + "MetadataWorkerThreadsCount": 4, + "PublicRoot": "/" + }, + + // Orthanc Explorer 2 configuration. Reference is available at: + // https://github.com/orthanc-server/orthanc-explorer-2/blob/master/Plugin/DefaultConfiguration.json + "OrthancExplorer2": { + "Enable": true, + "IsDefaultOrthancUI": false + } +} diff --git a/apps/desktop/package.json b/apps/desktop/package.json index f409980..d034c33 100644 --- a/apps/desktop/package.json +++ b/apps/desktop/package.json @@ -65,7 +65,13 @@ "axios": "1.7.7", "lodash": "4.17.21", "electron-log": "5.2.0", - "form-data": "4.0.0" + "form-data": "4.0.0", + "@cornerstonejs/core": "1.84.4", + "@cornerstonejs/tools": "1.84.4", + "@cornerstonejs/dicom-image-loader": "1.84.4", + "@cornerstonejs/streaming-image-volume-loader": "1.84.4", + "dicomweb-client": "0.10.4", + "dcmjs": "0.34.1" }, "devDependencies": { "@radix-ui/react-icons": "^1.3.0", @@ -87,6 +93,7 @@ "vite": "^5.1.6", "vite-plugin-electron": "^0.28.6", "vite-plugin-electron-renderer": "^0.14.5", - "@types/lodash": "4.17.7" + "@types/lodash": "4.17.7", + "vite-plugin-node-polyfills": "0.22.0" } } diff --git a/apps/desktop/src/pages/Datasource/CarouselSeries.tsx b/apps/desktop/src/pages/Datasource/CarouselSeries.tsx index 9198c33..2bfba56 100644 --- a/apps/desktop/src/pages/Datasource/CarouselSeries.tsx +++ b/apps/desktop/src/pages/Datasource/CarouselSeries.tsx @@ -1,51 +1,49 @@ -import { Card } from "@/components/ui/card" +import { Card } from "@/components/ui/card"; import { Carousel, CarouselContent, CarouselItem, - type CarouselApi, -} from "@/components/ui/carousel" -import { EllipsisIcon, FileDown, Rotate3DIcon, Sparkles, Torus } from "lucide-react"; -import { useEffect, useState } from "react" -import { SeriesInfo } from "./type" -import { Badge } from "@/components/ui/badge" -import { DropdownMenu, DropdownMenuContent, DropdownMenuGroup, DropdownMenuItem, DropdownMenuShortcut, DropdownMenuTrigger } from "@/components/ui/dropdown-menu" +} from "@/components/ui/carousel"; +import { + EllipsisIcon, + FileDown, + Rotate3DIcon, + Sparkles, + Torus, +} from "lucide-react"; +import { SeriesInfo } from "./type"; +import { Badge } from "@/components/ui/badge"; +import { + DropdownMenu, + DropdownMenuContent, + DropdownMenuGroup, + DropdownMenuItem, + DropdownMenuShortcut, + DropdownMenuTrigger, +} from "@/components/ui/dropdown-menu"; -export type CarouselAction = 'viewMpr' | 'view3D' | 'exportMeaurement' | 'viewReport' +export type CarouselAction = + | "viewMpr" + | "view3D" + | "exportMeaurement" + | "viewReport"; interface CarouselSeriesProps { - seriesList: SeriesInfo[] - onClickItem?: (series: SeriesInfo, action: CarouselAction) => void + seriesList: SeriesInfo[]; + onClickItem?: (series: SeriesInfo, action: CarouselAction) => void; } export function CarouselSeries(props: CarouselSeriesProps) { - const [api, setApi] = useState() - const [current, setCurrent] = useState(0) - const [count, setCount] = useState(0) - - useEffect(() => { - if (!api) return - - setCount(api.scrollSnapList().length) - setCurrent(api.selectedScrollSnap() + 1) - - api.on("select", () => { - setCurrent(api.selectedScrollSnap() + 1) - }) - }, [api]) - - - return (
- + {props.seriesList.map((series) => ( - + -
+
@@ -59,35 +57,63 @@ export function CarouselSeries(props: CarouselSeriesProps) { - props.onClickItem?.(series, 'viewMpr')}> + + props.onClickItem?.(series, "viewMpr") + } + > MPR 阅片 - + + + - props.onClickItem?.(series, 'view3D')}> + + props.onClickItem?.(series, "view3D") + } + > 3D 重建 - + + + - props.onClickItem?.(series, 'exportMeaurement')}> + + props.onClickItem?.(series, "exportMeaurement") + } + > 导出测量 - + + + - props.onClickItem?.(series, 'viewReport')}> + + props.onClickItem?.(series, "viewReport") + } + > 查看报告 - + + +
-
- {series.MainDicomTags.SeriesDescription} +
+ {series.MainDicomTags.SeriesDescription}
-
+
{series.Instances.length} - {series.MainDicomTags.BodyPartExamined && {series.MainDicomTags.BodyPartExamined}} + {series.MainDicomTags.BodyPartExamined && ( + + {series.MainDicomTags.BodyPartExamined} + + )}
@@ -95,9 +121,6 @@ export function CarouselSeries(props: CarouselSeriesProps) { ))} -
- {current} / {count} -
- ) + ); } diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/convertMultiframeImageIds.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/convertMultiframeImageIds.ts new file mode 100644 index 0000000..836e809 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/convertMultiframeImageIds.ts @@ -0,0 +1,72 @@ +import { metaData } from "@cornerstonejs/core"; +import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader"; + +/** + * Preloads imageIds metadata in memory + **/ +export const prefetchMetadataInformation = async ( + imageIdsToPrefetch: string[] +): Promise => { + for (let i = 0; i < imageIdsToPrefetch.length; i++) { + await cornerstoneDICOMImageLoader.wadouri.loadImage(imageIdsToPrefetch[i]) + .promise; + } +}; + +interface FrameInformation { + frameIndex: number; + imageIdFrameless: string; +} + +export const getFrameInformation = (imageId: string): FrameInformation => { + if (imageId.includes("wadors:")) { + const frameIndex = imageId.indexOf("/frames/"); + const imageIdFrameless = + frameIndex > 0 ? imageId.slice(0, frameIndex + 8) : imageId; + return { + frameIndex, + imageIdFrameless, + }; + } else { + const frameIndex = imageId.indexOf("&frame="); + let imageIdFrameless = + frameIndex > 0 ? imageId.slice(0, frameIndex + 7) : imageId; + if (!imageIdFrameless.includes("&frame=")) { + imageIdFrameless += "&frame="; + } + return { + frameIndex, + imageIdFrameless, + }; + } +}; + +/** + * Converts a list of imageids possibly referring to multiframe dicom images + * into a list of imageids where each imageid refers to one frame. + * For each imageId representing a multiframe image with n frames, + * it creates n new imageids, one for each frame, and returns the new list of imageids. + * If a particular imageid does not refer to a multiframe image data, it will be just copied into the new list. + * @returns new list of imageids where each imageid represents a frame + */ +export const convertMultiframeImageIds = (imageIds: string[]): string[] => { + const newImageIds: string[] = []; + imageIds.forEach((imageId) => { + const { imageIdFrameless } = getFrameInformation(imageId); + const instanceMetaData = metaData.get("multiframeModule", imageId); + if ( + instanceMetaData && + instanceMetaData.NumberOfFrames && + instanceMetaData.NumberOfFrames > 1 + ) { + const numberOfFrames = instanceMetaData.NumberOfFrames; + for (let i = 0; i < numberOfFrames; i++) { + const newImageId = imageIdFrameless + (i + 1); + newImageIds.push(newImageId); + } + } else { + newImageIds.push(imageId); + } + }); + return newImageIds; +}; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/createImageIdsAndCacheMetaData.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/createImageIdsAndCacheMetaData.ts new file mode 100644 index 0000000..c7bccf7 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/createImageIdsAndCacheMetaData.ts @@ -0,0 +1,139 @@ +import { api } from "dicomweb-client"; +import dcmjs from "dcmjs"; +import { utilities } from "@cornerstonejs/core"; +import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader"; +import { getPixelSpacingInformation } from "./getPixelSpacingInformation"; +import { convertMultiframeImageIds } from "./convertMultiframeImageIds"; +import { removeInvalidTags } from "./removeInvalidTags"; +import getPTImageIdInstanceMetadata from "./getPTImageIdInstanceMetadata"; +import { calculateSUVScalingFactors } from "@cornerstonejs/calculate-suv"; +import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider"; + +const { DicomMetaDictionary } = dcmjs.data; +const { calibratedPixelSpacingMetadataProvider } = utilities; + +const SOP_INSTANCE_UID = "00080018"; +const SERIES_INSTANCE_UID = "0020000E"; +const MODALITY = "00080060"; + +interface CreateImageIdsAndCacheMetaDataOptions { + StudyInstanceUID: string; + SeriesInstanceUID: string; + SOPInstanceUID?: string | null; + wadoRsRoot: string; + client?: api.DICOMwebClient | null; +} + +/** + * 从 DICOMweb 服务创建图像 ID 并缓存相关元数据。 + * + * @param options - 包含图像和 DICOMweb 服务信息的对象 + * @returns 图像 ID 数组 + */ +export const createImageIdsAndCacheMetaData = async ( + options: CreateImageIdsAndCacheMetaDataOptions +): Promise => { + const client = + options.client || + new api.DICOMwebClient({ url: options.wadoRsRoot, singlepart: true }); + + try { + const instances = await client.retrieveSeriesMetadata({ + studyInstanceUID: options.StudyInstanceUID, + seriesInstanceUID: options.SeriesInstanceUID, + }); + + const modality = (instances[0] as unknown as any)[MODALITY].Value[0]; + console.log("modality", modality); + + let imageIds = instances.map((instanceMetaData: any) => { + const SeriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0]; + const SOPInstanceUIDToUse = + options.SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0]; + + const prefix = "wadors:"; + + const imageId = + prefix + + options.wadoRsRoot + + "/studies/" + + options.StudyInstanceUID + + "/series/" + + SeriesInstanceUID + + "/instances/" + + SOPInstanceUIDToUse + + "/frames/1"; + + cornerstoneDICOMImageLoader.wadors.metaDataManager.add( + imageId, + instanceMetaData + ); + return imageId; + }); + + imageIds = convertMultiframeImageIds(imageIds); + + imageIds.forEach((imageId) => { + let instanceMetaData = + cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId); + + instanceMetaData = removeInvalidTags(instanceMetaData); + + if (instanceMetaData) { + const metadata = + DicomMetaDictionary.naturalizeDataset(instanceMetaData); + const pixelSpacing = getPixelSpacingInformation(metadata) as Number[]; + + if (pixelSpacing) { + // FIXME: cornerstone类型定义有问题，这里.add方法缺少type属性 + calibratedPixelSpacingMetadataProvider.add(imageId, { + // @ts-ignore + rowPixelSpacing: pixelSpacing[0], + // @ts-ignore + columnPixelSpacing: pixelSpacing[1], + }); + } + } + }); + + if (modality === "PT") { + const InstanceMetadataArray: any = []; + imageIds.forEach((imageId) => { + const instanceMetadata = getPTImageIdInstanceMetadata(imageId); + + // TODO: Temporary fix because static-wado is producing a string, not an array of values + // (or maybe dcmjs isn't parsing it correctly?) + // It's showing up like 'DECY\\ATTN\\SCAT\\DTIM\\RAN\\RADL\\DCAL\\SLSENS\\NORM' + // but calculate-suv expects ['DECY', 'ATTN', ...] + if (typeof instanceMetadata.CorrectedImage === "string") { + instanceMetadata.CorrectedImage = + instanceMetadata.CorrectedImage.split("\\"); + } + + if (instanceMetadata) { + InstanceMetadataArray.push(instanceMetadata); + } + }); + if (InstanceMetadataArray.length) { + try { + const suvScalingFactors = calculateSUVScalingFactors( + InstanceMetadataArray + ); + InstanceMetadataArray.forEach((instanceMetadata, index) => { + ptScalingMetaDataProvider.addInstance( + imageIds[index], + suvScalingFactors[index] + ); + }); + } catch (error) { + console.log(error); + } + } + } + + return imageIds; + } catch (error) { + console.log(error); + throw new Error("PACS 中数据不存在"); + } +}; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/getPTImageIdInstanceMetadata.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/getPTImageIdInstanceMetadata.ts new file mode 100644 index 0000000..0090447 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/getPTImageIdInstanceMetadata.ts @@ -0,0 +1,211 @@ +import { metaData } from "@cornerstonejs/core"; +import type { InstanceMetadata } from "@cornerstonejs/calculate-suv"; + +export default function getPTImageIdInstanceMetadata( + imageId: string +): InstanceMetadata { + const petSequenceModule = metaData.get("petIsotopeModule", imageId); + const generalSeriesModule = metaData.get("generalSeriesModule", imageId); + const patientStudyModule = metaData.get("patientStudyModule", imageId); + + const ptSeriesModule = metaData.get("petSeriesModule", imageId); + const ptImageModule = metaData.get("petImageModule", imageId); + + if (!petSequenceModule) { + throw new Error("petSequenceModule metadata is required"); + } + + const radiopharmaceuticalInfo = petSequenceModule.radiopharmaceuticalInfo; + + const { seriesDate, seriesTime, acquisitionDate, acquisitionTime } = + generalSeriesModule; + const { patientWeight } = patientStudyModule; + const { correctedImage, units, decayCorrection } = ptSeriesModule; + + if ( + seriesDate === undefined || + seriesTime === undefined || + patientWeight === undefined || + acquisitionDate === undefined || + acquisitionTime === undefined || + correctedImage === undefined || + units === undefined || + decayCorrection === undefined || + radiopharmaceuticalInfo.radionuclideTotalDose === undefined || + radiopharmaceuticalInfo.radionuclideHalfLife === undefined || + (radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime === undefined && + seriesDate === undefined && + radiopharmaceuticalInfo.radiopharmaceuticalStartTime === undefined) + // + ) { + throw new Error("required metadata are missing"); + } + + const instanceMetadata: InstanceMetadata = { + CorrectedImage: correctedImage, + Units: units, + RadionuclideHalfLife: radiopharmaceuticalInfo.radionuclideHalfLife, + RadionuclideTotalDose: radiopharmaceuticalInfo.radionuclideTotalDose, + DecayCorrection: decayCorrection, + PatientWeight: patientWeight, + SeriesDate: seriesDate, + SeriesTime: seriesTime, + AcquisitionDate: acquisitionDate, + AcquisitionTime: acquisitionTime, + }; + + if ( + radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime && + radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== undefined && + typeof radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime === "string" + ) { + instanceMetadata.RadiopharmaceuticalStartDateTime = + radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime; + } + + if ( + radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime && + radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== undefined && + typeof radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime !== "string" + ) { + const dateString = convertInterfaceDateToString( + radiopharmaceuticalInfo.radiopharmaceuticalStartDateTime + ); + instanceMetadata.RadiopharmaceuticalStartDateTime = dateString; + } + + if ( + instanceMetadata.AcquisitionDate && + instanceMetadata.AcquisitionDate !== undefined && + typeof instanceMetadata.AcquisitionDate !== "string" + ) { + const dateString = convertInterfaceDateToString( + instanceMetadata.AcquisitionDate + ); + instanceMetadata.AcquisitionDate = dateString; + } + + if ( + instanceMetadata.SeriesDate && + instanceMetadata.SeriesDate !== undefined && + typeof instanceMetadata.SeriesDate !== "string" + ) { + const dateString = convertInterfaceDateToString( + instanceMetadata.SeriesDate + ); + instanceMetadata.SeriesDate = dateString; + } + + if ( + radiopharmaceuticalInfo.radiopharmaceuticalStartTime && + radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== undefined && + typeof radiopharmaceuticalInfo.radiopharmaceuticalStartTime === "string" + ) { + instanceMetadata.RadiopharmaceuticalStartTime = + radiopharmaceuticalInfo.radiopharmaceuticalStartTime; + } + + if ( + radiopharmaceuticalInfo.radiopharmaceuticalStartTime && + radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== undefined && + typeof radiopharmaceuticalInfo.radiopharmaceuticalStartTime !== "string" + ) { + const timeString = convertInterfaceTimeToString( + radiopharmaceuticalInfo.radiopharmaceuticalStartTime + ); + instanceMetadata.RadiopharmaceuticalStartTime = timeString; + } + + if ( + instanceMetadata.AcquisitionTime && + instanceMetadata.AcquisitionTime !== undefined && + typeof instanceMetadata.AcquisitionTime !== "string" + ) { + const timeString = convertInterfaceTimeToString( + instanceMetadata.AcquisitionTime + ); + instanceMetadata.AcquisitionTime = timeString; + } + + if ( + instanceMetadata.SeriesTime && + instanceMetadata.SeriesTime !== undefined && + typeof instanceMetadata.SeriesTime !== "string" + ) { + const timeString = convertInterfaceTimeToString( + instanceMetadata.SeriesTime + ); + instanceMetadata.SeriesTime = timeString; + } + + if ( + ptImageModule.frameReferenceTime && + ptImageModule.frameReferenceTime !== undefined + ) { + instanceMetadata.FrameReferenceTime = ptImageModule.frameReferenceTime; + } + + if ( + ptImageModule.actualFrameDuration && + ptImageModule.actualFrameDuration !== undefined + ) { + instanceMetadata.ActualFrameDuration = ptImageModule.actualFrameDuration; + } + + if ( + patientStudyModule.patientSex && + patientStudyModule.patientSex !== undefined + ) { + instanceMetadata.PatientSex = patientStudyModule.patientSex; + } + + if ( + patientStudyModule.patientSize && + patientStudyModule.patientSize !== undefined + ) { + instanceMetadata.PatientSize = patientStudyModule.patientSize; + } + + // Todo: add private tags + // if ( + // dicomMetaData['70531000'] || + // dicomMetaData['70531000'] !== undefined || + // dicomMetaData['70531009'] || + // dicomMetaData['70531009'] !== undefined + // ) { + // const philipsPETPrivateGroup: PhilipsPETPrivateGroup = { + // SUVScaleFactor: dicomMetaData['70531000'], + // ActivityConcentrationScaleFactor: dicomMetaData['70531009'], + // }; + // instanceMetadata.PhilipsPETPrivateGroup = philipsPETPrivateGroup; + // } + + // if (dicomMetaData['0009100d'] && dicomMetaData['0009100d'] !== undefined) { + // instanceMetadata.GEPrivatePostInjectionDateTime = dicomMetaData['0009100d']; + // } + + return instanceMetadata; +} + +function convertInterfaceTimeToString(time): string { + const hours = `${time.hours || "00"}`.padStart(2, "0"); + const minutes = `${time.minutes || "00"}`.padStart(2, "0"); + const seconds = `${time.seconds || "00"}`.padStart(2, "0"); + + const fractionalSeconds = `${time.fractionalSeconds || "000000"}`.padEnd( + 6, + "0" + ); + + const timeString = `${hours}${minutes}${seconds}.${fractionalSeconds}`; + return timeString; +} + +function convertInterfaceDateToString(date): string { + const month = `${date.month}`.padStart(2, "0"); + const day = `${date.day}`.padStart(2, "0"); + const dateString = `${date.year}${month}${day}`; + return dateString; +} + +export { getPTImageIdInstanceMetadata }; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/getPixelSpacingInformation.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/getPixelSpacingInformation.ts new file mode 100644 index 0000000..9b95062 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/getPixelSpacingInformation.ts @@ -0,0 +1,139 @@ +interface DICOMInstance { + PixelSpacing?: number[]; + ImagerPixelSpacing?: number[]; + SOPClassUID?: string; + PixelSpacingCalibrationType?: string; + PixelSpacingCalibrationDescription?: string; + EstimatedRadiographicMagnificationFactor?: number; + SequenceOfUltrasoundRegions?: { + PhysicalDeltaX: number; + PhysicalDeltaY: number; + }[]; // 根据实际需要调整类型 +} + +interface PixelSpacingResult { + PixelSpacing?: number[]; + type?: string; + isProjection?: boolean; + PixelSpacingCalibrationType?: string; + PixelSpacingCalibrationDescription?: string; +} + +/** + * 获取像素间距信息。 + * 此函数根据 DICOM 实例的不同属性来确定适当的像素间距。 + * + * @param instance - DICOM 实例对象 + * @returns 像素间距信息 + */ +export const getPixelSpacingInformation = ( + instance: DICOMInstance +): PixelSpacingResult | number[] | undefined => { + const projectionRadiographSOPClassUIDs: string[] = [ + "1.2.840.10008.5.1.4.1.1.1", // CR Image Storage + "1.2.840.10008.5.1.4.1.1.1.1", // Digital X-Ray Image Storage – for Presentation + "1.2.840.10008.5.1.4.1.1.1.1.1", // Digital X-Ray Image Storage – for Processing + "1.2.840.10008.5.1.4.1.1.1.2", // Digital Mammography X-Ray Image Storage – for Presentation + "1.2.840.10008.5.1.4.1.1.1.2.1", // Digital Mammography X-Ray Image Storage – for Processing + "1.2.840.10008.5.1.4.1.1.1.3", // Digital Intra – oral X-Ray Image Storage – for Presentation + "1.2.840.10008.5.1.4.1.1.1.3.1", // Digital Intra – oral X-Ray Image Storage – for Processing + "1.2.840.10008.5.1.4.1.1.12.1", // X-Ray Angiographic Image Storage + "1.2.840.10008.5.1.4.1.1.12.1.1", // Enhanced XA Image Storage + "1.2.840.10008.5.1.4.1.1.12.2", // X-Ray Radiofluoroscopic Image Storage + "1.2.840.10008.5.1.4.1.1.12.2.1", // Enhanced XRF Image Storage + "1.2.840.10008.5.1.4.1.1.12.3", // X-Ray Angiographic Bi-plane Image Storage Retired + ]; + + const { + PixelSpacing, + ImagerPixelSpacing, + SOPClassUID, + PixelSpacingCalibrationType, + PixelSpacingCalibrationDescription, + EstimatedRadiographicMagnificationFactor, + SequenceOfUltrasoundRegions, + } = instance; + + const isProjection = SOPClassUID + ? projectionRadiographSOPClassUIDs.includes(SOPClassUID) + : false; + + const TYPES = { + NOT_APPLICABLE: "NOT_APPLICABLE", + UNKNOWN: "UNKNOWN", + CALIBRATED: "CALIBRATED", + DETECTOR: "DETECTOR", + }; + + if (!isProjection) { + return PixelSpacing; + } + + if (isProjection && !ImagerPixelSpacing) { + return { + PixelSpacing, + type: TYPES.UNKNOWN, + isProjection, + }; + } else if ( + PixelSpacing && + ImagerPixelSpacing && + PixelSpacing.join() === ImagerPixelSpacing.join() + ) { + return { + PixelSpacing, + type: TYPES.DETECTOR, + isProjection, + }; + } else if ( + PixelSpacing && + ImagerPixelSpacing && + PixelSpacing.join() !== ImagerPixelSpacing.join() + ) { + return { + PixelSpacing, + type: TYPES.CALIBRATED, + isProjection, + PixelSpacingCalibrationType, + PixelSpacingCalibrationDescription, + }; + } else if (!PixelSpacing && ImagerPixelSpacing) { + let CorrectedImagerPixelSpacing = ImagerPixelSpacing; + if (EstimatedRadiographicMagnificationFactor) { + CorrectedImagerPixelSpacing = ImagerPixelSpacing.map( + (pixelSpacing) => + pixelSpacing / EstimatedRadiographicMagnificationFactor + ); + } else { + console.warn( + "EstimatedRadiographicMagnificationFactor was not present. Unable to correct ImagerPixelSpacing." + ); + } + + return { + PixelSpacing: CorrectedImagerPixelSpacing, + isProjection, + }; + } else if ( + SequenceOfUltrasoundRegions && + Array.isArray(SequenceOfUltrasoundRegions) && + SequenceOfUltrasoundRegions.length > 0 + ) { + const { PhysicalDeltaX, PhysicalDeltaY } = SequenceOfUltrasoundRegions[0]; + const USPixelSpacing = [PhysicalDeltaX * 10, PhysicalDeltaY * 10]; + + return { + PixelSpacing: USPixelSpacing, + }; + } else if (isProjection && !ImagerPixelSpacing) { + return { + PixelSpacing, + type: TYPES.NOT_APPLICABLE, + isProjection, + }; + } + + console.warn( + "Unknown combination of PixelSpacing and ImagerPixelSpacing identified. Unable to determine spacing." + ); +}; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/init.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/init.ts new file mode 100644 index 0000000..ac5fbcd --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/init.ts @@ -0,0 +1,10 @@ +import { initCornerstoneDICOMImageLoader } from "./initCornerstoneDicomImageLoader"; +import initVolumeLoader from "./initVolumeLoader"; +import { init as csRenderInit } from "@cornerstonejs/core"; + +// 入口 +export const initCornerstone = async () => { + initCornerstoneDICOMImageLoader(); + initVolumeLoader(); + await csRenderInit(); +}; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initCornerstoneDicomImageLoader.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initCornerstoneDicomImageLoader.ts new file mode 100644 index 0000000..da17d5d --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initCornerstoneDicomImageLoader.ts @@ -0,0 +1,46 @@ +import dicomParser from "dicom-parser"; +import * as cornerstone from "@cornerstonejs/core"; +import cornerstoneDICOMImageLoader from "@cornerstonejs/dicom-image-loader"; + +window.cornerstone = cornerstone; + +export const initCornerstoneDICOMImageLoader = () => { + const { preferSizeOverAccuracy, useNorm16Texture } = + cornerstone.getConfiguration().rendering; + + cornerstone.setConfiguration({ + detectGPUConfig: { + benchmarksURL: "http://localhost:9000", + }, + rendering: cornerstone.getConfiguration().rendering, + }); + + cornerstoneDICOMImageLoader.external.cornerstone = cornerstone; + cornerstoneDICOMImageLoader.external.dicomParser = dicomParser; + cornerstoneDICOMImageLoader.configure({ + useWebWorkers: true, + decodeConfig: { + convertFloatPixelDataToInt: false, + use16BitDataType: preferSizeOverAccuracy || useNorm16Texture, + }, + }); + + let maxWebWorkers = 1; + + if (navigator.hardwareConcurrency) { + maxWebWorkers = Math.min(navigator.hardwareConcurrency, 7); + } + + const config = { + maxWebWorkers, + startWebWorkersOnDemand: false, + taskConfiguration: { + decodeTask: { + initializeCodecsOnStartup: false, + strict: false, + }, + }, + }; + + cornerstoneDICOMImageLoader.webWorkerManager.initialize(config); +}; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initProviders.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initProviders.ts new file mode 100644 index 0000000..2007b62 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initProviders.ts @@ -0,0 +1,17 @@ +import * as cornerstone from "@cornerstonejs/core"; +import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider"; + +const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities; + +export default function initProviders() { + cornerstone.metaData.addProvider( + ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider), + 10000 + ); + cornerstone.metaData.addProvider( + calibratedPixelSpacingMetadataProvider.get.bind( + calibratedPixelSpacingMetadataProvider + ), + 11000 + ); +} diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initVolumeLoader.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initVolumeLoader.ts new file mode 100644 index 0000000..09ce61f --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/initVolumeLoader.ts @@ -0,0 +1,19 @@ +import { volumeLoader } from "@cornerstonejs/core"; +import { + cornerstoneStreamingImageVolumeLoader, + cornerstoneStreamingDynamicImageVolumeLoader, +} from "@cornerstonejs/streaming-image-volume-loader"; + +export default function initVolumeLoader() { + volumeLoader.registerUnknownVolumeLoader( + cornerstoneStreamingImageVolumeLoader + ); + volumeLoader.registerVolumeLoader( + "cornerstoneStreamingImageVolume", + cornerstoneStreamingImageVolumeLoader + ); + volumeLoader.registerVolumeLoader( + "cornerstoneStreamingDynamicImageVolume", + cornerstoneStreamingDynamicImageVolumeLoader + ); +} diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/ptScalingMetaDataProvider.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/ptScalingMetaDataProvider.ts new file mode 100644 index 0000000..3cb5d81 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/ptScalingMetaDataProvider.ts @@ -0,0 +1,17 @@ +import { utilities as csUtils } from "@cornerstonejs/core"; + +const scalingPerImageId = {}; + +function addInstance(imageId, scalingMetaData) { + const imageURI = csUtils.imageIdToURI(imageId); + scalingPerImageId[imageURI] = scalingMetaData; +} + +function get(type, imageId) { + if (type === "scalingModule") { + const imageURI = csUtils.imageIdToURI(imageId); + return scalingPerImageId[imageURI]; + } +} + +export default { addInstance, get }; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/removeInvalidTags.ts b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/removeInvalidTags.ts new file mode 100644 index 0000000..5e7d8ae --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/CornerstoneDicomLoader/removeInvalidTags.ts @@ -0,0 +1,33 @@ +/** + * Removes invalid tags from a metadata object and returns a new object. + * + * This function currently removes tags that have `null` or `undefined` values. + * Removing these values is important to prevent errors when processing + * the metadata, such as when calling `naturalizeDataset(...)`. + * + * The performance of this function has been considered. Validating each + * tag ID with a regex significantly reduces the function's speed, so this + * approach is avoided. The function is designed to be efficient, with an + * average runtime of around +12ms per 1000 images, though this can vary + * depending on the machine. + * + * @param srcMetadata - The source metadata object containing the tags. + * @returns A new metadata object with invalid tags removed. + */ +export const removeInvalidTags = ( + srcMetadata: Record +): Record => { + const dstMetadata: Record = Object.create(null); + const tagIds = Object.keys(srcMetadata); + let tagValue: any; + + tagIds.forEach((tagId) => { + tagValue = srcMetadata[tagId]; + + if (tagValue !== undefined && tagValue !== null) { + dstMetadata[tagId] = tagValue; + } + }); + + return dstMetadata; +}; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/Crosshair.tsx b/apps/desktop/src/pages/Datasource/MprViewer/Crosshair.tsx new file mode 100644 index 0000000..7771914 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/Crosshair.tsx @@ -0,0 +1,246 @@ +import { useEffect, useRef } from "react"; +import initDemo from "./util/initDemo.js"; +import { + RenderingEngine, + Types, + Enums, + setVolumesForViewports, + volumeLoader, + getRenderingEngine, +} from "@cornerstonejs/core"; +import * as cornerstoneTools from "@cornerstonejs/tools"; +import createImageIdsAndCacheMetaData from "./util/createImageIdsAndCacheMetaData"; +import { PublicViewportInput } from "@cornerstonejs/core/dist/types/types/IViewport.js"; +import setCtTransferFunctionForVolumeActor from "./util/setCtTransferFunctionForVolumeActor"; +import * as cornerstone from "@cornerstonejs/core"; + +const { + ToolGroupManager, + Enums: csToolsEnums, + CrosshairsTool, + StackScrollMouseWheelTool, +} = cornerstoneTools; + +const { ViewportType } = Enums; + +interface CrosshairMprProps { + children?: JSX.Element; +} + +const viewportId1 = "CT_AXIAL"; +const viewportId2 = "CT_SAGITTAL"; +const viewportId3 = "CT_CORONAL"; +const toolGroupId = "group"; + +const viewportColors = { + [viewportId1]: "rgb(200, 0, 0)", + [viewportId2]: "rgb(200, 200, 0)", + [viewportId3]: "rgb(0, 200, 0)", +}; + +const viewportReferenceLineControllable = [ + viewportId1, + viewportId2, + viewportId3, +]; + +const viewportReferenceLineDraggableRotatable = [ + viewportId1, + viewportId2, + viewportId3, +]; + +const viewportReferenceLineSlabThicknessControlsOn = [ + viewportId1, + viewportId2, + viewportId3, +]; + +// Define a unique id for the volume +const volumeName = "CT_VOLUME_ID"; // Id of the volume less loader prefix +const volumeLoaderScheme = "cornerstoneStreamingImageVolume"; // Loader id which defines which volume loader to use +const volumeId = `${volumeLoaderScheme}:${volumeName}`; // VolumeId with loader id + volume id + +function getReferenceLineColor(viewportId) { + return viewportColors[viewportId]; +} + +function getReferenceLineControllable(viewportId) { + const index = viewportReferenceLineControllable.indexOf(viewportId); + return index !== -1; +} + +function getReferenceLineDraggableRotatable(viewportId) { + const index = viewportReferenceLineDraggableRotatable.indexOf(viewportId); + return index !== -1; +} + +function getReferenceLineSlabThicknessControlsOn(viewportId) { + const index = + viewportReferenceLineSlabThicknessControlsOn.indexOf(viewportId); + return index !== -1; +} + +const renderingEngineId = "myRenderingEngine"; + +interface CrosshairMprProps { + // StudyInstanceUID: string; + // SeriesInstanceUID: string; +} + +export const CrosshairMpr = (props: CrosshairMprProps) => { + const viewportId1Ref = useRef(null); + const viewportId2Ref = useRef(null); + const viewportId3Ref = useRef(null); + const renderingEngine = useRef(); + const imageIds = useRef(); + + const run = async () => { + initDemo(); + + // Get Cornerstone imageIds for the source data and fetch metadata into RAM + imageIds.current = await createImageIdsAndCacheMetaData({ + StudyInstanceUID: + "1.2.840.113564.118796721496052.50228.637325565454648183.8", + SeriesInstanceUID: + "1.3.12.2.1107.5.1.4.73399.30000020080900171669200001479", + wadoRsRoot: "http://localhost:8042/dicom-web", + }); + + // Define a volume in memory + const volume = await volumeLoader.createAndCacheVolume(volumeId, { + imageIds: imageIds.current ?? [], + }); + + // Instantiate a rendering engine + renderingEngine.current = new RenderingEngine(renderingEngineId); + + // Create the viewports + const viewportInputArray: PublicViewportInput[] = [ + { + viewportId: viewportId1, + type: ViewportType.ORTHOGRAPHIC, + element: viewportId1Ref.current!, + defaultOptions: { + orientation: Enums.OrientationAxis.AXIAL, + background: [0, 0, 0], + }, + }, + { + viewportId: viewportId2, + type: ViewportType.ORTHOGRAPHIC, + element: viewportId2Ref.current!, + defaultOptions: { + orientation: Enums.OrientationAxis.SAGITTAL, + background: [0, 0, 0], + }, + }, + { + viewportId: viewportId3, + type: ViewportType.ORTHOGRAPHIC, + element: viewportId3Ref.current!, + defaultOptions: { + orientation: Enums.OrientationAxis.CORONAL, + background: [0, 0, 0], + }, + }, + ]; + + renderingEngine.current.setViewports(viewportInputArray); + + console.log(volume); + + // Set the volume to load + volume.load(); + + // Set volumes on the viewports + await setVolumesForViewports( + renderingEngine.current, + [ + { + volumeId, + callback: setCtTransferFunctionForVolumeActor, + }, + ], + [viewportId1, viewportId2, viewportId3] + ); + + // Define tool groups to add the segmentation display tool to + const toolGroup = ToolGroupManager.createToolGroup(toolGroupId); + + if (toolGroup) { + // For the crosshairs to operate, the viewports must currently be + // added ahead of setting the tool active. This will be improved in the future. + toolGroup.addViewport(viewportId1, renderingEngineId); + toolGroup.addViewport(viewportId2, renderingEngineId); + toolGroup.addViewport(viewportId3, renderingEngineId); + + // Manipulation Tools + toolGroup.addTool(StackScrollMouseWheelTool.toolName); + // Add Crosshairs tool and configure it to link the three viewports + // These viewports could use different tool groups. See the PET-CT example + // for a more complicated used case. + + toolGroup.addTool(CrosshairsTool.toolName, { + getReferenceLineColor, + getReferenceLineControllable, + getReferenceLineDraggableRotatable, + getReferenceLineSlabThicknessControlsOn, + }); + + toolGroup.setToolActive(CrosshairsTool.toolName, { + bindings: [{ mouseButton: 1 }], + }); + // As the Stack Scroll mouse wheel is a tool using the `mouseWheelCallback` + // hook instead of mouse buttons, it does not need to assign any mouse button. + toolGroup.setToolActive(StackScrollMouseWheelTool.toolName); + } + + renderingEngine.current.renderViewports([ + viewportId1, + viewportId2, + viewportId3, + ]); + }; + + useEffect(() => { + run(); + cornerstoneTools.addTool(StackScrollMouseWheelTool); + cornerstoneTools.addTool(CrosshairsTool); + + return () => { + // TODO: 是否需要写在组件，根据页面需要 + console.log("卸载tool2"); + cornerstoneTools.removeTool(StackScrollMouseWheelTool); + cornerstoneTools.removeTool(CrosshairsTool); + }; + }, []); + + useEffect(() => { + window.addEventListener("resize", () => { + renderingEngine.current?.resize(); + }); + }, []); + + const test = () => { + // console.log(volumeLoader) + console.log(cornerstone.cache.getVolume(volumeId).getScalarData()); + }; + + useEffect(() => { + document.addEventListener(Enums.Events.VOLUME_CACHE_VOLUME_ADDED, () => { + console.log(111); + }); + }, []); + + return ( +
+
+
+
+
+
+ +
+ ); +}; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/index.tsx b/apps/desktop/src/pages/Datasource/MprViewer/index.tsx new file mode 100644 index 0000000..b23ee89 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/index.tsx @@ -0,0 +1,20 @@ +import { useEffect } from "react"; +import { SeriesInfo } from "../type"; +import { CrosshairMpr } from "./Crosshair"; + +interface MprViewerProps { + series?: SeriesInfo; +} + +function MprViewer(props: MprViewerProps) { + useEffect(() => { + if (props.series) console.log(props.series); + }, [props.series]); + return ( +
+ +
+ ); +} + +export default MprViewer; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/convertMultiframeImageIds.js b/apps/desktop/src/pages/Datasource/MprViewer/util/convertMultiframeImageIds.js new file mode 100644 index 0000000..8f2c333 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/convertMultiframeImageIds.js @@ -0,0 +1,65 @@ +import { metaData } from '@cornerstonejs/core'; +import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader'; +/** + * preloads imageIds metadata in memory + **/ +async function prefetchMetadataInformation(imageIdsToPrefetch) { + for (let i = 0; i < imageIdsToPrefetch.length; i++) { + await cornerstoneDICOMImageLoader.wadouri.loadImage(imageIdsToPrefetch[i]) + .promise; + } +} + +function getFrameInformation(imageId) { + if (imageId.includes('wadors:')) { + const frameIndex = imageId.indexOf('/frames/'); + const imageIdFrameless = + frameIndex > 0 ? imageId.slice(0, frameIndex + 8) : imageId; + return { + frameIndex, + imageIdFrameless, + }; + } else { + const frameIndex = imageId.indexOf('&frame='); + let imageIdFrameless = + frameIndex > 0 ? imageId.slice(0, frameIndex + 7) : imageId; + if (!imageIdFrameless.includes('&frame=')) { + imageIdFrameless = imageIdFrameless + '&frame='; + } + return { + frameIndex, + imageIdFrameless, + }; + } +} +/** + * Receives a list of imageids possibly referring to multiframe dicom images + * and returns a list of imageid where each imageid referes to one frame. + * For each imageId representing a multiframe image with n frames, + * it will create n new imageids, one for each frame, and returns the new list of imageids + * If a particular imageid no refer to a mutiframe image data, it will be just copied into the new list + * @returns new list of imageids where each imageid represents a frame + */ +function convertMultiframeImageIds(imageIds) { + const newImageIds = []; + imageIds.forEach((imageId) => { + const { imageIdFrameless } = getFrameInformation(imageId); + const instanceMetaData = metaData.get('multiframeModule', imageId); + if ( + instanceMetaData && + instanceMetaData.NumberOfFrames && + instanceMetaData.NumberOfFrames > 1 + ) { + const NumberOfFrames = instanceMetaData.NumberOfFrames; + for (let i = 0; i < NumberOfFrames; i++) { + const newImageId = imageIdFrameless + (i + 1); + newImageIds.push(newImageId); + } + } else { + newImageIds.push(imageId); + } + }); + return newImageIds; +} + +export { convertMultiframeImageIds, prefetchMetadataInformation }; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/createImageIdsAndCacheMetaData.js b/apps/desktop/src/pages/Datasource/MprViewer/util/createImageIdsAndCacheMetaData.js new file mode 100644 index 0000000..4c7852c --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/createImageIdsAndCacheMetaData.js @@ -0,0 +1,101 @@ +import { api } from 'dicomweb-client'; +import dcmjs from 'dcmjs'; +import { utilities } from '@cornerstonejs/core'; +import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader'; +import getPixelSpacingInformation from './getPixelSpacingInformation'; +import { convertMultiframeImageIds } from './convertMultiframeImageIds'; +import removeInvalidTags from './removeInvalidTags'; + +const { DicomMetaDictionary } = dcmjs.data; +const { calibratedPixelSpacingMetadataProvider } = utilities; + +/** +/** + * Uses dicomweb-client to fetch metadata of a study, cache it in cornerstone, + * and return a list of imageIds for the frames. + * + * Uses the app config to choose which study to fetch, and which + * dicom-web server to fetch it from. + * + * @returns {string[]} An array of imageIds for instances in the study. + */ + +export default async function createImageIdsAndCacheMetaData({ + StudyInstanceUID, + SeriesInstanceUID, + SOPInstanceUID = null, + wadoRsRoot, + client = null, +}) { + const SOP_INSTANCE_UID = '00080018'; + const SERIES_INSTANCE_UID = '0020000E'; + const MODALITY = '00080060'; + + const studySearchOptions = { + studyInstanceUID: StudyInstanceUID, + seriesInstanceUID: SeriesInstanceUID, + }; + + client = client || new api.DICOMwebClient({ url: wadoRsRoot }); + let instances = await client.retrieveSeriesMetadata(studySearchOptions); + + // if sop instance is provided we should filter the instances to only include the one we want + if (SOPInstanceUID) { + instances = instances.filter((instance) => { + return instance[SOP_INSTANCE_UID].Value[0] === SOPInstanceUID; + }); + } + + const modality = instances[0][MODALITY].Value[0]; + let imageIds = instances.map((instanceMetaData) => { + const SeriesInstanceUID = instanceMetaData[SERIES_INSTANCE_UID].Value[0]; + const SOPInstanceUIDToUse = + SOPInstanceUID || instanceMetaData[SOP_INSTANCE_UID].Value[0]; + + const prefix = 'wadors:'; + + const imageId = + prefix + + wadoRsRoot + + '/studies/' + + StudyInstanceUID + + '/series/' + + SeriesInstanceUID + + '/instances/' + + SOPInstanceUIDToUse + + '/frames/1'; + + cornerstoneDICOMImageLoader.wadors.metaDataManager.add( + imageId, + instanceMetaData + ); + return imageId; + }); + + // if the image ids represent multiframe information, creates a new list with one image id per frame + // if not multiframe data available, just returns the same list given + imageIds = convertMultiframeImageIds(imageIds); + + imageIds.forEach((imageId) => { + let instanceMetaData = + cornerstoneDICOMImageLoader.wadors.metaDataManager.get(imageId); + + // It was using JSON.parse(JSON.stringify(...)) before but it is 8x slower + instanceMetaData = removeInvalidTags(instanceMetaData); + + if (instanceMetaData) { + // Add calibrated pixel spacing + const metadata = DicomMetaDictionary.naturalizeDataset(instanceMetaData); + const pixelSpacing = getPixelSpacingInformation(metadata); + + if (pixelSpacing) { + calibratedPixelSpacingMetadataProvider.add(imageId, { + rowPixelSpacing: parseFloat(pixelSpacing[0]), + columnPixelSpacing: parseFloat(pixelSpacing[1]), + }); + } + } + }); + + return imageIds; +} diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/getPixelSpacingInformation.js b/apps/desktop/src/pages/Datasource/MprViewer/util/getPixelSpacingInformation.js new file mode 100644 index 0000000..5ddcde5 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/getPixelSpacingInformation.js @@ -0,0 +1,136 @@ +// See https://github.com/OHIF/Viewers/blob/94a9067fe3d291d30e25a1bda5913511388edea2/platform/core/src/utils/metadataProvider/getPixelSpacingInformation.js + +export default function getPixelSpacingInformation(instance) { + // See http://gdcm.sourceforge.net/wiki/index.php/Imager_Pixel_Spacing + + // TODO: Add Ultrasound region spacing + // TODO: Add manual calibration + + // TODO: Use ENUMS from dcmjs + const projectionRadiographSOPClassUIDs = [ + '1.2.840.10008.5.1.4.1.1.1', // CR Image Storage + '1.2.840.10008.5.1.4.1.1.1.1', // Digital X-Ray Image Storage – for Presentation + '1.2.840.10008.5.1.4.1.1.1.1.1', // Digital X-Ray Image Storage – for Processing + '1.2.840.10008.5.1.4.1.1.1.2', // Digital Mammography X-Ray Image Storage – for Presentation + '1.2.840.10008.5.1.4.1.1.1.2.1', // Digital Mammography X-Ray Image Storage – for Processing + '1.2.840.10008.5.1.4.1.1.1.3', // Digital Intra – oral X-Ray Image Storage – for Presentation + '1.2.840.10008.5.1.4.1.1.1.3.1', // Digital Intra – oral X-Ray Image Storage – for Processing + '1.2.840.10008.5.1.4.1.1.12.1', // X-Ray Angiographic Image Storage + '1.2.840.10008.5.1.4.1.1.12.1.1', // Enhanced XA Image Storage + '1.2.840.10008.5.1.4.1.1.12.2', // X-Ray Radiofluoroscopic Image Storage + '1.2.840.10008.5.1.4.1.1.12.2.1', // Enhanced XRF Image Storage + '1.2.840.10008.5.1.4.1.1.12.3', // X-Ray Angiographic Bi-plane Image Storage Retired + ]; + + const { + PixelSpacing, + ImagerPixelSpacing, + SOPClassUID, + PixelSpacingCalibrationType, + PixelSpacingCalibrationDescription, + EstimatedRadiographicMagnificationFactor, + SequenceOfUltrasoundRegions, + } = instance; + + const isProjection = projectionRadiographSOPClassUIDs.includes(SOPClassUID); + + const TYPES = { + NOT_APPLICABLE: 'NOT_APPLICABLE', + UNKNOWN: 'UNKNOWN', + CALIBRATED: 'CALIBRATED', + DETECTOR: 'DETECTOR', + }; + + if (!isProjection) { + return PixelSpacing; + } + + if (isProjection && !ImagerPixelSpacing) { + // If only Pixel Spacing is present, and this is a projection radiograph, + // PixelSpacing should be used, but the user should be informed that + // what it means is unknown + return { + PixelSpacing, + type: TYPES.UNKNOWN, + isProjection, + }; + } else if ( + PixelSpacing && + ImagerPixelSpacing && + PixelSpacing === ImagerPixelSpacing + ) { + // If Imager Pixel Spacing and Pixel Spacing are present and they have the same values, + // then the user should be informed that the measurements are at the detector plane + return { + PixelSpacing, + type: TYPES.DETECTOR, + isProjection, + }; + } else if ( + PixelSpacing && + ImagerPixelSpacing && + PixelSpacing !== ImagerPixelSpacing + ) { + // If Imager Pixel Spacing and Pixel Spacing are present and they have different values, + // then the user should be informed that these are "calibrated" + // (in some unknown manner if Pixel Spacing Calibration Type and/or + // Pixel Spacing Calibration Description are absent) + return { + PixelSpacing, + type: TYPES.CALIBRATED, + isProjection, + PixelSpacingCalibrationType, + PixelSpacingCalibrationDescription, + }; + } else if (!PixelSpacing && ImagerPixelSpacing) { + let CorrectedImagerPixelSpacing = ImagerPixelSpacing; + if (EstimatedRadiographicMagnificationFactor) { + // Note that in IHE Mammo profile compliant displays, the value of Imager Pixel Spacing is required to be corrected by + // Estimated Radiographic Magnification Factor and the user informed of that. + // TODO: should this correction be done before all of this logic? + CorrectedImagerPixelSpacing = ImagerPixelSpacing.map( + (pixelSpacing) => + pixelSpacing / EstimatedRadiographicMagnificationFactor + ); + } else { + console.warn( + 'EstimatedRadiographicMagnificationFactor was not present. Unable to correct ImagerPixelSpacing.' + ); + } + + return { + PixelSpacing: CorrectedImagerPixelSpacing, + isProjection, + }; + } else if ( + SequenceOfUltrasoundRegions && + typeof SequenceOfUltrasoundRegions === 'object' + ) { + const { PhysicalDeltaX, PhysicalDeltaY } = SequenceOfUltrasoundRegions; + const USPixelSpacing = [PhysicalDeltaX * 10, PhysicalDeltaY * 10]; + + return { + PixelSpacing: USPixelSpacing, + }; + } else if ( + SequenceOfUltrasoundRegions && + Array.isArray(SequenceOfUltrasoundRegions) && + SequenceOfUltrasoundRegions.length > 1 + ) { + console.warn( + 'Sequence of Ultrasound Regions > one entry. This is not yet implemented, all measurements will be shown in pixels.' + ); + } else if (isProjection === false && !ImagerPixelSpacing) { + // If only Pixel Spacing is present, and this is not a projection radiograph, + // we can stop here + return { + PixelSpacing, + type: TYPES.NOT_APPLICABLE, + isProjection, + }; + } + + console.warn( + 'Unknown combination of PixelSpacing and ImagerPixelSpacing identified. Unable to determine spacing.' + ); +} diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/initCornerstoneDICOMImageLoader.js b/apps/desktop/src/pages/Datasource/MprViewer/util/initCornerstoneDICOMImageLoader.js new file mode 100644 index 0000000..d6ef6b8 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/initCornerstoneDICOMImageLoader.js @@ -0,0 +1,41 @@ +import dicomParser from 'dicom-parser'; +import * as cornerstone from '@cornerstonejs/core'; +import * as cornerstoneTools from '@cornerstonejs/tools'; +import cornerstoneDICOMImageLoader from '@cornerstonejs/dicom-image-loader'; + +window.cornerstone = cornerstone; +window.cornerstoneTools = cornerstoneTools; +const { preferSizeOverAccuracy, useNorm16Texture } = + cornerstone.getConfiguration().rendering; + +export default function initCornerstoneDICOMImageLoader() { + // TODO: 此处非常的蛇皮 + cornerstone.setUseSharedArrayBuffer(false) + cornerstone.setConfiguration({ + detectGPUConfig: { + // benchmarksURL: "http://localhost:9000" + } + }) + cornerstoneDICOMImageLoader.external.cornerstone = cornerstone; + cornerstoneDICOMImageLoader.external.dicomParser = dicomParser; + cornerstoneDICOMImageLoader.configure({ + useWebWorkers: true, + decodeConfig: { + convertFloatPixelDataToInt: false, + use16BitDataType: preferSizeOverAccuracy || useNorm16Texture, + }, + }); + + const config = { + maxWebWorkers: navigator.hardwareConcurrency ? Math.min(navigator.hardwareConcurrency, 7) : 1, + startWebWorkersOnDemand: false, + taskConfiguration: { + decodeTask: { + initializeCodecsOnStartup: false, + strict: false, + }, + }, + }; + + cornerstoneDICOMImageLoader.webWorkerManager.initialize(config); +} diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/initDemo.js b/apps/desktop/src/pages/Datasource/MprViewer/util/initDemo.js new file mode 100644 index 0000000..ec5eb4e --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/initDemo.js @@ -0,0 +1,13 @@ +import initProviders from './initProviders.js'; +import initCornerstoneDICOMImageLoader from './initCornerstoneDICOMImageLoader'; +import initVolumeLoader from './initVolumeLoader'; +import { init as csRenderInit } from '@cornerstonejs/core'; +import { init as csToolsInit } from '@cornerstonejs/tools'; + +export default async function initDemo() { + initProviders(); + initCornerstoneDICOMImageLoader(); + initVolumeLoader(); + await csRenderInit(); + await csToolsInit(); +} \ No newline at end of file diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/initProviders.js b/apps/desktop/src/pages/Datasource/MprViewer/util/initProviders.js new file mode 100644 index 0000000..3d12f3f --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/initProviders.js @@ -0,0 +1,17 @@ +import * as cornerstone from '@cornerstonejs/core'; +import ptScalingMetaDataProvider from './ptScalingMetaDataProvider'; + +const { calibratedPixelSpacingMetadataProvider } = cornerstone.utilities; + +export default function initProviders() { + cornerstone.metaData.addProvider( + ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider), + 10000 + ); + cornerstone.metaData.addProvider( + calibratedPixelSpacingMetadataProvider.get.bind( + calibratedPixelSpacingMetadataProvider + ), + 11000 + ); +} diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/initVolumeLoader.js b/apps/desktop/src/pages/Datasource/MprViewer/util/initVolumeLoader.js new file mode 100644 index 0000000..22a81d6 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/initVolumeLoader.js @@ -0,0 +1,19 @@ +import { volumeLoader } from '@cornerstonejs/core'; +import { + cornerstoneStreamingImageVolumeLoader, + cornerstoneStreamingDynamicImageVolumeLoader, +} from '@cornerstonejs/streaming-image-volume-loader'; + +export default function initVolumeLoader() { + volumeLoader.registerUnknownVolumeLoader( + cornerstoneStreamingImageVolumeLoader + ); + volumeLoader.registerVolumeLoader( + 'cornerstoneStreamingImageVolume', + cornerstoneStreamingImageVolumeLoader + ); + volumeLoader.registerVolumeLoader( + 'cornerstoneStreamingDynamicImageVolume', + cornerstoneStreamingDynamicImageVolumeLoader + ); +} diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/ptScalingMetaDataProvider.js b/apps/desktop/src/pages/Datasource/MprViewer/util/ptScalingMetaDataProvider.js new file mode 100644 index 0000000..52fa9c8 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/ptScalingMetaDataProvider.js @@ -0,0 +1,17 @@ +import { utilities as csUtils } from '@cornerstonejs/core'; + +const scalingPerImageId = {}; + +function addInstance(imageId, scalingMetaData) { + const imageURI = csUtils.imageIdToURI(imageId); + scalingPerImageId[imageURI] = scalingMetaData; +} + +function get(type, imageId) { + if (type === 'scalingModule') { + const imageURI = csUtils.imageIdToURI(imageId); + return scalingPerImageId[imageURI]; + } +} + +export default { addInstance, get }; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/removeInvalidTags.js b/apps/desktop/src/pages/Datasource/MprViewer/util/removeInvalidTags.js new file mode 100644 index 0000000..abf7652 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/removeInvalidTags.js @@ -0,0 +1,33 @@ +/** + * Remove invalid tags from a metadata and return a new object. + * + * At this time it is only removing tags that has `null` or `undefined` values + * which is our main goal because that breaks when `naturalizeDataset(...)` is + * called. + * + * Validating the tag id using regex like /^[a-fA-F0-9]{8}$/ make it run + * +50% slower and looping through all characteres (split+every+Set or simple + * FOR+Set) double the time it takes to run. It is currently taking +12ms/1k + * images on average which can change depending on the machine. + * + * @param srcMetadata - source metadata + * @returns new metadata object without invalid tags + */ +function removeInvalidTags(srcMetadata) { + // Object.create(null) make it ~9% faster + const dstMetadata = Object.create(null); + const tagIds = Object.keys(srcMetadata); + let tagValue; + + tagIds.forEach((tagId) => { + tagValue = srcMetadata[tagId]; + + if (tagValue !== undefined && tagValue !== null) { + dstMetadata[tagId] = tagValue; + } + }); + + return dstMetadata; +} + +export { removeInvalidTags as default, removeInvalidTags }; diff --git a/apps/desktop/src/pages/Datasource/MprViewer/util/setCtTransferFunctionForVolumeActor.js b/apps/desktop/src/pages/Datasource/MprViewer/util/setCtTransferFunctionForVolumeActor.js new file mode 100644 index 0000000..acc9ab9 --- /dev/null +++ b/apps/desktop/src/pages/Datasource/MprViewer/util/setCtTransferFunctionForVolumeActor.js @@ -0,0 +1,16 @@ +const windowWidth = 400; +const windowCenter = 40; + +const lower = windowCenter - windowWidth / 2.0; +const upper = windowCenter + windowWidth / 2.0; + +const ctVoiRange = { lower, upper }; + +export default function setCtTransferFunctionForVolumeActor({ volumeActor }) { + volumeActor + .getProperty() + .getRGBTransferFunction(0) + .setMappingRange(lower, upper); +} + +export { ctVoiRange }; diff --git a/apps/desktop/src/pages/Datasource/index.tsx b/apps/desktop/src/pages/Datasource/index.tsx index 9c721be..8b562bc 100644 --- a/apps/desktop/src/pages/Datasource/index.tsx +++ b/apps/desktop/src/pages/Datasource/index.tsx @@ -1,4 +1,4 @@ -import { useEffect, useState } from "react"; +import { useEffect, useRef, useState } from "react"; import { motion } from "framer-motion"; import { ResizableHandle, @@ -9,22 +9,52 @@ import { ScrollArea } from "@/components/ui/scroll-area"; import { Card } from "@/components/ui/card"; import { PatientInfo, SeriesInfo } from "./type"; import { CarouselAction, CarouselSeries } from "./CarouselSeries"; +import { Input } from "@/components/ui/input"; +import { Search } from "lucide-react"; +import MprViewer from "./MprViewer"; export const Datasource = () => { + const rawPatientsRef = useRef([]); const [patients, setPatients] = useState([]); + const [activeSeries, setActiveSeries] = useState(); useEffect(() => { window.ipcRenderer .invoke("dicom:select") .then((patients: PatientInfo[]) => { console.log(patients); - setPatients(patients.map((p) => ({ ...p, active: false, children: p.children.map(s => ({ ...s, active: false })) }))); + rawPatientsRef.current = patients; + setPatients( + patients.map((p) => ({ + ...p, + active: false, + children: p.children.map((s) => ({ ...s, active: false })), + })) + ); }); }, []); const onClickSeriesItem = (series: SeriesInfo, action: CarouselAction) => { - console.log(action, series) - } + console.log(action, series); + switch (action) { + case "viewMpr": + setActiveSeries(series); + break; + default: + break; + } + }; + + const handlePatientSearch = (filterValue: string) => { + const raw = rawPatientsRef.current; + setPatients( + raw.filter((p) => + p.MainDicomTags.PatientName.toUpperCase().includes( + filterValue.toUpperCase() + ) + ) + ); + }; return ( {
-
+
+
+
+ + handlePatientSearch(e.target.value)} + className="pl-8" + /> +
+
-
+
{patients.map((patient) => ( { p.map((i) => ({ ...i, active: i.ID === patient.ID })) ) } - className={`flex shadow-none flex-col items-start gap-2 rounded-lg border p-3 text-left text-sm transition-all hover:bg-accent hover:cursor-pointer ${patient.active ? "bg-accent" : "" - }`} + className={`flex shadow-none flex-col items-start gap-2 rounded-lg border p-3 text-left text-sm transition-all hover:bg-accent hover:cursor-pointer ${ + patient.active ? "bg-accent" : "" + }`} >
@@ -80,45 +121,61 @@ export const Datasource = () => {
- {patients.find(p => p.active) && patients.find(p => p.active)?.children.map(study => - setPatients((p) => - p.map((i) => ({ ...i, children: i.children.map(s => ({ ...s, active: s.ID === study.ID })) })) - ) - } - className={`flex shadow-none flex-col items-start gap-2 rounded-lg border p-3 text-left text-sm transition-all hover:bg-accent hover:cursor-pointer ${study.active ? "bg-accent" : ""}`} - > -
-
-
-
- {study.MainDicomTags.StudyID} -
-
-
- {study.MainDicomTags.StudyDate} -
-
-
-
- {study.MainDicomTags.InstitutionName} -
-
- -
- )} +
+ {patients.find((p) => p.active) && + patients + .find((p) => p.active) + ?.children.map((study) => ( + + setPatients((p) => + p.map((i) => ({ + ...i, + children: i.children.map((s) => ({ + ...s, + active: s.ID === study.ID, + })), + })) + ) + } + className={`flex shadow-none flex-col items-start gap-2 rounded-lg border p-3 text-left text-sm transition-all hover:bg-accent hover:cursor-pointer ${ + study.active ? "bg-accent" : "" + }`} + > +
+
+
+
+ {study.MainDicomTags.StudyID ?? "无"} +
+
+
+ {study.MainDicomTags.StudyDate} +
+
+
+
+ {study.MainDicomTags.InstitutionName} +
+
+ +
+ + ))} +
-
- 123 -
+
- + ); }; diff --git a/apps/desktop/src/pages/Datasource/type.ts b/apps/desktop/src/pages/Datasource/type.ts index 8ca4f96..4d751fa 100644 --- a/apps/desktop/src/pages/Datasource/type.ts +++ b/apps/desktop/src/pages/Datasource/type.ts @@ -11,7 +11,7 @@ export interface PatientInfo { Studies: string[]; Type: string; children: StudyInfo[]; - active: boolean + active: boolean; } export interface StudyInfo { @@ -23,12 +23,12 @@ export interface StudyInfo { StudyID: string; StudyInstanceUID: string; StudyTime: string; - InstitutionName: string + InstitutionName: string; }; ParentPatient: string; Series: string[]; Type: string; - active: boolean + active: boolean; children: SeriesInfo[]; } @@ -46,11 +46,11 @@ export interface SeriesInfo { SeriesInstanceUID: string; // 成像系列的唯一标识符 SeriesNumber: number; // 成像系列的编号 SeriesTime: string; // 成像系列的具体时间 - SeriesDescription: string // 描述 - BodyPartExamined: string // 检查的身体部位 - ProtocolName: string // 成像协议 - StationName: string // 成像操作的设备站点 - } + SeriesDescription: string; // 描述 + BodyPartExamined: string; // 检查的身体部位 + ProtocolName: string; // 成像协议 + StationName: string; // 成像操作的设备站点 + }; ParentStudy: string; Status: string; Type: string; diff --git a/apps/desktop/vite.config.ts b/apps/desktop/vite.config.ts index 11fed98..6933ff0 100644 --- a/apps/desktop/vite.config.ts +++ b/apps/desktop/vite.config.ts @@ -2,11 +2,13 @@ import { defineConfig } from "vite"; import path from "node:path"; import electron from "vite-plugin-electron/simple"; import react from "@vitejs/plugin-react"; +import { nodePolyfills } from "vite-plugin-node-polyfills"; // https://vitejs.dev/config/ export default defineConfig({ plugins: [ react(), + nodePolyfills(), electron({ main: { // Shortcut of `build.lib.entry`. diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index b8ae8e5..710000c 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -13,6 +13,18 @@ importers: '@ant-design/icons': specifier: ^5.4.0 version: 5.4.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + '@cornerstonejs/core': + specifier: 1.84.4 + version: 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.41))(webpack@5.94.0)(wslink@2.1.3) + '@cornerstonejs/dicom-image-loader': + specifier: 1.84.4 + version: 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.41))(webpack@5.94.0)(wslink@2.1.3) + '@cornerstonejs/streaming-image-volume-loader': + specifier: 1.84.4 + version: 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.41))(webpack@5.94.0)(wslink@2.1.3) + '@cornerstonejs/tools': + specifier: 1.84.4 + version: 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(@icr/polyseg-wasm@0.4.0)(@kitware/vtk.js@30.4.1(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.41))(webpack@5.94.0)(wslink@2.1.3))(@types/d3-array@3.2.1)(@types/d3-interpolate@3.0.4)(autoprefixer@10.4.20(postcss@8.4.41))(d3-array@3.2.4)(d3-interpolate@3.0.1)(gl-matrix@3.4.3)(webpack@5.94.0)(wslink@2.1.3) '@google-cloud/spanner': specifier: ^7.12.0 version: 7.14.0 @@ -91,12 +103,18 @@ importers: dayjs: specifier: 1.11.13 version: 1.11.13 + dcmjs: + specifier: 0.34.1 + version: 0.34.1 dexie: specifier: ^4.0.8 version: 4.0.8 dicom-parser: specifier: 1.8.21 version: 1.8.21 + dicomweb-client: + specifier: 0.10.4 + version: 0.10.4 dockview: specifier: ^1.15.2 version: 1.16.1 @@ -236,6 +254,9 @@ importers: vite-plugin-electron-renderer: specifier: ^0.14.5 version: 0.14.5 + vite-plugin-node-polyfills: + specifier: 0.22.0 + version: 0.22.0(rollup@4.21.1)(vite@5.4.2(@types/node@22.5.2)(terser@5.32.0)) packages: 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optional: true - has-proto@1.0.3: - optional: true + has-proto@1.0.3: {} - has-symbols@1.0.3: - optional: true + has-symbols@1.0.3: {} + + has-tostringtag@1.0.2: + dependencies: + has-symbols: 1.0.3 + + hash-base@3.0.4: + dependencies: + inherits: 2.0.4 + safe-buffer: 5.2.1 + + hash-base@3.1.0: + dependencies: + inherits: 2.0.4 + readable-stream: 3.6.2 + safe-buffer: 5.2.1 + + hash.js@1.1.7: + dependencies: + inherits: 2.0.4 + minimalistic-assert: 1.0.1 hasown@2.0.2: dependencies: function-bind: 1.1.2 + hmac-drbg@1.0.1: + dependencies: + hash.js: 1.1.7 + minimalistic-assert: 1.0.1 + minimalistic-crypto-utils: 1.0.1 + hosted-git-info@4.1.0: dependencies: lru-cache: 6.0.0 @@ -6937,6 +9378,8 @@ snapshots: quick-lru: 5.1.1 resolve-alpn: 1.2.1 + https-browserify@1.0.0: {} + https-proxy-agent@5.0.1: dependencies: agent-base: 6.0.2 @@ -6988,16 +9431,31 @@ snapshots: bowser: 1.9.4 hyphenate-style-name: 1.1.0 + internmap@2.0.3: {} + + interpret@1.4.0: {} + invariant@2.2.4: dependencies: loose-envify: 1.4.0 + iota-array@1.0.0: {} + + is-arguments@1.1.1: + dependencies: + call-bind: 1.0.7 + has-tostringtag: 1.0.2 + is-arrayish@0.3.2: {} is-binary-path@2.1.0: dependencies: binary-extensions: 2.3.0 + is-buffer@1.1.6: {} + + is-callable@1.2.7: {} + is-ci@3.0.1: dependencies: ci-info: 3.9.0 @@ -7012,12 +9470,21 @@ snapshots: is-fullwidth-code-point@3.0.0: {} + is-generator-function@1.0.10: + dependencies: + has-tostringtag: 1.0.2 + is-glob@4.0.3: dependencies: is-extglob: 2.1.1 is-gzip@1.0.0: {} + is-nan@1.3.2: + dependencies: + call-bind: 1.0.7 + define-properties: 1.2.1 + is-number@7.0.0: {} is-path-inside@3.0.3: {} @@ -7026,6 +9493,10 @@ snapshots: is-stream@2.0.1: {} + is-typed-array@1.1.13: + dependencies: + which-typed-array: 1.1.15 + is@3.3.0: {} isarray@1.0.0: {} @@ -7036,6 +9507,8 @@ snapshots: isexe@2.0.0: {} + isomorphic-timers-promises@1.0.1: {} + jackspeak@3.4.3: dependencies: '@isaacs/cliui': 8.0.2 @@ -7049,14 +9522,27 @@ snapshots: filelist: 1.0.4 minimatch: 3.1.2 + jest-worker@27.5.1: + dependencies: + '@types/node': 22.5.2 + merge-stream: 2.0.0 + supports-color: 8.1.1 + jiti@1.21.6: {} js-tokens@4.0.0: {} + js-yaml@3.14.0: + dependencies: + argparse: 1.0.10 + esprima: 4.0.1 + js-yaml@4.1.0: dependencies: argparse: 2.0.1 + jsesc@0.5.0: {} + jsesc@2.5.2: {} json-bigint@1.0.0: @@ -7065,6 +9551,8 @@ snapshots: json-buffer@3.0.1: {} + json-parse-even-better-errors@2.3.1: {} + json-schema-traverse@0.4.1: {} json-schema-traverse@1.0.0: {} @@ -7080,6 +9568,10 @@ snapshots: dependencies: string-convert: 0.2.1 + json5@1.0.2: + dependencies: + minimist: 1.2.8 + json5@2.2.3: {} jsonfile@4.0.0: @@ -7124,18 +9616,38 @@ snapshots: lines-and-columns@1.2.4: {} + loader-runner@4.3.0: {} + + loader-utils@1.4.2: + dependencies: + big.js: 5.2.2 + emojis-list: 3.0.0 + json5: 1.0.2 + + loader-utils@2.0.4: + dependencies: + big.js: 5.2.2 + emojis-list: 3.0.0 + json5: 2.2.3 + locate-path@6.0.0: dependencies: p-locate: 5.0.0 lodash.camelcase@4.3.0: {} + lodash.clonedeep@4.5.0: {} + + lodash.debounce@4.0.8: {} + lodash.defaults@4.2.0: {} lodash.difference@4.5.0: {} lodash.flatten@4.4.0: {} + lodash.get@4.4.2: {} + lodash.isplainobject@4.0.6: {} lodash.merge@4.6.2: {} @@ -7146,6 +9658,8 @@ snapshots: lodash@4.17.21: {} + loglevelnext@3.0.1: {} + long@4.0.0: {} long@5.2.3: {} @@ -7174,11 +9688,21 @@ snapshots: dependencies: react: 18.3.1 + magic-string@0.30.11: + dependencies: + '@jridgewell/sourcemap-codec': 1.5.0 + matcher@3.0.0: dependencies: escape-string-regexp: 4.0.0 optional: true + md5.js@1.3.5: + dependencies: + hash-base: 3.1.0 + inherits: 2.0.4 + safe-buffer: 5.2.1 + merge-stream@2.0.0: {} merge2@1.4.1: {} @@ -7188,6 +9712,11 @@ snapshots: braces: 3.0.3 picomatch: 2.3.1 + miller-rabin@4.0.1: + dependencies: + bn.js: 4.12.0 + brorand: 1.1.0 + mime-db@1.52.0: {} mime-types@2.1.35: @@ -7202,6 +9731,10 @@ snapshots: mimic-response@3.1.0: {} + minimalistic-assert@1.0.1: {} + + minimalistic-crypto-utils@1.0.1: {} + minimatch@3.1.2: dependencies: brace-expansion: 1.1.11 @@ -7254,6 +9787,13 @@ snapshots: natural-compare@1.4.0: {} + ndarray@1.0.19: + dependencies: + iota-array: 1.0.0 + is-buffer: 1.1.6 + + neo-async@2.6.2: {} + node-abi@3.67.0: dependencies: semver: 7.6.3 @@ -7271,6 +9811,36 @@ snapshots: node-releases@2.0.18: {} + node-stdlib-browser@1.2.0: + dependencies: + assert: 2.1.0 + browser-resolve: 2.0.0 + browserify-zlib: 0.2.0 + buffer: 5.7.1 + console-browserify: 1.2.0 + constants-browserify: 1.0.0 + create-require: 1.1.1 + crypto-browserify: 3.12.0 + domain-browser: 4.23.0 + events: 3.3.0 + https-browserify: 1.0.0 + isomorphic-timers-promises: 1.0.1 + os-browserify: 0.3.0 + path-browserify: 1.0.1 + pkg-dir: 5.0.0 + process: 0.11.10 + punycode: 1.4.1 + querystring-es3: 0.2.1 + readable-stream: 3.6.2 + stream-browserify: 3.0.0 + stream-http: 3.2.0 + string_decoder: 1.3.0 + timers-browserify: 2.0.12 + tty-browserify: 0.0.1 + url: 0.11.4 + util: 0.12.5 + vm-browserify: 1.1.2 + normalize-path@3.0.0: {} normalize-range@0.1.2: {} @@ -7281,8 +9851,21 @@ snapshots: object-hash@3.0.0: {} - object-keys@1.1.1: - optional: true + object-inspect@1.13.2: {} + + object-is@1.1.6: + dependencies: + call-bind: 1.0.7 + define-properties: 1.2.1 + + object-keys@1.1.1: {} + + object.assign@4.1.5: + dependencies: + call-bind: 1.0.7 + define-properties: 1.2.1 + has-symbols: 1.0.3 + object-keys: 1.1.1 once@1.4.0: dependencies: @@ -7332,6 +9915,8 @@ snapshots: type-check: 0.4.0 word-wrap: 1.2.5 + os-browserify@0.3.0: {} + p-cancelable@2.1.1: {} p-finally@1.0.0: {} @@ -7357,10 +9942,25 @@ snapshots: pako@0.2.9: {} + pako@1.0.11: {} + + pako@2.1.0: {} + parent-module@1.0.1: dependencies: callsites: 3.1.0 + parse-asn1@5.1.7: + dependencies: + asn1.js: 4.10.1 + browserify-aes: 1.2.0 + evp_bytestokey: 1.0.3 + hash-base: 3.0.4 + pbkdf2: 3.1.2 + safe-buffer: 5.2.1 + + path-browserify@1.0.1: {} + path-exists@4.0.0: {} path-is-absolute@1.0.1: {} @@ -7376,6 +9976,14 @@ snapshots: path-type@4.0.0: {} + pbkdf2@3.1.2: + dependencies: + create-hash: 1.2.0 + create-hmac: 1.1.7 + ripemd160: 2.0.2 + safe-buffer: 5.2.1 + sha.js: 2.4.11 + peek-stream@1.1.3: dependencies: buffer-from: 1.1.2 @@ -7392,6 +10000,10 @@ snapshots: pirates@4.0.6: {} + pkg-dir@5.0.0: + dependencies: + find-up: 5.0.0 + platform@1.3.6: {} plist@3.1.0: @@ -7400,6 +10012,8 @@ snapshots: base64-js: 1.5.1 xmlbuilder: 15.1.1 + possible-typed-array-names@1.0.0: {} + postcss-import@15.1.0(postcss@8.4.41): dependencies: postcss: 8.4.41 @@ -7456,6 +10070,8 @@ snapshots: process-nextick-args@2.0.1: {} + process@0.11.10: {} + progress@2.0.3: {} promise-retry@2.0.1: @@ -7506,6 +10122,15 @@ snapshots: proxy-from-env@1.1.0: {} + public-encrypt@4.0.3: + dependencies: + bn.js: 4.12.0 + browserify-rsa: 4.1.0 + create-hash: 1.2.0 + parse-asn1: 5.1.7 + randombytes: 2.1.0 + safe-buffer: 5.2.1 + pump@2.0.1: dependencies: end-of-stream: 1.4.4 @@ -7522,8 +10147,16 @@ snapshots: inherits: 2.0.4 pump: 2.0.1 + punycode@1.4.1: {} + punycode@2.3.1: {} + qs@6.13.0: + dependencies: + side-channel: 1.0.6 + + querystring-es3@0.2.1: {} + queue-microtask@1.2.3: {} queue-tick@1.0.1: {} @@ -7538,6 +10171,15 @@ snapshots: prop-types: 15.8.1 react: 18.3.1 + randombytes@2.1.0: + dependencies: + safe-buffer: 5.2.1 + + randomfill@1.0.4: + dependencies: + randombytes: 2.1.0 + safe-buffer: 5.2.1 + rc-cascader@3.27.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1): dependencies: '@babel/runtime': 7.25.4 @@ -8001,8 +10643,35 @@ snapshots: dependencies: picomatch: 2.3.1 + rechoir@0.6.2: + dependencies: + resolve: 1.22.8 + + regenerate-unicode-properties@10.1.1: + dependencies: + regenerate: 1.4.2 + + regenerate@1.4.2: {} + regenerator-runtime@0.14.1: {} + regenerator-transform@0.15.2: + dependencies: + '@babel/runtime': 7.25.4 + + regexpu-core@5.3.2: + dependencies: + '@babel/regjsgen': 0.8.0 + regenerate: 1.4.2 + regenerate-unicode-properties: 10.1.1 + regjsparser: 0.9.1 + unicode-match-property-ecmascript: 2.0.0 + unicode-match-property-value-ecmascript: 2.1.0 + + regjsparser@0.9.1: + dependencies: + jsesc: 0.5.0 + require-directory@2.1.1: {} require-from-string@2.0.2: {} @@ -8044,6 +10713,11 @@ snapshots: dependencies: glob: 10.4.5 + ripemd160@2.0.2: + dependencies: + hash-base: 3.1.0 + inherits: 2.0.4 + roarr@2.15.4: dependencies: boolean: 3.2.0 @@ -8096,10 +10770,18 @@ snapshots: dependencies: loose-envify: 1.4.0 + schema-utils@3.3.0: + dependencies: + '@types/json-schema': 7.0.15 + ajv: 6.12.6 + ajv-keywords: 3.5.2(ajv@6.12.6) + scroll-into-view-if-needed@3.1.0: dependencies: compute-scroll-into-view: 3.1.0 + seedrandom@3.0.5: {} + semver-compare@1.0.0: optional: true @@ -8112,6 +10794,30 @@ snapshots: type-fest: 0.13.1 optional: true + serialize-javascript@6.0.2: + dependencies: + randombytes: 2.1.0 + + set-function-length@1.2.2: + dependencies: + define-data-property: 1.1.4 + es-errors: 1.3.0 + function-bind: 1.1.2 + get-intrinsic: 1.2.4 + gopd: 1.0.1 + has-property-descriptors: 1.0.2 + + setimmediate@1.0.5: {} + + sha.js@2.4.11: + dependencies: + inherits: 2.0.4 + safe-buffer: 5.2.1 + + shader-loader@1.3.1: + dependencies: + loader-utils: 1.4.2 + sharp@0.32.6: dependencies: color: 4.2.3 @@ -8129,6 +10835,19 @@ snapshots: shebang-regex@3.0.0: {} + shelljs@0.8.5: + dependencies: + glob: 7.2.3 + interpret: 1.4.0 + rechoir: 0.6.2 + + side-channel@1.0.6: + dependencies: + call-bind: 1.0.7 + es-errors: 1.3.0 + get-intrinsic: 1.2.4 + object-inspect: 1.13.2 + signal-exit@4.1.0: {} simple-concat@1.0.1: {} @@ -8168,6 +10887,8 @@ snapshots: source-map@0.6.1: {} + spark-md5@3.0.2: {} + split-array-stream@1.0.3: dependencies: async: 2.6.4 @@ -8177,6 +10898,8 @@ snapshots: dependencies: is-stream-ended: 0.1.4 + sprintf-js@1.0.3: {} + sprintf-js@1.1.3: optional: true @@ -8186,10 +10909,22 @@ snapshots: steno@4.0.2: {} + stream-browserify@3.0.0: + dependencies: + inherits: 2.0.4 + readable-stream: 3.6.2 + stream-events@1.0.5: dependencies: stubs: 3.0.0 + stream-http@3.2.0: + dependencies: + builtin-status-codes: 3.0.0 + inherits: 2.0.4 + readable-stream: 3.6.2 + xtend: 4.0.2 + stream-shift@1.0.3: {} streamx@2.19.0: @@ -8264,6 +10999,10 @@ snapshots: dependencies: has-flag: 4.0.0 + supports-color@8.1.1: + dependencies: + has-flag: 4.0.0 + supports-preserve-symlinks-flag@1.0.0: {} tailwind-merge@2.5.2: {} @@ -8299,6 +11038,8 @@ snapshots: transitivePeerDependencies: - ts-node + tapable@2.2.1: {} + tar-fs@2.1.1: dependencies: chownr: 1.1.4 @@ -8362,13 +11103,21 @@ snapshots: async-exit-hook: 2.0.1 fs-extra: 10.1.0 + terser-webpack-plugin@5.3.10(webpack@5.94.0): + dependencies: + '@jridgewell/trace-mapping': 0.3.25 + jest-worker: 27.5.1 + schema-utils: 3.3.0 + serialize-javascript: 6.0.2 + terser: 5.32.0 + webpack: 5.94.0 + terser@5.32.0: dependencies: '@jridgewell/source-map': 0.3.6 acorn: 8.12.1 commander: 2.20.3 source-map-support: 0.5.21 - optional: true text-decoder@1.1.1: dependencies: @@ -8395,6 +11144,10 @@ snapshots: dependencies: readable-stream: 3.6.2 + timers-browserify@2.0.12: + dependencies: + setimmediate: 1.0.5 + tmp-promise@3.0.3: dependencies: tmp: 0.2.3 @@ -8423,6 +11176,8 @@ snapshots: tslib@2.7.0: {} + tty-browserify@0.0.1: {} + tunnel-agent@0.6.0: dependencies: safe-buffer: 5.2.1 @@ -8444,6 +11199,17 @@ snapshots: undici-types@6.19.8: {} + unicode-canonical-property-names-ecmascript@2.0.0: {} + + unicode-match-property-ecmascript@2.0.0: + dependencies: + unicode-canonical-property-names-ecmascript: 2.0.0 + unicode-property-aliases-ecmascript: 2.1.0 + + unicode-match-property-value-ecmascript@2.1.0: {} + + unicode-property-aliases-ecmascript@2.1.0: {} + universalify@0.1.2: {} universalify@2.0.1: {} @@ -8458,6 +11224,11 @@ snapshots: dependencies: punycode: 2.3.1 + url@0.11.4: + dependencies: + punycode: 1.4.1 + qs: 6.13.0 + use-callback-ref@1.3.2(@types/react@18.3.4)(react@18.3.1): dependencies: react: 18.3.1 @@ -8477,6 +11248,14 @@ snapshots: util-deprecate@1.0.2: {} + util@0.12.5: + dependencies: + inherits: 2.0.4 + is-arguments: 1.1.1 + is-generator-function: 1.0.10 + is-typed-array: 1.1.13 + which-typed-array: 1.1.15 + uuid@9.0.1: {} verror@1.10.1: @@ -8492,6 +11271,14 @@ snapshots: optionalDependencies: vite-plugin-electron-renderer: 0.14.5 + vite-plugin-node-polyfills@0.22.0(rollup@4.21.1)(vite@5.4.2(@types/node@22.5.2)(terser@5.32.0)): + dependencies: + '@rollup/plugin-inject': 5.0.5(rollup@4.21.1) + node-stdlib-browser: 1.2.0 + vite: 5.4.2(@types/node@22.5.2)(terser@5.32.0) + transitivePeerDependencies: + - rollup + vite@5.4.2(@types/node@22.5.2)(terser@5.32.0): dependencies: esbuild: 0.21.5 @@ -8502,8 +11289,51 @@ snapshots: fsevents: 2.3.3 terser: 5.32.0 + vm-browserify@1.1.2: {} + + watchpack@2.4.2: + dependencies: + glob-to-regexp: 0.4.1 + graceful-fs: 4.2.11 + + webgl-constants@1.1.1: {} + webidl-conversions@3.0.1: {} + webpack-sources@3.2.3: {} + + webpack@5.94.0: + dependencies: + '@types/estree': 1.0.5 + '@webassemblyjs/ast': 1.12.1 + '@webassemblyjs/wasm-edit': 1.12.1 + '@webassemblyjs/wasm-parser': 1.12.1 + acorn: 8.12.1 + acorn-import-attributes: 1.9.5(acorn@8.12.1) + browserslist: 4.23.3 + chrome-trace-event: 1.0.4 + enhanced-resolve: 5.17.1 + es-module-lexer: 1.5.4 + eslint-scope: 5.1.1 + events: 3.3.0 + glob-to-regexp: 0.4.1 + graceful-fs: 4.2.11 + json-parse-even-better-errors: 2.3.1 + loader-runner: 4.3.0 + mime-types: 2.1.35 + neo-async: 2.6.2 + schema-utils: 3.3.0 + tapable: 2.2.1 + terser-webpack-plugin: 5.3.10(webpack@5.94.0) + watchpack: 2.4.2 + webpack-sources: 3.2.3 + transitivePeerDependencies: + - '@swc/core' + - esbuild + - uglify-js + + webworker-promise@0.5.0: {} + whatwg-url@5.0.0: dependencies: tr46: 0.0.3 @@ -8511,12 +11341,26 @@ snapshots: when-exit@2.1.3: {} + which-typed-array@1.1.15: + dependencies: + available-typed-arrays: 1.0.7 + call-bind: 1.0.7 + for-each: 0.3.3 + gopd: 1.0.1 + has-tostringtag: 1.0.2 + which@2.0.2: dependencies: isexe: 2.0.0 word-wrap@1.2.5: {} + worker-loader@3.0.8(webpack@5.94.0): + dependencies: + loader-utils: 2.0.4 + schema-utils: 3.3.0 + webpack: 5.94.0 + wrap-ansi@7.0.0: dependencies: ansi-styles: 4.3.0 @@ -8531,6 +11375,18 @@ snapshots: wrappy@1.0.2: {} + wslink@2.1.3: + dependencies: + '@msgpack/msgpack': 2.8.0 + + xmlbuilder2@3.0.2: + dependencies: + '@oozcitak/dom': 1.15.10 + '@oozcitak/infra': 1.0.8 + '@oozcitak/util': 8.3.8 + '@types/node': 22.5.2 + js-yaml: 3.14.0 + xmlbuilder@15.1.1: {} xtend@4.0.2: {}