feat: 算法输出文件measurement.json接口调试
This commit is contained in:
mozzie
parent
db8ba53589
commit
595e144a13
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@ -58,4 +58,10 @@ pnpm config set virtual-store-dir-max-length 70
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- CORONAL（冠状位）：
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• 方向：冠状面，与矢状面垂直，沿身体的左右方向。
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• 描述：将身体分为前（腹侧）和后（背侧）部分。
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• 应用：适用于查看从前面到后面的结构，如面部和脑部的解剖。
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• 应用：适用于查看从前面到后面的结构，如面部和脑部的解剖。
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## 区分片子的类型
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头部扫描：通常总长度在100毫米以下。
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主动脉根部平扫：总长度通常在100毫米到200毫米之间。
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腹部扫描：总长度通常超过200毫米。
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@ -179,3 +179,57 @@ export const downloadSeriesDicomFiles = async (
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throw error;
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}
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};
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export /**
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* 根据SeriesInstanceUID获取总的扫描长度
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* @param seriesInstanceUID 序列实例UID
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* @returns 返回总的扫描长度（单位：毫米）
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*/
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const getTotalScanLength = async (
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seriesInstanceUID: string
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): Promise<number | null> => {
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try {
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// 1. 查找序列ID
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const findResponse = await axios.post(`${OrthancServerRoot}/tools/find`, {
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Level: "Series",
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Query: {
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SeriesInstanceUID: seriesInstanceUID,
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},
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});
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const seriesIds = findResponse.data;
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if (seriesIds.length === 0) {
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console.error("Series not found");
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return null;
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}
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const seriesId = seriesIds[0];
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// 2. 获取共享标签，提取SliceThickness
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const tagsResponse = await axios.get(
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`${OrthancServerRoot}/series/${seriesId}/shared-tags`
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);
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const tags = tagsResponse.data;
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const sliceThickness = parseFloat(tags["0018,0050"]["Value"]); // (0018,0050) SliceThickness
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if (isNaN(sliceThickness)) {
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console.error("SliceThickness not found");
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return null;
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}
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// 3. 获取实例列表，计算层数
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const instancesResponse = await axios.get(
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`${OrthancServerRoot}/series/${seriesId}/instances`
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);
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const instances = instancesResponse.data;
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const numberOfSlices = instances.length;
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console.log("numberOfSlices", numberOfSlices);
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console.log("sliceThickness", sliceThickness);
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// 4. 计算总的扫描长度
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const totalLength = Number(sliceThickness) * numberOfSlices;
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return totalLength;
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} catch (error) {
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console.error("Error:", error);
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return null;
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}
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};
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@ -1,10 +1,12 @@
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import { downloadSeriesDicomFiles } from "../../core/pacs";
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import { downloadSeriesDicomFiles, getTotalScanLength } from "../../core/pacs";
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import { executeInferTask } from "../../core/alg";
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import { InferDeviceEnum, InferStructuralEnum } from "../../core/alg.type";
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import { db } from "../../core/db";
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import log from "electron-log";
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import path from "node:path";
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import { app, ipcMain } from "electron";
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import { findSTLFiles } from "./util";
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import { readFileSync } from "node:fs";
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export const registerAlgHandler = () => {
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ipcMain.handle("device:infer:set", async (_event, inferDevice) => {
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@ -21,11 +23,16 @@ export const registerAlgHandler = () => {
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ipcMain.on("model:infer", async (event, SeriesInstanceUIDs) => {
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// 构造推理任务参数列表
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const pu = InferDeviceEnum.GPU;
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const module = InferStructuralEnum.AORTA;
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const turbo = true;
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const seg_schedule = true;
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for (let i = 0; i < SeriesInstanceUIDs.length; i++) {
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const SeriesInstanceUID = SeriesInstanceUIDs[i];
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const physicalLength = await getTotalScanLength(SeriesInstanceUID);
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const module =
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physicalLength && physicalLength < 200
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? InferStructuralEnum.AORTA
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: InferStructuralEnum.PERI;
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// 下载dicom到本地，获取文件夹路径
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const img_path = await downloadSeriesDicomFiles(SeriesInstanceUID);
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const save_path = path.join(
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@ -42,12 +49,38 @@ export const registerAlgHandler = () => {
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}
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});
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ipcMain.handle("alg:assets", (_event, SeriesInstanceUID) => {
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const assetsPath = path.join(
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ipcMain.handle("alg:assets", async (_event, SeriesInstanceUID) => {
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const physicalLength = await getTotalScanLength(SeriesInstanceUID);
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const module =
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physicalLength && physicalLength < 200
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? InferStructuralEnum.AORTA
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: InferStructuralEnum.PERI;
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const rootPath = path.join(
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app.getPath("userData"),
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"output",
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SeriesInstanceUID
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);
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console.log("assetsPath", assetsPath);
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const stlsPath = path.join(rootPath, module, "visualization");
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const stls = await findSTLFiles(stlsPath);
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if (stls.length > 0) {
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try {
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// 读取测量json
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const measurementPath = path.join(rootPath, module, "measurement.json");
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const measurementData = readFileSync(measurementPath, "utf-8");
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// 读取 STL 文件并转换为 ArrayBuffer
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const stlFiles = stls.map((file) => {
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const filePath = path.join(stlsPath, file);
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const data = readFileSync(filePath);
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return {
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fileName: file,
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data: data.buffer,
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};
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});
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return { stlFiles, measurement: JSON.parse(measurementData) };
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} catch (error) {
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console.error("Error reading measurement.json:", error);
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throw new Error("Failed to read or parse measurement.json");
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}
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}
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});
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};
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30
apps/desktop/electron/ipcEvent/alg/util.ts
Normal file
30
apps/desktop/electron/ipcEvent/alg/util.ts
Normal file
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@ -0,0 +1,30 @@
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import fs from "fs";
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import path from "path";
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/**
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* 读取指定路径下的所有.stl文件
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* @param dirPath 要搜索的目录路径
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* @returns 返回包含所有.stl文件名的数组
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*/
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export const findSTLFiles = (dirPath: string): Promise<string[]> => {
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return new Promise((resolve) => {
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// 检查路径是否存在
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if (!fs.existsSync(dirPath)) {
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resolve([]); // 路径不存在时返回空数组
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return;
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}
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// 异步读取目录内容
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fs.readdir(dirPath, (err, files) => {
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if (err) {
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resolve([]); // 读取错误时返回空数组
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} else {
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// 过滤出.stl文件
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const stlFiles = files.filter(
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(file) => path.extname(file).toLowerCase() === ".stl"
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);
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resolve(stlFiles);
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}
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});
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});
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};
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@ -77,9 +77,11 @@
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"tailwindcss-animate": "^1.0.7",
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"zod": "3.23.8",
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"mitt": "3.0.1",
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"p-limit": "6.1.0"
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"p-limit": "6.1.0",
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"three": "0.164.1"
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},
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"devDependencies": {
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"@types/three": "0.164.0",
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"@radix-ui/react-icons": "^1.3.0",
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"@types/lodash": "4.17.7",
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"@types/node": "22.5.2",
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133
apps/desktop/src/pages/Viewer/ModelViewer/AortaViewer.tsx
Normal file
133
apps/desktop/src/pages/Viewer/ModelViewer/AortaViewer.tsx
Normal file
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@ -0,0 +1,133 @@
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import React, { useEffect, useRef } from "react";
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import * as THREE from "three";
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import { OrbitControls } from "three/examples/jsm/controls/OrbitControls";
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import { loadModels } from "./util";
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interface AlgAssets {
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stlFiles: { fileName: string; data: ArrayBuffer }[];
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measurement: Record<string, any>;
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}
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export const AortaViewer: React.FC<{ SeriesInstanceUID: string }> = ({
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SeriesInstanceUID,
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}) => {
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const canvasRef = useRef<HTMLCanvasElement | null>(null);
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const rendererRef = useRef<THREE.WebGLRenderer>();
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const sceneRef = useRef<THREE.Scene>(new THREE.Scene());
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const cameraRef = useRef<THREE.PerspectiveCamera>();
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const controlsRef = useRef<OrbitControls>();
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const groupRef = useRef(new THREE.Group());
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useEffect(() => {
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if (SeriesInstanceUID) {
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window.ipcRenderer
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.invoke("alg:assets", SeriesInstanceUID)
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.then((assets: AlgAssets) => {
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const { stlFiles, measurement } = assets;
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console.log(measurement);
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Promise.all(loadModels(stlFiles)).then((meshes) => {
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meshes.forEach((mesh) => {
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if (mesh) groupRef.current.add(mesh);
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});
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});
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})
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.catch((error) => {
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console.error("Error invoking alg:assets:", error);
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});
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}
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}, [SeriesInstanceUID]);
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useEffect(() => {
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if (!SeriesInstanceUID || !canvasRef.current) return;
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const { clientWidth, clientHeight } = canvasRef.current;
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if (!rendererRef.current) {
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// 初始化渲染器
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initRenderer(clientWidth, clientHeight);
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initCamera(clientWidth, clientHeight);
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initControls();
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initLights();
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initScene();
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// 开始渲染循环
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startRenderLoop();
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}
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const handleResize = () => {
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if (rendererRef.current && cameraRef.current) {
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const { clientWidth, clientHeight } = canvasRef.current!;
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rendererRef.current.setSize(clientWidth, clientHeight);
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cameraRef.current.aspect = clientWidth / clientHeight;
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cameraRef.current.updateProjectionMatrix();
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}
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};
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window.addEventListener("resize", handleResize);
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return () => {
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window.removeEventListener("resize", handleResize);
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};
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}, [SeriesInstanceUID]);
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// 初始化渲染器
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const initRenderer = (width: number, height: number) => {
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const renderer = new THREE.WebGLRenderer({
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antialias: true,
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canvas: canvasRef.current!,
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});
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renderer.setSize(width, height);
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renderer.setClearColor(0x000000);
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rendererRef.current = renderer;
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};
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// 初始化相机
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const initCamera = (width: number, height: number) => {
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const camera = new THREE.PerspectiveCamera(75, width / height, 0.1, 10000);
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camera.position.set(5, 5, 5);
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camera.lookAt(0, 0, 0);
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cameraRef.current = camera;
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};
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// 初始化控制器
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const initControls = () => {
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const controls = new OrbitControls(cameraRef.current!, canvasRef.current!);
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controls.target.set(0, 0, 0); // 初始目标点
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controls.update();
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controlsRef.current = controls;
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};
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// 初始化光源
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const initLights = () => {
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const ambientLight = new THREE.AmbientLight(0xffffff);
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const directionalLight = new THREE.DirectionalLight(0xffffff);
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directionalLight.position.set(1, 1, 1);
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sceneRef.current.add(ambientLight, directionalLight);
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};
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// 初始化场景
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const initScene = () => {
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const axesHelper = new THREE.AxesHelper(1000);
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sceneRef.current.add(axesHelper);
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sceneRef.current.add(groupRef.current);
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};
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// 开始渲染循环
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const startRenderLoop = () => {
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const animate = () => {
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requestAnimationFrame(animate);
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controlsRef.current?.update();
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rendererRef.current!.render(sceneRef.current!, cameraRef.current!);
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};
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animate();
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};
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return <canvas ref={canvasRef} style={{ width: "100%", height: "100%" }} />;
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};
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// if (canvasRef.current && cameraRef.current && rendererRef.current) {
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// const { clientWidth, clientHeight } = canvasRef.current;
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// cameraRef.current.aspect = clientWidth / clientHeight;
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// rendererRef.current.setPixelRatio(window.devicePixelRatio * 2);
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// cameraRef.current.updateProjectionMatrix();
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// }
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@ -1,5 +1,6 @@
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import { useEffect, useState } from "react";
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import { useLocation } from "react-router-dom";
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import { AortaViewer } from "./AortaViewer";
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interface Model3DViewerProps {}
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@ -9,13 +10,11 @@ export const Model3DViewer = (props: Model3DViewerProps) => {
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const queryParams = new URLSearchParams(location.search);
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const SeriesInstanceUID = queryParams.get("SeriesInstanceUID");
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useEffect(() => {
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window.ipcRenderer.invoke("alg:assets", SeriesInstanceUID).then((res) => {
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console.log(res);
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});
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});
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return (
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<div>{SeriesInstanceUID ? <div>3d</div> : <div>启动AI分析该数据</div>}</div>
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<div className="w-full h-full">
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{SeriesInstanceUID && (
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<AortaViewer SeriesInstanceUID={SeriesInstanceUID} />
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)}
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</div>
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);
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};
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55
apps/desktop/src/pages/Viewer/ModelViewer/util.tsx
Normal file
55
apps/desktop/src/pages/Viewer/ModelViewer/util.tsx
Normal file
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@ -0,0 +1,55 @@
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import { STLLoader } from "three/examples/jsm/loaders/STLLoader";
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import * as THREE from "three";
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const createObjectURLFromData = (data: ArrayBuffer): string => {
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const blob = new Blob([data], { type: "application/octet-stream" });
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return URL.createObjectURL(blob);
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};
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const loadSTLFile = (
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stlLoader: STLLoader,
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url: string,
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fileName: string
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): Promise<THREE.Mesh> => {
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return new Promise((resolve, reject) => {
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stlLoader.load(
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url,
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(geometry: THREE.BufferGeometry) => {
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const material = new THREE.MeshLambertMaterial({
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// color: "red",
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transparent: true,
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side: THREE.DoubleSide,
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});
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const mesh = new THREE.Mesh(geometry, material);
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mesh.name = fileName;
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resolve(mesh);
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},
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undefined,
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(error: Error) => {
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console.error(`Error loading STL file ${fileName}:`, error);
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reject(error);
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}
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);
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});
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};
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export const loadModels = (
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stlFiles: { fileName: string; data: ArrayBuffer }[]
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) => {
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const loadingManager = new THREE.LoadingManager();
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const stlLoader = new STLLoader(loadingManager);
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const loadPromises = stlFiles.map((file) => {
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const { fileName, data } = file;
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const url = createObjectURLFromData(data);
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try {
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return loadSTLFile(stlLoader, url, fileName);
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} catch (error) {
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console.error(`Failed to load STL file: ${fileName}`, error);
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} finally {
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URL.revokeObjectURL(url); // Clean up URL after use
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}
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});
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return loadPromises;
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};
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@ -208,6 +208,9 @@ importers:
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tailwindcss-animate:
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specifier: ^1.0.7
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version: 1.0.7(tailwindcss@3.4.10)
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three:
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specifier: 0.164.1
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version: 0.164.1
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zod:
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specifier: 3.23.8
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version: 3.23.8
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@ -227,6 +230,9 @@ importers:
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'@types/react-dom':
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specifier: ^18.2.21
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version: 18.3.0
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'@types/three':
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specifier: 0.164.0
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version: 0.164.0
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'@typescript-eslint/eslint-plugin':
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specifier: ^7.1.1
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version: 7.18.0(@typescript-eslint/parser@7.18.0(eslint@8.57.0)(typescript@5.5.4))(eslint@8.57.0)(typescript@5.5.4)
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@ -2125,6 +2131,9 @@ packages:
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resolution: {integrity: sha512-XCuKFP5PS55gnMVu3dty8KPatLqUoy/ZYzDzAGCQ8JNFCkLXzmI7vNHCR+XpbZaMWQK/vQubr7PkYq8g470J/A==}
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engines: {node: '>= 10'}
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'@tweenjs/tween.js@23.1.3':
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resolution: {integrity: sha512-vJmvvwFxYuGnF2axRtPYocag6Clbb5YS7kLL+SO/TeVFzHqDIWrNKYtcsPMibjDx9O+bu+psAy9NKfWklassUA==}
|
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'@types/babel__core@7.20.5':
|
||||
resolution: {integrity: sha512-qoQprZvz5wQFJwMDqeseRXWv3rqMvhgpbXFfVyWhbx9X47POIA6i/+dXefEmZKoAgOaTdaIgNSMqMIU61yRyzA==}
|
||||
|
||||
|
|
@ -2222,6 +2231,12 @@ packages:
|
|||
'@types/stack-trace@0.0.33':
|
||||
resolution: {integrity: sha512-O7in6531Bbvlb2KEsJ0dq0CHZvc3iWSR5ZYMtvGgnHA56VgriAN/AU2LorfmcvAl2xc9N5fbCTRyMRRl8nd74g==}
|
||||
|
||||
'@types/stats.js@0.17.3':
|
||||
resolution: {integrity: sha512-pXNfAD3KHOdif9EQXZ9deK82HVNaXP5ZIF5RP2QG6OQFNTaY2YIetfrE9t528vEreGQvEPRDDc8muaoYeK0SxQ==}
|
||||
|
||||
'@types/three@0.164.0':
|
||||
resolution: {integrity: sha512-SFDofn9dJVrE+1DKta7xj7lc4ru7B3S3yf10NsxOserW57aQlB6GxtAS1UK5To3LfEMN5HUHMu3n5v+M5rApgA==}
|
||||
|
||||
'@types/tough-cookie@4.0.5':
|
||||
resolution: {integrity: sha512-/Ad8+nIOV7Rl++6f1BdKxFSMgmoqEoYbHRpPcx3JEfv8VRsQe9Z4mCXeJBzxs7mbHY/XOZZuXlRNfhpVPbs6ZA==}
|
||||
|
||||
|
|
@ -3315,6 +3330,9 @@ packages:
|
|||
fflate@0.7.3:
|
||||
resolution: {integrity: sha512-0Zz1jOzJWERhyhsimS54VTqOteCNwRtIlh8isdL0AXLo0g7xNTfTL7oWrkmCnPhZGocKIkWHBistBrrpoNH3aw==}
|
||||
|
||||
fflate@0.8.2:
|
||||
resolution: {integrity: sha512-cPJU47OaAoCbg0pBvzsgpTPhmhqI5eJjh/JIu8tPj5q+T7iLvW/JAYUqmE7KOB4R1ZyEhzBaIQpQpardBF5z8A==}
|
||||
|
||||
file-entry-cache@6.0.1:
|
||||
resolution: {integrity: sha512-7Gps/XWymbLk2QLYK4NzpMOrYjMhdIxXuIvy2QBsLE6ljuodKvdkWs/cpyJJ3CVIVpH0Oi1Hvg1ovbMzLdFBBg==}
|
||||
engines: {node: ^10.12.0 || >=12.0.0}
|
||||
|
|
@ -3967,6 +3985,9 @@ packages:
|
|||
resolution: {integrity: sha512-8q7VEgMJW4J8tcfVPy8g09NcQwZdbwFEqhe/WZkoIzjn/3TGDwtOCYtXGxA3O8tPzpczCCDgv+P2P5y00ZJOOg==}
|
||||
engines: {node: '>= 8'}
|
||||
|
||||
meshoptimizer@0.18.1:
|
||||
resolution: {integrity: sha512-ZhoIoL7TNV4s5B6+rx5mC//fw8/POGyNxS/DZyCJeiZ12ScLfVwRE/GfsxwiTkMYYD5DmK2/JXnEVXqL4rF+Sw==}
|
||||
|
||||
micromatch@4.0.8:
|
||||
resolution: {integrity: sha512-PXwfBhYu0hBCPw8Dn0E+WDYb7af3dSLVWKi3HGv84IdF4TyFoC0ysxFd0Goxw7nSv4T/PzEJQxsYsEiFCKo2BA==}
|
||||
engines: {node: '>=8.6'}
|
||||
|
|
@ -5197,6 +5218,9 @@ packages:
|
|||
thenify@3.3.1:
|
||||
resolution: {integrity: sha512-RVZSIV5IG10Hk3enotrhvz0T9em6cyHBLkH/YAZuKqd8hRkKhSfCGIcP2KUY0EPxndzANBmNllzWPwak+bheSw==}
|
||||
|
||||
three@0.164.1:
|
||||
resolution: {integrity: sha512-iC/hUBbl1vzFny7f5GtqzVXYjMJKaTPxiCxXfrvVdBi1Sf+jhd1CAkitiFwC7mIBFCo3MrDLJG97yisoaWig0w==}
|
||||
|
||||
throttle-debounce@5.0.2:
|
||||
resolution: {integrity: sha512-B71/4oyj61iNH0KeCamLuE2rmKuTO5byTOSVwECM5FA7TiAiAW+UqTKZ9ERueC4qvgSttUhdmq1mXC3kJqGX7A==}
|
||||
engines: {node: '>=12.22'}
|
||||
|
|
@ -7594,6 +7618,8 @@ snapshots:
|
|||
|
||||
'@tootallnate/once@2.0.0': {}
|
||||
|
||||
'@tweenjs/tween.js@23.1.3': {}
|
||||
|
||||
'@types/babel__core@7.20.5':
|
||||
dependencies:
|
||||
'@babel/parser': 7.25.4
|
||||
|
|
@ -7713,6 +7739,16 @@ snapshots:
|
|||
|
||||
'@types/stack-trace@0.0.33': {}
|
||||
|
||||
'@types/stats.js@0.17.3': {}
|
||||
|
||||
'@types/three@0.164.0':
|
||||
dependencies:
|
||||
'@tweenjs/tween.js': 23.1.3
|
||||
'@types/stats.js': 0.17.3
|
||||
'@types/webxr': 0.5.20
|
||||
fflate: 0.8.2
|
||||
meshoptimizer: 0.18.1
|
||||
|
||||
'@types/tough-cookie@4.0.5': {}
|
||||
|
||||
'@types/verror@1.10.10':
|
||||
|
|
@ -9131,6 +9167,8 @@ snapshots:
|
|||
|
||||
fflate@0.7.3: {}
|
||||
|
||||
fflate@0.8.2: {}
|
||||
|
||||
file-entry-cache@6.0.1:
|
||||
dependencies:
|
||||
flat-cache: 3.2.0
|
||||
|
|
@ -9802,6 +9840,8 @@ snapshots:
|
|||
|
||||
merge2@1.4.1: {}
|
||||
|
||||
meshoptimizer@0.18.1: {}
|
||||
|
||||
micromatch@4.0.8:
|
||||
dependencies:
|
||||
braces: 3.0.3
|
||||
|
|
@ -11260,6 +11300,8 @@ snapshots:
|
|||
dependencies:
|
||||
any-promise: 1.3.0
|
||||
|
||||
three@0.164.1: {}
|
||||
|
||||
throttle-debounce@5.0.2: {}
|
||||
|
||||
through2@2.0.5:
|
||||
|
|
|
|||
Loading…
Reference in New Issue
Block a user